Ontology mapping
- Primary identifier
-
CHEBI:26806 - Ontology label
- succinate
- kg-microbe node
CHEBI:26806
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 0.8
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Inferred from curated media-role name pattern
- Curator note
- Provisional role from a curated name-pattern rule; review recommended.
- Role
- ENERGY_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Canonical energy substrate (catabolised for energy)
- Curator note
- Provisional ENERGY_SOURCE added alongside CARBON_SOURCE; review recommended.
Synonyms (7)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Cross-references: KEGG:succ | RAW_TEXT | CultureMech | |
| Role: Growth factor; Properties: Organic compound, Defined component, Simple component | RAW_TEXT | CultureMech | |
| Na Succinate | EXACT_SYNONYM | kg_microbe | |
| Na-succinate | EXACT_SYNONYM | kg_microbe | |
| succinate anion | EXACT_SYNONYM | kg_microbe | |
| succinates | EXACT_SYNONYM | kg_microbe | |
| succinic acid anion | EXACT_SYNONYM | kg_microbe |
Chemical properties
- Cas rn
- 56-14-4
- Data source
- PubChem API
- Retrieval date
- 2026-04-05T19:53:57.621764+00:00
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 20
- Distinct media
- 20
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:53:57.621820+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:56-14-4 from PubChem API via name lookup (Succinate) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 5 synonyms from kg-microbe P4.4 enrichment: Na Succinate, Na-succinate, succinate anion, succinates, succinic acid anion |
| 2026-05-01T07:35:36.463140+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-02T03:12:18.644758+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-06-03T03:22:14.597322+00:00 | infer_roles_from_name_lists | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 0.80) | |
| 2026-06-04T05:38:59.201348+00:00 | infer_energy_source | ANNOTATED | Added media role: ENERGY_SOURCE (confidence: 0.70) | |
| 2026-06-09T05:23:46.839177+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Succinate' -> 'succinate': synced to canonical CHEBI label (preferred_term 'Succinate' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE; ENERGY_SOURCE -> nutritional_roles.ENERGY_SOURCE | |
| 2026-08-27T03:16:39.519914+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 18/18 -> 20/20 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |