CMC + PY + Horse Serum

UNMAPPED_0740 AMBIGUOUS

Ontology mapping

Primary identifier
UNMAPPED_0740
Notes
MicrobeDecoder flattened separate Filifactor villosus culture contexts into CMC + PY + Horse Serum. Love et al. 1979 (doi:10.1099/00207713-29-3-241) describes cooked meat-carbohydrate and peptone-yeast extract cultures supplemented with horse serum. CMC is not carboxymethylcellulose here. This source expression is retained as AMBIGUOUS until separate source preparations are represented; it has no asserted single-mixture components or ontology identity.

Synonyms (1)

SynonymTypeSourceOccurrences
CMC + PY + Horse Serum RAW_TEXT microbedecoder

Occurrence statistics

Total occurrences
0
Distinct media
0
Source occurrences
  • Source
    microbedecoder
    Count
    1
    Source columns
    bergey:substrates

Curation history

TimestampCuratorActionNew statusChanges
2026-08-04T02:54:09.684805+00:00 audit_import_ingredients[microbedecoder] CREATED_AS_UNMAPPED UNMAPPED Imported from microbedecoder (source_id=kgmicrobe.compound:cmc_py_horse_serum); no CAS-RN or CHEBI/NCIT match. Curator review needed.
2026-08-05T00:01:30.894952+00:00 microbedecoder-residual-dispositions LLM FLAGGED_NEEDS_EXPERT NEEDS_EXPERT Not a single-compound grounding target: multi-component blend or named medium; no single ontology term grounds it -- needs decomposition into constituents.
2026-08-06T00:00:00+00:00 edison_literature_identity LLM ANNOTATED Edison LITERATURE (PaperQA3) identity research; report at research/ingredients/CMC_PY_Horse_Serum-edison-literature.md (local artifact — research/ is gitignored, so the findings are quoted here rather than linked). Report verdict: **Recommended interpretation:** a **composite culture-medium recipe shorthand**, not a single chemical, salt/hydrate, commercial product, or uniquely defined named medium. The most defensible decomposition is: CURIEs discussed: UBERON:0001977. Recorded as provenance only — no grounding applied from this run. Edison's recommendations are deliberately conservative, and a plausible identifier promoted by a mechanism that never decided anything is what #203 and #263 exist to undo. Any CURIE above is a curator's to accept or reject.
2026-08-14T00:00:00+00:00 decompose_substrate_combinations DECOMPOSED_TO_COMPONENTS MAPPED UNMAPPED_0740 -> kgmicrobe.ingredient:cmc_py_horse_serum (FALLBACK_REGISTRY). The label enumerates its own constituents, so this is a decomposition rather than a mapping: no ontology has a term for 'CMC + PY + Horse Serum', and none could — a combination is not a substance. Minted under the #288 STOCK_SOLUTION convention and split on '+', which transcribes the label rather than inferring anything. 2 of 3 constituents resolve to existing MIM records via docs/data/label_index.csv; PY carries no component_id because MIM has no record for it. ingredient_type=UNDEFINED_MIXTURE because at least one constituent is itself an undefined preparation. No concentrations are recorded: the label states none.
2026-08-14T00:00:00+00:00 apply_curated_decompositions REPLACED_COMPONENTS_WITH_CURATED components replaced with the curated research decomposition, superseding the label split. Components taken from the curated microbedecoder research decomposition (mappings/microbedecoder_residual_research_decomposition.tsv, strategy=split): the label names its constituents. 4 constituent(s), 4 carrying an identifier. That file was produced by the research pass and never written into the records; this applies it. It resolves constituents a label split cannot — abbreviations such as PY, and named media such as BHI, state no composition to split on. ingredient_type=UNDEFINED_MIXTURE. No concentrations are recorded: the curated row states none.
2026-08-15T00:00:00+00:00 move_mapped_out_of_unmapped_collection MOVED_TO_MAPPED_COLLECTION Moved from unmapped_ingredients.yaml to mapped_ingredients.yaml (#370). The record was already MAPPED; it had been promoted in place by a path that does not move between collections, and reconcile_sssom reads only the mapped collection — so its mapping was curated but unpublished.
2026-08-24T00:00:00+00:00 migrate_component_partonomy TYPED_COMPONENT_PARTONOMY #369: added method/evidence/completeness and explicit reference scope to 4 existing component(s) (EXTERNAL_TERM, MIM_CATALOG); constituent names, identifiers, and concentrations were not changed.
2026-09-21T00:00:00+00:00 mim-semantic-evidence-review LLM CORRECTED AMBIGUOUS #710: original species-description evidence disproves carboxymethylcellulose expansion and a single CMC/PY/serum mixture. Withdrew all four invented component edges and fallback identity, restored UNMAPPED_0740, marked AMBIGUOUS and moved to unmapped. Kept original raw label; full withdrawn claims and prior source record are preserved in reports/semantic_review_20260921/resolution/components/before-records.json.