Ontology mapping
- Primary identifier
-
CHEBI:10983 - Notes
- Imported from CultureBotHT (compounds_to_cas.csv (no CAS-RN)). No CAS-RN or CHEBI mapping available; curator review needed.
- kg-microbe node
CHEBI:10983
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 0.8
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Inferred from curated media-role name pattern
- Curator note
- Provisional role from a curated name-pattern rule; review recommended.
Synonyms (2)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| (R)-3-hydroxybutyrate | RAW_TEXT | culturebotht | |
| (3R)-3-hydroxybutanoate | EXACT_SYNONYM | chebi_synonym_review |
Chemical properties
- Molecular formula
- C4H7O3
- Inchi
- InChI=1S/C4H8O3/c1-3(5)2-4(6)7/h3,5H,2H2,1H3,(H,6,7)/p-1
- Smiles
- CC(O)CC(=O)[O-]
- Data source
- CHEBI sqlite (oaklib)
Evidence (2)
DATABASE_MATCH
via CHEBI via OLS search (resolve_unmapped)
Auto-upgraded from UNMAPPED_0202; matched via '3-hydroxybutyrate' (name normalization); label-exact
CURATOR_JUDGMENT
via fix_stereoisomer_remaps
Re-mapped from achiral CHEBI:37054 to stereospecific CHEBI:10983 ((R)-3-hydroxybutyrate); the prior auto-upgrade collapsed the stereo prefix to the generic parent.
Occurrence statistics
- Total occurrences
- 0
- Distinct media
- 0
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-04-29T06:51:33.117170+00:00 | audit_add_remaining_culturebotht | CREATED_AS_UNMAPPED | UNMAPPED | Imported from CultureBotHT (compounds_to_cas.csv (no CAS-RN)). No CAS-RN or CHEBI mapping available; curator review needed. |
| 2026-05-02T00:41:18.351765+00:00 | resolve_unmapped | AUTO_UPGRADE_TO_CHEBI | primary UNMAPPED_0202 → CHEBI:37054 via name normalization to '3-hydroxybutyrate' | |
| 2026-05-02T03:12:11.731771+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-02T23:59:49.101881+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C4H7O3; inchi=InChI=1S/C4H8O3/c1-3(5)2-4(6)7/h3,5H,2H2,1H3,(H,6,; smiles=CC(O)CC(=O)[O-] | |
| 2026-06-02T07:01:19.251685+00:00 | fix_stereoisomer_remaps | CORRECTED | identifier CHEBI:37054 -> CHEBI:10983: enantiomer was sharing an achiral CHEBI parent with its mirror image. | |
| 2026-06-03T03:22:14.576674+00:00 | infer_roles_from_name_lists | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 0.80) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE |