Ontology mapping
- Primary identifier
-
CHEBI:16119 - Ontology label
- shikimic acid
- Notes
- Created from FEBA ontology enrichment workflow. Used in 10 FEBA media formulations.
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 0.8
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Inferred from curated media-role name pattern
- Curator note
- Provisional role from a curated name-pattern rule; review recommended.
Synonyms (6)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| (3R,4S,5R)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid | EXACT_SYNONYM | kg_microbe | |
| 3,4,5-Trihydroxy-1-cyclohexenecarboxylic acid | EXACT_SYNONYM | kg_microbe | |
| 3alpha,4alpha,5beta-trihydroxy-1-cyclohexene-1-carboxylic acid | EXACT_SYNONYM | kg_microbe | |
| L-shikimic acid | EXACT_SYNONYM | kg_microbe | |
| Shikimate | EXACT_SYNONYM | kg_microbe | |
| [3R-(3alpha,4alpha,5beta)]-3,4,5-trihydroxy-1-cyclohexene-1-carboxylic acid | EXACT_SYNONYM | kg_microbe |
Chemical properties
- Cas rn
- 138-59-0
- Data source
- FEBA ontology enrichment (via PubChem)
- Retrieval date
- 2026-04-07T10:19:58.227050+00:00
- Molecular formula
- C7H10O5
- Inchi
- InChI=1S/C7H10O5/c8-4-1-3(7(11)12)2-5(9)6(4)10/h1,4-6,8-10H,2H2,(H,11,12)/t4-,5-,6-/m1/s1
- Smiles
- O=C(O)C1=C[C@@H](O)[C@@H](O)[C@H](O)C1
Evidence (1)
CAS_RN_CROSS_REFERENCE
via PubChem
ChEBI ID CHEBI:16119 found via PubChem CAS-RN cross-reference
Occurrence statistics
- Total occurrences
- 10
- Distinct media
- 10
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-04-07T10:19:58.227037+00:00 | feba_ontology_enrichment_batch | CREATED | MAPPED | Created ingredient file from FEBA ontology enrichment batch with ChEBI ID CHEBI:16119 |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 6 synonyms from kg-microbe P4.4 enrichment: (3R,4S,5R)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid, 3,4,5-Trihydroxy-1-cyclohexenecarboxylic acid, 3alpha,4alpha,5beta-trihydroxy-1-cyclohexene-1-carboxylic acid, L-shikimic acid, Shikimate, ... (1 more) |
| 2026-05-01T07:35:36.150069+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:32.238712+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C7H10O5; inchi=InChI=1S/C7H10O5/c8-4-1-3(7(11)12)2-5(9)6(4)10/h1,; smiles=O=C(O)C1=C[C@@H](O)[C@@H](O)[C@H](O)C1 | |
| 2026-05-02T03:12:18.220387+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-06-03T03:22:14.595448+00:00 | infer_roles_from_name_lists | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 0.80) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE |