Ontology mapping
- Primary identifier
-
cas:7791-07-3 - Ontology term
-
CHEBI:132103— sodium perchlorate - Ontology label
- sodium perchlorate
Cellular metabolic roles
- Role
- ELECTRON_ACCEPTOR
- Confidence
- 0.6
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Assigned by in-session Claude reasoning (no external API)
- Curator note
- Provisional in-session LLM role assignment; review recommended.
- Reference type
- PEER_REVIEWED_PUBLICATION
- Doi
- 10.1128/AEM.68.9.4425-4430.2002
- Url
- https://pmc.ncbi.nlm.nih.gov/articles/PMC124121/
- Reference text
- Chaudhuri et al. (2002). Environmental factors that control microbial perchlorate reduction.
- Curator note
- Extending the demonstrated sodium-perchlorate role to the dissolved monohydrate is a chemical inference about perchlorate supply. The paper does not identify the monohydrate reagent or establish solid-form identity.
- Metabolic context
- Dissolved perchlorate acceptor for Dechlorosoma suillum PS and Dechloromonas agitata CKB under the studied anoxic, acetate-fed conditions.
Chemical properties
- Cas rn
- 7791-07-3
- Data source
- CultureBotHT compounds_to_cas.csv
- Retrieval date
- 2026-04-29T06:51:33.117170+00:00
- Molecular formula
- ClH2NaO5
- Smiles
- O.[O-]Cl(=O)(=O)=O.[Na+]
- Inchi
- InChI=1S/ClHO4.Na.H2O/c2-1(3,4)5;;/h(H,2,3,4,5);;1H2/q;+1;/p-1
- Pubchem cid
- 516899
Evidence (3)
Imported from CultureBotHT. CAS-RN 7791-07-3 present, but no CHEBI entry exists (checked OAK CHEBI sqlite + PubChem CID synonyms). FEBA/Hans80 panels: Hans80metals, FEBA_stress. Used in 2 CultureBot media; samples: ALP defined perchlorate, ALP_defined_perchlorate. Curator can promote to a CHEBI primary if/when CHEBI adds the term.
Parent class identified via stem-substring; matched_via='Sodium perchlorate monohydrate'
mapping_quality NARROW_MATCH -> CLOSE_MATCH, predicate skos:narrowMatch -> skos:closeMatch. narrowMatch asserts this record is *narrower in meaning* than CHEBI:132103 ('sodium perchlorate') — a subsumption ChEBI itself denies: it files hydrates under CHEBI:35505 'hydrate', never under the anhydrous compound, which is not an ancestor even transitively. A hydrate is a distinct substance containing the anhydrous form, not a specialization of it. closeMatch claims similarity without subsumption. The ontology_id and the record's own identifier are unchanged.
Occurrence statistics
- Total occurrences
- 1
- Distinct media
- 1
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-04-29T06:51:33.117170+00:00 | audit_add_remaining_culturebotht | CREATED_FROM_CAS_FALLBACK | MAPPED | Created with cas:7791-07-3 as primary identifier; no CHEBI entry exists for this compound. |
| 2026-05-01T07:35:36.333317+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (cas: primary (defined chemical)) | |
| 2026-05-02T02:55:19.817943+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_PUBCHEM_CHEMISTRY | molecular_formula=ClH2NaO5; smiles=O.[O-]Cl(=O)(=O)=O.[Na+]; inchi=InChI=1S/ClHO4.Na.H2O/c2-1(3,4)5;;/h(H,2,3,4,5);;1 | |
| 2026-05-02T03:12:18.482136+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-02T05:01:16.847686+00:00 | backfill_parent_terms | BACKFILL_PARENT_CHEBI | set ontology_mapping parent=CHEBI:132103 (stem-substring) | |
| 2026-06-09T04:56:30.248215+00:00 | claude_in_session_curation | ANNOTATED | Added media role: ELECTRON_ACCEPTOR (confidence: 0.60) | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): ELECTRON_ACCEPTOR -> cellular_metabolic_roles.ELECTRON_ACCEPTOR | |
| 2026-08-13T00:00:00+00:00 | regrade_hydrate_to_close_match | REGRADED_HYDRATE_TO_CLOSE_MATCH | mapping_quality NARROW_MATCH -> CLOSE_MATCH (#342); a hydrate is not subsumed by its anhydrous form, and ChEBI does not model it as such. | |
| 2026-08-27T03:16:39.519868+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 2/2 -> 1/1 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] | |
| 2026-09-22T02:06:34+00:00 | codex_issue_710_semantic_evidence_review LLM | CORRECTED_ROLE_EVIDENCE | Added inspected primary-publication support and bounded organism/condition context to the cellular metabolic role (#710). Retained original computational provenance and confidence. See reports/semantic_review_20260921/resolution/roles/cellular-role-plan.json for the assertion-specific interpretation. |