DatasetTypeEnum

Name

DatasetTypeEnum

Description

Type of dataset or data resource. Canonical UNION of CultureMech's and CommunityMech's enums plus microbial additions. Migration map (old → this): CultureMech values carry over unchanged; CommunityMech GENOME→GENOMICS, METAGENOME→METAGENOMICS, METATRANSCRIPTOME→METATRANSCRIPTOMICS, METAPROTEOME→METAPROTEOMICS (AMPLICON_16S / AMPLICON_ITS / METABOLOMICS / PHENOTYPE / MULTI_OMICS / OTHER are unchanged).

From schema

https://w3id.org/kg-microbe/mech-shared

Permissible values

Genomics

Text

GENOMICS

Description

Isolate / single-organism genome data. (CultureMech GENOMICS; CommunityMech GENOME)

Metagenomics

Text

METAGENOMICS

Description

Shotgun metagenome sequencing. (CommunityMech METAGENOME)

Amplicon 16s

Text

AMPLICON_16S

Description

16S rRNA marker-gene amplicon sequencing.

Amplicon its

Text

AMPLICON_ITS

Description

ITS marker-gene amplicon sequencing.

Amplicon other

Text

AMPLICON_OTHER

Description

Marker-gene amplicon sequencing other than 16S/ITS (e.g. 18S, rpoB).

Transcriptomics

Text

TRANSCRIPTOMICS

Description

Single-organism RNA sequencing / expression.

Metatranscriptomics

Text

METATRANSCRIPTOMICS

Description

Community-level RNA sequencing. (CommunityMech METATRANSCRIPTOME)

Proteomics

Text

PROTEOMICS

Description

Single-organism protein expression profiling.

Metaproteomics

Text

METAPROTEOMICS

Description

Community-level proteomics. (CommunityMech METAPROTEOME)

Metabolomics

Text

METABOLOMICS

Description

Metabolite profiling.

Fluxomics

Text

FLUXOMICS

Description

Metabolic flux profiling.

Phenomics

Text

PHENOMICS

Description

High-throughput phenotype profiling.

Phenotype

Text

PHENOTYPE

Description

Phenotype / trait measurement collection (e.g. growth, biochemical).

Multi omics

Text

MULTI_OMICS

Description

Integrated multi-omics profiling.

Other

Text

OTHER

Description

A dataset type not covered by the above.