Bordet-Gengou-Agar-Base

UNMAPPED_0341 defined medium UNMAPPED

Ontology mapping

Primary identifier
UNMAPPED_0341
Notes
Imported from mim-queue (source_id=mediadive.ingredient:2112); no CAS-RN or CHEBI/NCIT match. Reviewed on 2026-05-11 as an agar base preparation pending product- or recipe-level curation.

Synonyms (2)

SynonymTypeSourceOccurrences
Bordet-Gengou-Agar-Base RAW_TEXT mim-queue
Bordet-Gengou Agar Base (BD 248200) CATALOG_VARIANT culturemech:output/ingredient_occurrences.tsv

Occurrence statistics

Total occurrences
0
Distinct media
0

Curation history

TimestampCuratorActionNew statusChanges
2026-04-30T18:43:03.698454+00:00 audit_import_ingredients[mim-queue] CREATED_AS_UNMAPPED UNMAPPED Imported from mim-queue (source_id=mediadive.ingredient:2112); no CAS-RN or CHEBI/NCIT match. Curator review needed.
2026-05-11T19:05:00Z mediaingredientmech-agentic-curation LLM CLASSIFIED_UNDEFINED_MIXTURE UNMAPPED Classified as a Bordet-Gengou agar base preparation and left unmapped pending product- or recipe-level curation.
2026-07-05T00:00:00+00:00 cbclaw_media_modeling_114 LLM RECLASSIFY_INGREDIENT_TYPE ingredient_type UNDEFINED_MIXTURE -> DEFINED_MEDIUM: this is a complete culture-medium/agar/broth formulation (a medium), not an ingredient-level mixture.
2026-08-06T00:00:00+00:00 edison_literature_identity LLM ANNOTATED Edison LITERATURE (PaperQA3) identity research; report at research/ingredients/Bordet-Gengou-Agar-Base-edison-literature.md (local artifact — research/ is gitignored, so the findings are quoted here rather than linked). Report verdict: **Recommended identity:** a named **culture-medium agar-base formulation**, not a single chemical, salt, hydrate, buffer, or chemically defined substance. The source terminology distinguishes “Bordet-Gengou Agar,” “Bordet-Gengou Medium,” and a selective medium prepared “with Bordet-Gengou Agar Base,” supporting a meaningful boundary between the base and finished or supplemented media. The same han No ontology CURIE was proposed. Recorded as provenance only — no grounding applied from this run. Edison's recommendations are deliberately conservative, and a plausible identifier promoted by a mechanism that never decided anything is what #203 and #263 exist to undo. Any CURIE above is a curator's to accept or reject.
2026-08-30T06:20:04.233651+00:00 claude_culturemech_alias_backfill ADDED_SYNONYMS Added 1 CultureMech recipe surface form(s) that folded onto this record's published label but were absent from MIM's label index, so CultureMech could not resolve them: 'Bordet-Gengou Agar Base (BD 248200)' (x1 CultureMech mentions). Source: culturemech:output/ingredient_occurrences.tsv.
2026-06-16T00:00:00+00:00 promote_resolved_unmapped PROMOTED_TO_MAPPED MAPPED Promoted UNMAPPED_0341 -> MICRO:0002398 "Bordet Gengou Agar Base" (SYNONYM_MATCH); mapping_status UNMAPPED -> MAPPED, SSSOM row added.
2026-08-30T08:20:52.193944+00:00 claude_culturemech_residual_grounding DEMOTED_TO_UNMAPPED UNMAPPED Returned to UNMAPPED: MICRO:0002398 is `is_defining_ontology=false` in OLS4 and carries the malformed IRI http://purl.obolibrary.org/obo/MicrO.owl/MICRO_0002398. MicrO has ~1,472 such classes; they do not round-trip, so kg-microbe's ontology transform would not produce the term and the published row would dangle. curie.py gates these behind MICRO_VERIFIED and this id is deliberately not on it. The medium is real and the label matches; only this accession is unusable.