Ontology mapping
- Primary identifier
-
CHEBI:33942 - Ontology label
- ribose
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Inferred from CHEBI ancestry: subclass/has_role of CHEBI:16646 (carbohydrate)
- Curator note
- Provisional role inferred from CHEBI is_a/has_role closure; review recommended.
- Role
- ENERGY_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Canonical energy substrate (catabolised for energy)
- Curator note
- Provisional ENERGY_SOURCE added alongside CARBON_SOURCE; review recommended.
Synonyms (2)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Rib | EXACT_SYNONYM | kg_microbe | |
| ribo-pentose | EXACT_SYNONYM | kg_microbe |
Chemical properties
- Data source
- PubChem API
- Retrieval date
- 2026-04-05T19:53:49.182037+00:00
- Molecular formula
- C5H10O5
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 6
- Distinct media
- 6
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:53:49.182062+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:200-059-4 from PubChem API via name lookup (Ribose) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 2 synonyms from kg-microbe P4.4 enrichment: Rib, ribo-pentose |
| 2026-05-01T07:35:36.077406+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:32.167249+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C5H10O5 | |
| 2026-05-02T03:12:18.124199+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-30T00:34:39.642428+00:00 | infer_roles_from_chebi_ancestry | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 0.70) | |
| 2026-06-04T05:38:59.201245+00:00 | infer_energy_source | ANNOTATED | Added media role: ENERGY_SOURCE (confidence: 0.70) | |
| 2026-06-09T05:23:46.827326+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Ribose' -> 'ribose': synced to canonical CHEBI label (preferred_term 'Ribose' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE; ENERGY_SOURCE -> nutritional_roles.ENERGY_SOURCE | |
| 2026-08-27T03:16:39.519804+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 4/4 -> 6/6 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |