Ontology mapping
- Primary identifier
-
CHEBI:131531 - Ontology label
- pyridoxamine hydrochloride
Nutritional roles
- Role
- VITAMIN_SOURCE
- Confidence
- 1.0
- Evidence
- Reference text
- CultureMech database (98 occurrences as 'Vitamin')
- Reference type
- DATABASE_ENTRY
- Url
- https://github.com/CultureBotAI/CultureMech
- Excerpt
- Role: Vitamin; Properties: Organic compound, Defined component, Simple component
- Curator note
- Widespread use in media formulations (98 occurrences). High confidence based on 'Defined component' property.
Synonyms (10)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| 4-(Aminomethyl)-5-hydroxy-6-methyl-3-pyridinemethanol hydrochloride | EXACT_SYNONYM | kg_microbe | |
| 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol hydrochloride | EXACT_SYNONYM | kg_microbe | |
| Pyridoxamine HCl | EXACT_SYNONYM | kg_microbe | |
| Pyridoxamine-HCl | EXACT_SYNONYM | kg_microbe | |
| Pyridoxamine·HCl | EXACT_SYNONYM | kg_microbe | |
| [3-hydroxy-5-(hydroxymethyl)-2-methylpyridin-4-yl]methanaminium chloride | EXACT_SYNONYM | kg_microbe | |
| pyridoxamine monohydrochloride | EXACT_SYNONYM | kg_microbe | |
| Role: Vitamin; Properties: Defined component, Simple component, Organic compound | RAW_TEXT | CultureMech | |
| Role: Vitamin; Properties: Organic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| Pyridoxamine・HCl | RAW_TEXT | culturemech:output/ingredient_occurrences.tsv |
Chemical properties
- Cas rn
- 5103-96-8
- Data source
- PubChem (via CHEBI:131531)
- Retrieval date
- 2026-04-09T00:32:50.689620+00:00
- Molecular formula
- C8H12N2O2.HCl
- Inchi
- InChI=1S/C8H12N2O2.ClH/c1-5-8(12)7(2-9)6(4-11)3-10-5;/h3,11-12H,2,4,9H2,1H3;1H
- Smiles
- Cc1ncc(CO)c(CN)c1O.Cl
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 112
- Distinct media
- 112
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T23:46:50.991171+00:00 | fetch_cas_rn_with_preprocessing | ADDED_CAS_RN | MAPPED | Added CAS-RN:5103-96-8 from PubChem API (ontology label) via name preprocessing (Pyridoxamine-HCl) |
| 2026-04-05T23:46:51.401977+00:00 | fetch_cas_rn_with_preprocessing | ADDED_CAS_RN | MAPPED | Added CAS-RN:5103-96-8 from PubChem API (ontology label) via name preprocessing (pyridoxamine-HCl) |
| 2026-04-09T00:32:50.689620+00:00 | enrich_mim_cas_rn_batch | CAS_RN_ADDED | MAPPED | Added CAS-RN 5103-96-8 from PubChem (via CHEBI:131531) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 7 synonyms from kg-microbe P4.4 enrichment: 4-(Aminomethyl)-5-hydroxy-6-methyl-3-pyridinemethanol hydrochloride, 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol hydrochloride, Pyridoxamine HCl, Pyridoxamine-HCl, Pyridoxamine·HCl, ... (2 more) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 6 synonyms from kg-microbe P4.4 enrichment: 4-(Aminomethyl)-5-hydroxy-6-methyl-3-pyridinemethanol hydrochloride, 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol hydrochloride, Pyridoxamine HCl, Pyridoxamine·HCl, [3-hydroxy-5-(hydroxymethyl)-2-methylpyridin-4-yl]methanaminium chloride, ... (1 more) |
| 2026-04-19T07:39:23.955331+00:00 | audit_mim_merge | MERGED_FROM_DUPLICATES | MAPPED | Absorbed 2 duplicate MIM record(s) into this one: Pyridoxamine-hcl.yaml, Pyridoxamine-hcl_2.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break. |
| 2026-05-01T07:35:35.976671+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:32.067946+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C8H12N2O2.HCl; inchi=InChI=1S/C8H12N2O2.ClH/c1-5-8(12)7(2-9)6(4-11)3-10; smiles=Cc1ncc(CO)c(CN)c1O.Cl | |
| 2026-05-02T03:12:17.995730+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.112687+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: VITAMIN_SOURCE (confidence: 1.00) | |
| 2026-06-09T05:23:46.825017+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Pyridoxamine hydrochloride' -> 'pyridoxamine hydrochloride': synced to canonical CHEBI label (preferred_term 'Pyridoxamine hydrochloride' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): VITAMIN_SOURCE -> nutritional_roles.VITAMIN_SOURCE | |
| 2026-08-27T03:16:39.519773+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 56/98 -> 112/112 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] | |
| 2026-08-30T04:48:06.233536+00:00 | claude_culturemech_alias_backfill | ADDED_SYNONYMS | Added 1 CultureMech recipe surface form(s) that folded onto this record's published label but were absent from MIM's label index, so CultureMech could not resolve them: 'Pyridoxamine・HCl' (x1 CultureMech mentions). Source: culturemech:output/ingredient_occurrences.tsv. |