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biotin

CHEBI:15956 EXACT SEEDED antiviralenzyme inhibitor

What these status tags mean

Curation status describes a workflow state. SEEDED means the record entered through the source-seeding workflow; it does not imply that no later curation occurred. PROPOSED marks an addition awaiting review; REVIEWED records curator sign-off on identity, structure, filing class and producer claims; DEPRECATED retains a superseded or out-of-scope record. These are workflow decisions, not independently verified human review. Agent-assisted contributions may appear in the record history.

Grounding describes the identifier mapping: EXACT uses an ontology identity asserted by the source; MINTED keeps a local identifier when no defensible ontology identity is available; REVIEW_NEEDED flags an exact structure whose ontology identity needs adjudication. The grounding note retains any unresolved alternatives. These tags do not establish the strength of producer or activity evidence.

An organic heterobicyclic compound that consists of 2-oxohexahydro-1H-thieno[3,4-d]imidazole having a valeric acid substituent attached to the tetrahydrothiophene ring. The parent of the class of biotins.

Structure

Standard InChIKeyYBJHBAHKTGYVGT-ZKWXMUAHSA-N
SMILESOC(=O)CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12
Stereochemistryfully defined
Cross-referencesnpatlas:NPA013155, pubchem:171548

Filing pathway

Alkaloids — computed by NPClassifier npclassifier.gnps2.org@2026-09-07, which is why it is pinned rather than recomputed. The gene cluster's asserted class is other, from MIBiG.

Producer organisms 2

A claim that this taxon makes the compound. The basis says what the evidence addressed — a knockout and a database assertion are not the same claim.

TaxonBasisClusterEvidence
Aspergillus nidulans
NCBITaxon:162425
SOURCE_ASSERTION mibig:BGC0001238 PMID:20713166
Aspergillus nidulans
NCBITaxon:162425
SOURCE_ASSERTION mibig:BGC0001239 PMID:20713166

Occurrences 23

Somebody found the compound in this organism and cited it. That is not a claim that the organism makes it, and nothing here promotes one to the other.

TaxonSourceReference
Mus musculus
NCBITaxon:10090
CHEBI PMID:19425150
Lysinibacillus sphaericus
NCBITaxon:1421
LOTUS DOI:10.1271/BBB1961.49.2783
Achromobacter
NCBITaxon:222
LOTUS DOI:10.1016/0006-291X(81)90262-X
Lipomyces starkeyi
NCBITaxon:29829
LOTUS DOI:10.2323/JGAM.20.277
Glycine max
NCBITaxon:3847
LOTUS DOI:10.1080/09540100903203004
Phaseolus vulgaris
NCBITaxon:3885
LOTUS DOI:10.3390/IJMS19041049
Phaseolus vulgaris
NCBITaxon:3885
LOTUS DOI:10.3390/METABO4030599
Phycomyces blakesleeanus
NCBITaxon:4837
LOTUS DOI:10.1016/0031-9422(96)00146-X
Escherichia coli
NCBITaxon:562
LOTUS DOI:10.1021/JA00085A061
Escherichia coli
NCBITaxon:562
LOTUS DOI:10.1038/MSB.2011.65
Escherichia coli
NCBITaxon:562
LOTUS DOI:10.1073/PNAS.69.8.2219
Escherichia coli
NCBITaxon:562
CHEBI PMID:21988831
Caenorhabditis elegans
NCBITaxon:6239
LOTUS DOI:10.3389/FMOLB.2018.00096
Artemia salina
NCBITaxon:85549
LOTUS DOI:10.1021/JF60200A008
Homo sapiens
NCBITaxon:9606
LOTUS DOI:10.1007/S11306-012-0464-Y
Homo sapiens
NCBITaxon:9606
LOTUS DOI:10.1007/S11306-016-1051-4
Homo sapiens
NCBITaxon:9606
LOTUS DOI:10.1038/NBT.2488
Homo sapiens
NCBITaxon:9606
LOTUS DOI:10.1111/J.1600-0404.1999.TB07369.X
Homo sapiens
NCBITaxon:9606
CHEBI Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Homo sapiens
NCBITaxon:9606
CHEBI MTBLS87
Homo sapiens
NCBITaxon:9606
CHEBI PMID:10577274
Homo sapiens
NCBITaxon:9606
CHEBI Sugimoto et al. (2013) Physiological and environmental parameters associated with mass spectrometry-based salivary metabolomic profiles.
Aspergillus nidulans
NCBITaxon:162425
LOTUS DOI:10.1016/J.FGB.2010.08.004

