Ontology mapping
- Primary identifier
-
CHEBI:16709 - Ontology label
- pyridoxine
- kg-microbe node
CHEBI:16709
Nutritional roles
- Role
- VITAMIN_SOURCE
- Confidence
- 1.0
- Evidence
- Reference type
- DATABASE_ENTRY
- Reference text
- Imported from CultureMech pipeline
- Curator note
- Original role text: Vitamin Source
Synonyms (21)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Cross-references: KEGG:pydxn | RAW_TEXT | CultureMech | |
| Role: Vitamin; Properties: Organic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| 2-Methyl-3-hydroxy-4,5-dihydroxymethyl-pyridin | EXACT_SYNONYM | kg_microbe | |
| 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine | EXACT_SYNONYM | kg_microbe | |
| 2-methyl-3-hydroxy-4,5-di(hydroxymethyl)pyridine | EXACT_SYNONYM | kg_microbe | |
| 2-methyl-3-hydroxy-4,5-dihydroxymethylpyridine | EXACT_SYNONYM | kg_microbe | |
| 2-methyl-4,5-bis(hydroxymethyl)-3-hydroxypyridine | EXACT_SYNONYM | kg_microbe | |
| 2-methyl-4,5-dimethylol-pyridin-3-ol | EXACT_SYNONYM | kg_microbe | |
| 3-hydroxy-2-picoline-4,5-dimethanol | EXACT_SYNONYM | kg_microbe | |
| 3-hydroxy-4,5-bis(hydroxymethyl)-2-methylpyridine | EXACT_SYNONYM | kg_microbe | |
| 3-hydroxy-4,5-dimethylol-alpha-picoline | EXACT_SYNONYM | kg_microbe | |
| 4,5-bis(hydroxymethyl)-2-methyl-pyridin-3-ol | EXACT_SYNONYM | kg_microbe | |
| 4,5-bis(hydroxymethyl)-2-methylpyridin-3-ol | EXACT_SYNONYM | kg_microbe | |
| 5-hydroxy-6-methyl-3,4-pyridinedimethanol | EXACT_SYNONYM | kg_microbe | |
| Pyridoxol | EXACT_SYNONYM | kg_microbe | |
| piridossina | EXACT_SYNONYM | kg_microbe | |
| pyridoxina | EXACT_SYNONYM | kg_microbe | |
| pyridoxinum | EXACT_SYNONYM | kg_microbe | |
| pyridoxolum | EXACT_SYNONYM | kg_microbe | |
| vitamin B6 | EXACT_SYNONYM | kg_microbe | |
| Pyridoxin | RAW_TEXT | merged_from_unmapped_duplicate_review_2026_05_11 |
Chemical properties
- Cas rn
- 65-23-6
- Data source
- PubChem API
- Retrieval date
- 2026-04-05T19:53:44.593673+00:00
- Molecular formula
- C8H11NO3
- Inchi
- InChI=1S/C8H11NO3/c1-5-8(12)7(4-11)6(3-10)2-9-5/h2,10-12H,3-4H2,1H3
- Smiles
- Cc1ncc(CO)c(CO)c1O
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 61
- Distinct media
- 61
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:53:44.593727+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:65-23-6 from PubChem API via name lookup (Pyridoxine) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 18 synonyms from kg-microbe P4.4 enrichment: 2-Methyl-3-hydroxy-4,5-dihydroxymethyl-pyridin, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, 2-methyl-3-hydroxy-4,5-di(hydroxymethyl)pyridine, 2-methyl-3-hydroxy-4,5-dihydroxymethylpyridine, 2-methyl-4,5-bis(hydroxymethyl)-3-hydroxypyridine, ... (13 more) |
| 2026-05-01T07:35:35.983659+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:32.074908+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C8H11NO3; inchi=InChI=1S/C8H11NO3/c1-5-8(12)7(4-11)6(3-10)2-9-5/h2; smiles=Cc1ncc(CO)c(CO)c1O | |
| 2026-05-02T03:12:18.003327+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-11T07:04:00Z | mediaingredientmech-agentic-curation LLM | ABSORBED_UNMAPPED_DUPLICATE | MAPPED | Absorbed duplicate unmapped record Pyridoxin.yaml (UNMAPPED_0503); OAK/OLS audit and local CHEBI representative support pyridoxine CHEBI:16709. |
| 2026-05-29T23:35:36.112693+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: VITAMIN_SOURCE (confidence: 1.00) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): VITAMIN_SOURCE -> nutritional_roles.VITAMIN_SOURCE | |
| 2026-08-27T03:16:39.519775+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 45/45 -> 61/61 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |