ProposedExperiment

Name

ProposedExperiment

Description

A lightweight, domain-neutral sketch of an experiment or analysis that could resolve a knowledge gap. Records the idea and how its outcome would decide the gap; intentionally simpler than a full study design.

From schema

https://w3id.org/kg-microbe/mech-shared

Attributes

Experiment id

Name: experiment_id
Description: Stable local id (optional; for cross-reference).
From schema: https://w3id.org/kg-microbe/mech-shared

Name

Name: name
From schema: https://w3id.org/kg-microbe/mech-shared
Recommended: True

Description

Name: description
From schema: https://w3id.org/kg-microbe/mech-shared

Approach

Name: approach
Description: Method/assay in brief (e.g. "defined-coculture growth assay", "isolate WGS").
From schema: https://w3id.org/kg-microbe/mech-shared

Model systems

Name: model_systems
Description: Systems to use (e.g. isolate, enrichment, defined coculture, metagenome).
From schema: https://w3id.org/kg-microbe/mech-shared
Multivalued: True

Perturbations

Name: perturbations
Description: Interventions applied (e.g. gene knockout, nutrient removal).
From schema: https://w3id.org/kg-microbe/mech-shared
Multivalued: True

Readouts

Name: readouts
Description: What would be measured.
From schema: https://w3id.org/kg-microbe/mech-shared
Multivalued: True

Decision criterion

Name: decision_criterion
Description: The observation that would settle the question.
From schema: https://w3id.org/kg-microbe/mech-shared

Would support

Name: would_support
Description: Outcome that would support the hypothesis/assertion.
From schema: https://w3id.org/kg-microbe/mech-shared

Would refute

Name: would_refute
Description: Outcome that would refute it.
From schema: https://w3id.org/kg-microbe/mech-shared