Biosynthetic gene clusters 2

AccessionHostLocus evidenceGenome
mibig:BGC0001238 Aspergillus nidulans
NCBITaxon:162425
CLUSTER_UNSTATED genbank:FJ430072.1
mibig:BGC0001239 Aspergillus nidulans
NCBITaxon:162425
CLUSTER_UNSTATED genbank:FJ430073.1

A locus claim and a taxon claim are different questions. Heterologous expression settles the first and leaves the second where the isolation report left it.

Mechanism & Biosynthesis Overview

PRODUCERS & OCCURRENCE 2 producers (0 causal) 23 cited occurrences BIOSYNTHETIC LOCUS 2 gene clusters 0 curated pathway steps NATURAL PRODUCT biotin CHEBI:15956 Alkaloids TARGETS & BIOACTIVITY 0 molecular targets 25 bioactivities · 1 graph

Causal graph — bioactivity 3 nodes, 2 edges

Biotin binds the Streptomyces avidinii streptavidin and chicken avidin subunits captured in homotetrameric biotin complexes.

SubjectPredicateObjectNotesEvidence
biotin binds Streptomyces avidinii streptavidin PubChem BioAssay AID 977611 maps this exact Standard InChIKey to an active 40 fM Kd row for PDB 1STP chain A; PDBe maps 1STP_A to Streptomyces avidinii UniProtKB:P22629, and RCSB reports BTN biotin as the 1STP non-polymer ligand.
DOI:10.1126/science.2911722
DOI:10.2210/pdb1stp/pdb
  • reference
    DOI:10.1126/science.2911722
    evidence type
    PRIMARY_EXPERIMENT
    snippet
    Structural origins of high-affinity biotin binding to streptavidin.
    notes
    Weber et al. solved PDB 1STP as a biotin-bound Streptomyces avidinii streptavidin structure.
  • reference
    DOI:10.2210/pdb1stp/pdb
    evidence type
    DATABASE_ASSERTION
    notes
    RCSB PDB identifies 1STP as a biotin-streptavidin crystal structure and PDBe maps chain A to the mature Streptomyces avidinii streptavidin sequence in UniProtKB:P22629.
biotin binds chicken avidin PubChem BioAssay AID 977611 maps this exact Standard InChIKey to an active 1 fM Kd row for PDB 1AVD chain A; PDBe maps 1AVD_A to Gallus gallus UniProtKB:P02701, and RCSB reports BTN biotin as the 1AVD entity 3 ligand.
DOI:10.1006/jmbi.1993.1321
DOI:10.2210/pdb1avd/pdb
  • reference
    DOI:10.1006/jmbi.1993.1321
    evidence type
    PRIMARY_EXPERIMENT
    snippet
    egg-white avidin in its functional complex with biotin
    notes
    Pugliese et al. solved PDB 1AVD as a biotin-bound chicken egg-white avidin structure.
  • reference
    DOI:10.2210/pdb1avd/pdb
    evidence type
    DATABASE_ASSERTION
    notes
    RCSB PDB identifies 1AVD as a chicken avidin crystal structure with BTN biotin ligands, and PDBe maps chain A to the mature Gallus gallus avidin sequence in UniProtKB:P02701.

Every edge carries its own citation; an uncited edge is refused by the corpus tests.

Bioactivities 25

Entries preserve source qualifiers, targets and evidence. Repeated assay names or values are not independent replications; inspect source detail for differences.

