Ontology mapping
- Primary identifier
-
CHEBI:75228 - Ontology label
- sodium lactate
- kg-microbe node
CHEBI:75228
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 1.0
- Evidence
- Reference type
- DATABASE_ENTRY
- Reference text
- Imported from CultureMech pipeline
- Curator note
- Original role text: Carbon Source
- Role
- ENERGY_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Canonical energy substrate (catabolised for energy)
- Curator note
- Provisional ENERGY_SOURCE added alongside CARBON_SOURCE; review recommended.
Synonyms (29)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Role: Carbon source; Properties: Defined component, Organic compound, Simple component | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Defined component, Simple component, Organic compound | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Organic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Organic compound, Simple component, Defined component | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Simple component, Defined component, Organic compound | RAW_TEXT | CultureMech | |
| 1 M Sodium lactate | EXACT_SYNONYM | kg_microbe | |
| 2-Hydroxypropanoic acid, monosodium salt | EXACT_SYNONYM | kg_microbe | |
| DL-Na-lactate | EXACT_SYNONYM | kg_microbe | |
| E325 | EXACT_SYNONYM | kg_microbe | |
| Lactic acid sodium salt | EXACT_SYNONYM | kg_microbe | |
| Lactic acid, monosodium salt | EXACT_SYNONYM | kg_microbe | |
| Mediject L | EXACT_SYNONYM | kg_microbe | |
| Monosodium 2-hydroxypropanoate | EXACT_SYNONYM | kg_microbe | |
| Monosodium lactate | EXACT_SYNONYM | kg_microbe | |
| Na-(DL)-lactate | EXACT_SYNONYM | kg_microbe | |
| Na-DL-lactate | EXACT_SYNONYM | kg_microbe | |
| Sodium alpha-hydroxypropionate | EXACT_SYNONYM | kg_microbe | |
| sodium 2-hydroxypropanoate | EXACT_SYNONYM | kg_microbe | |
| Na-lactate | EXACT_SYNONYM | merged_from_duplicate_mim_record | |
| Sodium DL-lactate | EXACT_SYNONYM | merged_from_duplicate_mim_record | |
| Role: Carbon source; Properties: Simple component, Organic compound, Defined component | RAW_TEXT | CultureMech | |
| (after autoclaving) | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Defined component, Organic compound, Solution | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Organic compound, Solution, Defined component | RAW_TEXT | CultureMech | |
| Role: Carbon source; Properties: Solution, Organic compound, Defined component | RAW_TEXT | CultureMech | |
| Lactate (sodium salt) | RAW_TEXT | CultureMech | |
| 1 % Sodium Lactate | RAW_TEXT | microbedecoder | |
| D,L-lactic acid, sodium salt | RAW_TEXT | MERGED_FROM_CHEBI:29958 (#346) | |
| (L-lactic acid, sodium salt) | RAW_TEXT | MERGED_FROM_CHEBI:29958 (#346) |
Chemical properties
- Cas rn
- 72-17-3
- Data source
- OAK/CHEBI xref
- Retrieval date
- 2026-04-19T07:39:40.088267+00:00
- Molecular formula
- C3H5O3.Na
- Inchi
- InChI=1S/C3H6O3.Na/c1-2(4)3(5)6;/h2,4H,1H3,(H,5,6);/q;+1/p-1
- Smiles
- CC(O)C(=O)[O-].[Na+]
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 283
- Distinct media
- 283
- Source occurrences
- Source
- microbedecoder
- Count
- 2
- Source columns
- BacDive_Antibiotic_resistance|BacDive_Antibiotic_sensitivity
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T21:48:44.656050+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:50-21-5 from CultureBotHT compounds_to_cas.csv (matched: 1 M Sodium lactate) |
| 2026-04-05T21:48:45.783503+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:50-21-5 from CultureBotHT compounds_to_cas.csv (matched: Sodium lactate) |
| 2026-04-05T21:48:45.785649+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:50-21-5 from CultureBotHT compounds_to_cas.csv (matched: sodium lactate) |
| 2026-04-05T21:48:45.787613+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:50-21-5 from CultureBotHT compounds_to_cas.csv (matched: Sodium Lactate) |
| 2026-04-05T23:44:10.150646+00:00 | fetch_cas_rn_with_preprocessing | ADDED_CAS_RN | MAPPED | Added CAS-RN:72-17-3 from PubChem API (preprocessed) via name preprocessing (DL-Na-lactate) |
| 2026-04-05T23:45:29.169142+00:00 | fetch_cas_rn_with_preprocessing | ADDED_CAS_RN | MAPPED | Added CAS-RN:72-17-3 from PubChem API (preprocessed) via name preprocessing (Na-(DL)-lactate) |
| 2026-04-05T23:45:34.819169+00:00 | fetch_cas_rn_with_preprocessing | ADDED_CAS_RN | MAPPED | Added CAS-RN:72-17-3 from PubChem API (preprocessed) via name preprocessing (Na-DL-lactate) |
