Ontology mapping
- Primary identifier
-
CHEBI:27082 - Ontology label
- trehalose
Nutritional roles
- Role
- CARBON_SOURCE
- Confidence
- 1.0
- Evidence
- Reference type
- DATABASE_ENTRY
- Reference text
- Imported from CultureMech pipeline
- Curator note
- Original role text: Carbon Source
- Role
- ENERGY_SOURCE
- Confidence
- 0.7
- Evidence
- Reference type
- COMPUTATIONAL_PREDICTION
- Reference text
- Canonical energy substrate (catabolised for energy)
- Curator note
- Provisional ENERGY_SOURCE added alongside CARBON_SOURCE; review recommended.
Synonyms (4)
| Synonym | Type | Source | Occurrences |
|---|---|---|---|
| Role: Carbon source; Properties: Defined component, Simple component, Organic compound | RAW_TEXT | CultureMech | |
| D-Trehalose | EXACT_SYNONYM | kg_microbe | |
| D(+)-Trehalose | EXACT_SYNONYM | merged_from_duplicate_mim_record | |
| Role: Carbon source; Properties: Organic compound, Defined component, Simple component | RAW_TEXT | CultureMech |
Chemical properties
- Cas rn
- 52613-20-4
- Data source
- PubChem (via CHEBI:27082)
- Retrieval date
- 2026-04-09T00:32:50.689620+00:00
- Molecular formula
- C12H22O11
- Inchi
- InChI=1S/C12H22O11/c13-1-3-5(15)7(17)9(19)11(21-3)23-12-10(20)8(18)6(16)4(2-14)22-12/h3-20H,1-2H2/t3-,4-,5-,6-,7+,8+,9-,10-,11?,12?/m1/s1
- Smiles
- OC[C@H]1OC(OC2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@@H]1O
Evidence (1)
DATABASE_MATCH
via CultureMech
Imported from CultureMech pipeline, quality=DIRECT_MATCH
Occurrence statistics
- Total occurrences
- 15
- Distinct media
- 15
Curation history
| Timestamp | Curator | Action | New status | Changes |
|---|---|---|---|---|
| 2026-03-09T06:54:18.022301+00:00 | import_from_culturemech | IMPORTED | MAPPED | Initial import from CultureMech pipeline |
| 2026-04-05T19:51:46.107889+00:00 | fetch_cas_rn_from_pubchem | ADDED_CAS_RN | MAPPED | Added CAS-RN:99-20-7 from PubChem API via name lookup (D-Trehalose) |
| 2026-04-05T21:48:44.968892+00:00 | fetch_cas_rn_from_culturebot_csv | ADDED_CAS_RN | MAPPED | Added CAS-RN:6138-23-4 from CultureBotHT compounds_to_cas.csv (matched: D-trehalose) |
| 2026-04-05T23:44:04.273096+00:00 | fetch_cas_rn_with_preprocessing | ADDED_CAS_RN | MAPPED | Added CAS-RN:99-20-7 from PubChem API (preprocessed) via name preprocessing (D(+)-Trehalose) |
| 2026-04-09T00:32:50.689620+00:00 | enrich_mim_cas_rn_batch | CAS_RN_ADDED | MAPPED | Added CAS-RN 52613-20-4 from PubChem (via CHEBI:27082) |
| 2026-04-18T00:00:00+00:00 | cbclaw_kg_microbe_sweep LLM | ADDED_SYNONYMS | MAPPED | Added 1 synonyms from kg-microbe P4.4 enrichment: D-Trehalose |
| 2026-04-19T07:39:40.088622+00:00 | audit_mim_merge | MERGED_FROM_DUPLICATES | MAPPED | Absorbed 3 duplicate MIM record(s) into this one: D_-trehalose.yaml, D-trehalose.yaml, D-trehalose_2.yaml. Synonyms, curation_history, and occurrence counts were unioned/summed; winner selected by highest occurrence count with preferred_term readability tie-break. |
| 2026-04-19T07:39:40.088267+00:00 | audit_resolve_risky_cas_rn | RESOLVED_CAS_RN_CONFLICT | MAPPED | CAS-RN conflict across merged group (52613-20-4|6138-23-4|99-20-7) resolved via OAK canonical xref: UNKNOWN (no_oak_cas) |
| 2026-05-01T07:35:36.687609+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (CHEBI primary) | |
| 2026-05-01T08:08:32.769369+00:00 | auto_classify_ingredient_type | AUTO_BACKFILL_CHEBI_CHEMISTRY | molecular_formula=C12H22O11; inchi=InChI=1S/C12H22O11/c13-1-3-5(15)7(17)9(19)11(21-3); smiles=OC[C@H]1OC(OC2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[ | |
| 2026-05-02T03:12:18.953187+00:00 | auto_classify_ingredient_type | AUTO_CLASSIFY_INGREDIENT_TYPE | set ingredient_type=SINGLE_INGREDIENT (chemical structure populated (molecular_formula)) | |
| 2026-05-29T23:35:36.113209+00:00 | extract_roles_from_synonyms | ANNOTATED | Added media role: CARBON_SOURCE (confidence: 1.00) | |
| 2026-06-04T05:38:59.201386+00:00 | infer_energy_source | ANNOTATED | Added media role: ENERGY_SOURCE (confidence: 0.70) | |
| 2026-06-09T05:23:46.845407+00:00 | correct_stale_ontology_labels.py | CORRECTED | ontology_label 'Trehalose' -> 'trehalose': synced to canonical CHEBI label (preferred_term 'Trehalose' unchanged). | |
| 2026-07-20T00:00:00+00:00 | migrate_media_roles_to_facets | ANNOTATED | Migrated legacy media_roles to role facets (#128): CARBON_SOURCE -> nutritional_roles.CARBON_SOURCE; ENERGY_SOURCE -> nutritional_roles.ENERGY_SOURCE | |
| 2026-08-27T03:16:39.519996+00:00 | refresh_occurrence_statistics | CORRECTED | occurrence_statistics 11/11 -> 15/15 (media_count/total_occurrences), derived from distinct CultureMech recipe ids in the #337 occurrence table. The prior values came from the importer retired in #453, whose media_count counted a list truncated to 50 examples (#449). [source=ingredient_occurrences.tsv culturemech_rev=15a4da5c08 rows=194137 distinct_recipes=15257] |