AssayResultTarget enzymeSource detail
Counterscreen for IDE activators: Fluorescence polarization-based biochemical high throughput dose response assay for activators of recombinant IDEEC50 2.526 uM; ACTIVENot recorded
pubchem.aid:588681
assay
Counterscreen for IDE activators: Fluorescence polarization-based biochemical high throughput dose response assay for activators of recombinant IDE
evidence
  • reference
    pubchem.aid:588681
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 588681, deposited by The Scripps Research Institute Molecular Screening Center; assay type Confirmatory. Target accession NP_004960 was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
EC50
value
2.526
units
uM
Counterscreen for IDE activators: Fluorescence polarization-based biochemical high throughput dose response assay to identify fluorescent artifacts and/or optically active compoundsEC50 2.057 uM; ACTIVENot recorded
pubchem.aid:588442
assay
Counterscreen for IDE activators: Fluorescence polarization-based biochemical high throughput dose response assay to identify fluorescent artifacts and/or optically active compounds
evidence
  • reference
    pubchem.aid:588442
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 588442, deposited by The Scripps Research Institute Molecular Screening Center; assay type Confirmatory.
call
ACTIVE
measurement type
EC50
value
2.057
units
uM
Counterscreen for activators of insulin-degrading enzyme (IDE): fluorescence-based cell-based high throughput dose response LDH release assay to identify compounds that are cytotoxic to HEK cells or compromise cell membrane permeabilityIC50 89.251 uM; INACTIVENot recorded
pubchem.aid:588440
assay
Counterscreen for activators of insulin-degrading enzyme (IDE): fluorescence-based cell-based high throughput dose response LDH release assay to identify compounds that are cytotoxic to HEK cells or compromise cell membrane permeability
evidence
  • reference
    pubchem.aid:588440
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 588440, deposited by The Scripps Research Institute Molecular Screening Center; assay type Confirmatory.
call
INACTIVE
measurement type
IC50
value
89.251
units
uM
Counterscreen for inhibitors of the interaction of the Ras and Rab interactor 1 protein (Rin1) and the c-abl oncogene 1, non-receptor tyrosine kinase (Abl): Fluorescence-based biochemical high throughput dose response assay to identify GFP inhibitors and fluorescence quenchersIC50 67.588 uM; INACTIVENot recorded
pubchem.aid:602182
assay
Counterscreen for inhibitors of the interaction of the Ras and Rab interactor 1 protein (Rin1) and the c-abl oncogene 1, non-receptor tyrosine kinase (Abl): Fluorescence-based biochemical high throughput dose response assay to identify GFP inhibitors and fluorescence quenchers
evidence
  • reference
    pubchem.aid:602182
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 602182, deposited by The Scripps Research Institute Molecular Screening Center; assay type Confirmatory. Target accession CAA58789 was left ungrounded because PubChem did not provide a UniProtKB accession.
call
INACTIVE
measurement type
IC50
value
67.588
units
uM
Cytochrome P450 Family 2 Subfamily C Member 19 (CYP2C19) small molecule antagonists: luciferase reporter qHTS assayOTHER 0.1096 uM; INACTIVENot recorded
pubchem.aid:1671197
assay
Cytochrome P450 Family 2 Subfamily C Member 19 (CYP2C19) small molecule antagonists: luciferase reporter qHTS assay
evidence
  • reference
    pubchem.aid:1671197
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 1671197, deposited by 824; assay type Confirmatory. Source endpoint: Potency.
call
INACTIVE
measurement type
OTHER
value
0.1096
units
uM
Cytochrome P450 Family 2 Subfamily C Member 19 (CYP2C19) small molecule antagonists: luciferase reporter qHTS assayOTHER 0.1096 uM; INACTIVENot recorded
pubchem.aid:1671197
assay
Cytochrome P450 Family 2 Subfamily C Member 19 (CYP2C19) small molecule antagonists: luciferase reporter qHTS assay
evidence
  • reference
    pubchem.aid:1671197
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 1671197, deposited by 824; assay type Confirmatory. Source endpoint: Potency. Target accession AAV41877 was left ungrounded because PubChem did not provide a UniProtKB accession.
call
INACTIVE
measurement type
OTHER
value
0.1096
units
uM
Cytochrome P450 Family 2 Subfamily D Member 6 (CYP2D6) small molecule antagonists: luciferase reporter qHTS assayOTHER 43.6486 uM; NOT_DETERMINEDNot recorded
pubchem.aid:1671196
assay
Cytochrome P450 Family 2 Subfamily D Member 6 (CYP2D6) small molecule antagonists: luciferase reporter qHTS assay
evidence
  • reference
    pubchem.aid:1671196
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 1671196, deposited by 824; assay type Confirmatory. Source outcome: Inconclusive. Source endpoint: Potency.
call
NOT_DETERMINED
measurement type
OTHER
value
43.6486
units
uM
Cytochrome P450 Family 2 Subfamily D Member 6 (CYP2D6) small molecule antagonists: luciferase reporter qHTS assayOTHER 43.6486 uM; NOT_DETERMINEDNot recorded