| 2026-04-05T23:45:40.283369+00:00 | fetch_cas_rn_with_preprocessing | ADDED_CAS_RN | MAPPED | Added CAS-RN:72-17-3 from PubChem API (preprocessed) via name preprocessing (Na-lactate) |
| 2026-04-09T00:32:50.689620+00:00 | enrich_mim_cas_rn_batch | CAS_RN_ADDED | MAPPED | Added CAS-RN 50-21-5 from CultureBotHT/compounds_to_cas.csv |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 13 synonyms from kg-microbe P4.4 enrichment: 1 M Sodium lactate, 2-Hydroxypropanoic acid, monosodium salt, DL-Na-lactate, E325, Lactic acid sodium salt, ... (8 more) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 14 synonyms from kg-microbe P4.4 enrichment: 1 M Sodium lactate, 2-Hydroxypropanoic acid, monosodium salt, DL-Na-lactate, E325, Lactic acid sodium salt, ... (9 more) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 12 synonyms from kg-microbe P4.4 enrichment: 2-Hydroxypropanoic acid, monosodium salt, DL-Na-lactate, E325, Lactic acid sodium salt, Lactic acid, monosodium salt, ... (7 more) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 13 synonyms from kg-microbe P4.4 enrichment: 1 M Sodium lactate, 2-Hydroxypropanoic acid, monosodium salt, E325, Lactic acid sodium salt, Lactic acid, monosodium salt, ... (8 more) |
| 2026-04-19T07:39:40.088622+00:00 | audit_mim_merge | MERGED_FROM_DUPLICATES | MAPPED | Absorbed 8 duplicate MIM record(s) into this one: Na-dl-lactate.yaml, Na-lactate.yaml, 1_M_Sodium_Lactate.yaml, Sodium_Dl-lactate.yaml, Na-_Dl-lactate.yaml, Dl-na-lactate.yaml, Sodium_Lactate_2.yaml, Sodium_Lactate_3.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break. |
| 2026-04-19T07:39:40.088267+00:00 | audit_resolve_risky_cas_rn | RESOLVED_CAS_RN_CONFLICT | MAPPED | CAS-RN conflict across merged group (50-21-5|72-17-3) resolved via OAK canonical xref: 72-17-3 (match) |
| 2026-05-01T07:35:36.292682+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:32.385969+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C3H5O3.Na; inchi=InChI=1S/C3H6O3.Na/c1-2(4)3(5)6;/h2,4H,1H3,(H,5,6); smiles=CC(O)C(=O)[O-].[Na+] | |
| 2026-05-02T03:12:18.427370+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-05T00:00:00+00:00 | ingredient_mapping_review_2026_05_05 | MERGED | MAPPED | Absorbed duplicate record Lactate_(sodium_Salt).yaml (CHEBI:26714) into Sodium_Lactate.yaml; source occurrence counts and synonyms were merged. Corrected erroneous generic sodium salt mapping by merging into sodium lactate CHEBI:75228 representative. |
| 2026-05-29T23:35:36.112839+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 1.00) | |
| 2026-06-04T05:38:59.201302+00:00 | infer_energy_source | ANNOTATED | Added media role: ENERGY_SOURCE (confidence: 0.70) | |
| 2026-06-09T05:23:46.835326+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Sodium lactate' -> 'sodium lactate': synced to canonical CHEBI label (preferred_term 'Sodium lactate' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE; ENERGY_SOURCE -> nutritional_roles.ENERGY_SOURCE | |
| 2026-08-05T00:01:30.894952+00:00 | microbedecoder-residual-dispositions LLM | MERGED_FROM_UNMAPPED_DUPLICATE | Absorbed UNMAPPED_0634 '1 % Sodium Lactate' as a RAW_TEXT synonym -- concentration-prefixed duplicate of sodium lactate. No new SSSOM row; CHEBI:75228 is already mapped. Source: kgmicrobe.trait:1_sodium_lactate. | |
| 2026-08-13T00:00:00+00:00 | fix_comma_split_d_record | MERGED_FROM | Absorbed the record labelled 'D' (#346). The label 'D' is not an ingredient name: it is the head of a comma-split. This record's own RAW_TEXT synonym, carried over from CultureMech, is '(L-lactic acid, sodium salt)' — so the source label was 'D,L-lactic acid, sodium salt', split at the first comma into 'D' and the remainder. That is DL-lactic acid sodium salt, i.e. stereo-unspecified sodium lactate, which is CHEBI:75228 and is already held by this record. Everything downstream of the split was then derived from the orphaned 'D': cas_rn 138-86-3 (LIMONENE) came from fuzzy-matching 'D' in CultureBotHT compounds_to_cas.csv, and the CHEBI:29958 'L-aspartic acid residue' mapping from matching the one-letter amino-acid code for aspartate. Three fields, three unrelated substances, all artefacts of one split. Occurrences 190/136 + 1/1 -> 191/137. Both the raw split label and the reconstructed source label kept as RAW_TEXT synonyms. | |
| 2026-08-27T03:16:39.519849+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 137/191 -> 283/283 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |