DatasetRepositoryEnum

Description

Public repository hosting the dataset. Superset of CommunityMech's enum (all values preserved) plus common additions; CultureMech datasets have no repository field today and migrate with repository unset / OTHER.

From schema

https://w3id.org/kg-microbe/mech-shared

Permissible values

Ncbi sra

Text: NCBI_SRA
Description: NCBI Sequence Read Archive.

Ncbi bioproject

Text: NCBI_BIOPROJECT
Description: NCBI BioProject.

Ncbi geo

Text: NCBI_GEO
Description: NCBI Gene Expression Omnibus.

Ncbi assembly

Text: NCBI_ASSEMBLY
Description: NCBI Assembly (genome assemblies).

Ena

Text: ENA
Description: European Nucleotide Archive.

Arrayexpress

Text: ARRAYEXPRESS
Description: EBI ArrayExpress / BioStudies.

Mgnify

Text: MGNIFY
Description: EBI MGnify metagenomics resource.

Jgi gold

Text: JGI_GOLD
Description: JGI Genomes OnLine Database.

Jgi img

Text: JGI_IMG
Description: JGI Integrated Microbial Genomes & Microbiomes.

Nmdc

Text: NMDC
Description: National Microbiome Data Collaborative.

Metabolomics workbench

Text: METABOLOMICS_WORKBENCH
Description: NIH Metabolomics Workbench.

Metabolights

Text: METABOLIGHTS
Description: EBI MetaboLights metabolomics repository.

Massive

Text: MASSIVE
Description: MassIVE mass-spectrometry repository.

Gnps

Text: GNPS
Description: Global Natural Products Social Molecular Networking.

Pride

Text: PRIDE
Description: EBI PRIDE proteomics repository.

Dbgap

Text: DBGAP
Description: NCBI database of Genotypes and Phenotypes.

Gtex

Text: GTEX
Description: Genotype-Tissue Expression project.

Figshare

Text: FIGSHARE
Description: Figshare general-purpose research data archive.

Zenodo

Text: ZENODO
Description: Zenodo general-purpose research data archive.

Biomodels

Text: BIOMODELS
Description: EBI BioModels repository of computational models.

Kbase

Text: KBASE
Description: DOE Systems Biology Knowledgebase (KBase).

Other

Text: OTHER
Description: A repository not covered by the above.