Ontology mapping
- Primary identifier
-
CHEBI:18405 - Ontology label
- pyridoxal 5'-phosphate
- kg-microbe node
CHEBI:18405
Nutritional roles
- Role
- VITAMIN_SOURCE
- Confidence
- 1.0
- Evidence
- Reference type
- DATABASE_ENTRY
- Reference text
- Imported from CultureMech pipeline
- Curator note
- Original role text: Vitamin Source
Synonyms (12)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Role: Vitamin; Properties: Organic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| (4-formyl-5-hydroxy-6-methylpyridin-3-yl)methyl dihydrogen phosphate | EXACT_SYNONYM | kg_microbe | |
| 3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]-4-pyridinecarboxaldehyde | EXACT_SYNONYM | kg_microbe | |
| 3-hydroxy-5-(hydroxymethyl)-2-methylisonicotinaldehyde 5-phosphate | EXACT_SYNONYM | kg_microbe | |
| PLP | EXACT_SYNONYM | kg_microbe | |
| PYRIDOXAL-5'-PHOSPHATE | EXACT_SYNONYM | kg_microbe | |
| Phosphoric acid mono-(4-formyl-5-hydroxy-6-methyl-pyridin-3-ylmethyl) ester | EXACT_SYNONYM | kg_microbe | |
| Pyridoxal 5-phosphate | EXACT_SYNONYM | kg_microbe | |
| codecarboxylase | EXACT_SYNONYM | kg_microbe | |
| pyridoxal 5'-(dihydrogen phosphate) | EXACT_SYNONYM | kg_microbe | |
| pyridoxal 5-monophosphoric acid ester | EXACT_SYNONYM | kg_microbe | |
| pyridoxal-phosphate (Sigma Aldrich) | CATALOG_VARIANT | culturemech:output/ingredient_occurrences.tsv |
Chemical properties
- Cas rn
- 54-47-7
- Data source
- PubChem API
- Retrieval date
- 2026-04-05T19:53:42.974867+00:00
- Molecular formula
- C8H10NO6P
- Inchi
- InChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-16(12,13)14/h2-3,11H,4H2,1H3,(H2,12,13,14)
- Smiles
- [H]C(=O)c1c(COP(=O)(O)O)cnc(C)c1O
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 10
- Distinct media
- 10
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:53:42.974921+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:54-47-7 from PubChem API via name lookup (Pyridoxal phosphate) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 10 synonyms from kg-microbe P4.4 enrichment: (4-formyl-5-hydroxy-6-methylpyridin-3-yl)methyl dihydrogen phosphate, 3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]-4-pyridinecarboxaldehyde, 3-hydroxy-5-(hydroxymethyl)-2-methylisonicotinaldehyde 5-phosphate, PLP, PYRIDOXAL-5'-PHOSPHATE, ... (5 more) |
| 2026-05-01T07:35:35.961041+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:32.051327+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C8H10NO6P; inchi=InChI=1S/C8H10NO6P/c1-5-8(11)7(3-10)6(2-9-5)4-15-1; smiles=[H]C(=O)c1c(COP(=O)(O)O)cnc(C)c1O | |
| 2026-05-02T03:12:17.977168+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.112670+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: VITAMIN_SOURCE (confidence: 1.00) | |
| 2026-06-09T05:23:46.824734+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Pyridoxal phosphate' -> "pyridoxal 5'-phosphate": synced to canonical CHEBI label (preferred_term 'Pyridoxal phosphate' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): VITAMIN_SOURCE -> nutritional_roles.VITAMIN_SOURCE | |
| 2026-08-27T03:16:39.519765+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 7/7 -> 10/10 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] | |
| 2026-08-30T04:48:06.233536+00:00 | claude_culturemech_alias_backfill | ADDED_SYNONYMS | Added 1 CultureMech recipe surface form(s) that folded onto this record's published label but were absent from MIM's label index, so CultureMech could not resolve them: 'pyridoxal-phosphate (Sigma Aldrich)' (x1 CultureMech mentions). Source: culturemech:output/ingredient_occurrences.tsv. |