Sodium gluconate

Ontology mapping

Primary identifier: CHEBI:84997
Ontology label: sodium gluconate
kg-microbe node: CHEBI:84997

Nutritional roles

Role
CARBON_SOURCE
Confidence
0.8
Evidence
- Reference type
  COMPUTATIONAL_PREDICTION
  Reference text
  Inferred from curated media-role name pattern
  Curator note
  Provisional role from a curated name-pattern rule; review recommended.
Role
ENERGY_SOURCE
Confidence
0.7
Evidence
- Reference type
  COMPUTATIONAL_PREDICTION
  Reference text
  Canonical energy substrate (catabolised for energy)
  Curator note
  Provisional ENERGY_SOURCE added alongside CARBON_SOURCE; review recommended.

Synonyms (9)

Synonym	Type	Source
Properties: Defined component, Organic compound, Simple component	RAW_TEXT	CultureMech
Properties: Defined component, Simple component, Organic compound	RAW_TEXT	CultureMech
D-Gluconic acid, monosodium salt	EXACT_SYNONYM	kg_microbe
Gluconic acid sodium salt	EXACT_SYNONYM	kg_microbe
Monosodium D-gluconate	EXACT_SYNONYM	kg_microbe
Monosodium gluconate	EXACT_SYNONYM	kg_microbe
sodium (2R,3S,4R,5R)-2,3,4,5,6-pentahydroxyhexanoate	EXACT_SYNONYM	kg_microbe
Na-gluconate	EXACT_SYNONYM	merged_from_duplicate_mim_record
Na gluconate	EXACT_SYNONYM	merged_from_duplicate_mim_record

Chemical properties

Cas rn: 527-07-1
Data source: CultureBotHT compounds_to_cas.csv
Retrieval date: 2026-04-05T21:48:45.773167+00:00
Molecular formula: C6H11O7.Na
Inchi: InChI=1S/C6H12O7.Na/c7-1-2(8)3(9)4(10)5(11)6(12)13;/h2-5,7-11H,1H2,(H,12,13);/q;+1/p-1/t2-,3-,4+,5-;/m1./s1
Smiles: O=C([O-])[C@H](O)[C@@H](O)[C@H](O)[C@H](O)CO.[Na+]

Evidence (1)

DATABASE_MATCH via CultureMech

Imported from CultureMech pipeline, quality=DIRECT_MATCH

Occurrence statistics

Total occurrences: 20
Distinct media: 20

Curation history

Timestamp	Curator	Action	New status	Changes
2026-03-09T06:54:18.022301+00:00	import_from_culturemech	IMPORTED	MAPPED	Initial import from CultureMech pipeline
2026-04-05T21:48:45.773168+00:00	fetch_cas_rn_from_culturebot_csv	ADDED_CAS_RN	MAPPED	Added CAS-RN:527-07-1 from CultureBotHT compounds_to_cas.csv (matched: Sodium gluconate)
2026-04-05T21:48:45.774936+00:00	fetch_cas_rn_from_culturebot_csv	ADDED_CAS_RN	MAPPED	Added CAS-RN:527-07-1 from CultureBotHT compounds_to_cas.csv (matched: sodium gluconate)
2026-04-05T23:45:38.253011+00:00	fetch_cas_rn_with_preprocessing	ADDED_CAS_RN	MAPPED	Added CAS-RN:527-07-1 from PubChem API (preprocessed) via name preprocessing (Na-gluconate)
2026-04-09T00:32:50.689620+00:00	enrich_mim_cas_rn_batch	CAS_RN_ADDED	MAPPED	Added CAS-RN 527-07-1 from PubChem (via CHEBI:84997)
2026-04-18T00:00:00+00:00	cbclaw_kg_microbe_sweep LLM	ADDED_SYNONYMS	MAPPED	Added 5 synonyms from kg-microbe P4.4 enrichment: D-Gluconic acid, monosodium salt, Gluconic acid sodium salt, Monosodium D-gluconate, Monosodium gluconate, sodium (2R,3S,4R,5R)-2,3,4,5,6-pentahydroxyhexanoate
2026-04-18T00:00:00+00:00	cbclaw_kg_microbe_sweep LLM	ADDED_SYNONYMS	MAPPED	Added 6 synonyms from kg-microbe P4.4 enrichment: D-Gluconic acid, monosodium salt, Gluconic acid sodium salt, Monosodium D-gluconate, Monosodium gluconate, Sodium gluconate, ... (1 more)
2026-04-19T07:39:23.955331+00:00	audit_mim_merge	MERGED_FROM_DUPLICATES	MAPPED	Absorbed 3 duplicate MIM record(s) into this one: Na-gluconate.yaml, Na_Gluconate.yaml, Sodium_Gluconate_2.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break.
2026-05-01T07:35:36.265691+00:00	auto_classify_ingredient_type	AUTO_CLASSIFY_INGREDIENT_TYPE		set ingredient_type=SINGLE_INGREDIENT (CHEBI primary)
2026-05-01T08:08:32.357855+00:00	auto_classify_ingredient_type	AUTO_BACKFILL_CHEBI_CHEMISTRY		molecular_formula=C6H11O7.Na; inchi=InChI=1S/C6H12O7.Na/c7-1-2(8)3(9)4(10)5(11)6(12)13; smiles=O=C([O-])[C@H](O)[C@@H](O)[C@H](O)[C@H](O)CO.[Na+]
2026-05-02T03:12:18.391999+00:00	auto_classify_ingredient_type	AUTO_CLASSIFY_INGREDIENT_TYPE		set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula))
2026-06-03T03:22:14.596245+00:00	infer_roles_from_name_lists	ANNOTATED		Added media role: CARBON_SOURCE (confidence: 0.80)
2026-06-04T05:38:59.201291+00:00	infer_energy_source	ANNOTATED		Added media role: ENERGY_SOURCE (confidence: 0.70)
2026-06-09T05:23:46.834575+00:00	correct_stale_ontology_labels.py	CORRECTED		ontology_label 'Sodium gluconate' -> 'sodium gluconate': synced to canonical CHEBI label (preferred_term 'Sodium gluconate' unchanged).
2026-07-20T00:00:00+00:00	migrate_media_roles_to_facets	ANNOTATED		Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE; ENERGY_SOURCE -> nutritional_roles.ENERGY_SOURCE
2026-08-27T03:16:39.519842+00:00	refresh_occurrence_statistics	CORRECTED		occurrence_statistics 15/15 -> 20/20 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257]