pubchem.aid:1671196
assay
Cytochrome P450 Family 2 Subfamily D Member 6 (CYP2D6) small molecule antagonists: luciferase reporter qHTS assay
evidence
  • reference
    pubchem.aid:1671196
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 1671196, deposited by 824; assay type Confirmatory. Source outcome: Inconclusive. Source endpoint: Potency. Target accession ANW61984 was left ungrounded because PubChem did not provide a UniProtKB accession.
call
NOT_DETERMINED
measurement type
OTHER
value
43.6486
units
uM
Cytochrome P450 family 3 subfamily A member 7 (CYP3A7) small molecule antagonists: luciferase cell-based qHTS assayOTHER 21.8761 uM; NOT_DETERMINEDNot recorded
pubchem.aid:1963596
assay
Cytochrome P450 family 3 subfamily A member 7 (CYP3A7) small molecule antagonists: luciferase cell-based qHTS assay
evidence
  • reference
    pubchem.aid:1963596
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 1963596, deposited by NCGC; assay type Confirmatory. Source outcome: Inconclusive. Source endpoint: Potency.
call
NOT_DETERMINED
measurement type
OTHER
value
21.8761
units
uM
Cytochrome P450 family 3 subfamily A member 7 (CYP3A7) small molecule antagonists: luciferase cell-based qHTS assayOTHER 21.8761 uM; NOT_DETERMINEDNot recorded
pubchem.aid:1963596
assay
Cytochrome P450 family 3 subfamily A member 7 (CYP3A7) small molecule antagonists: luciferase cell-based qHTS assay
evidence
  • reference
    pubchem.aid:1963596
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 1963596, deposited by NCGC; assay type Confirmatory. Source outcome: Inconclusive. Source endpoint: Potency. Target accession NP_000756 was left ungrounded because PubChem did not provide a UniProtKB accession.
call
NOT_DETERMINED
measurement type
OTHER
value
21.8761
units
uM
Discovery of Small Molecule Probes for H1N1 Influenza NS1AIC50 0.2 uM; ACTIVENot recorded
pubchem.aid:504329
assay
Discovery of Small Molecule Probes for H1N1 Influenza NS1A
evidence
  • reference
    pubchem.aid:504329
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 504329, deposited by Southern Research Specialized Biocontainment Screening Center; assay type Confirmatory. Target accession ACP44172 was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
IC50
value
0.2
units
uM
activity class
ANTIVIRAL
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDBKD 1e-09 uM; ACTIVENot recorded
PMID:8515446
assay
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB
evidence
  • reference
    PMID:8515446
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 977611, deposited by Shanghai Institute of Organic Chemistry; assay type Other. Target accession 1AVD_A was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
KD
value
1e-09
units
uM
activity class
ENZYME_INHIBITOR
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDBKD 0.0002 uM; ACTIVENot recorded
PMID:10850797
assay
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB
evidence
  • reference
    PMID:10850797
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 977611, deposited by Shanghai Institute of Organic Chemistry; assay type Other. Target accession 1DF8_A was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
KD
value
0.0002
units
uM
activity class
ENZYME_INHIBITOR
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDBKD 0.0002 uM; ACTIVENot recorded
PMID:10850797
assay
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB
evidence
  • reference
    PMID:10850797
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 977611, deposited by Shanghai Institute of Organic Chemistry; assay type Other. Target accession 1DF8_B was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
KD
value
0.0002
units
uM
activity class
ENZYME_INHIBITOR
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDBKD 2.8e-05 uM; ACTIVENot recorded
PMID:12925786
assay
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB
evidence
  • reference
    PMID:12925786
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 977611, deposited by Shanghai Institute of Organic Chemistry; assay type Other. Target accession 1N43_A was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
KD
value
2.8e-05
units
uM
activity class
ENZYME_INHIBITOR
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDBKD 2.8e-05 uM; ACTIVENot recorded
PMID:12925786
assay
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB
evidence
  • reference
    PMID:12925786
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 977611, deposited by Shanghai Institute of Organic Chemistry; assay type Other. Target accession 1N43_D was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
KD
value
2.8e-05
units
uM
activity class
ENZYME_INHIBITOR
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDBKD 1.1e-05 uM; ACTIVENot recorded
PMID:12925786
assay
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB
evidence
  • reference
    PMID:12925786
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 977611, deposited by Shanghai Institute of Organic Chemistry; assay type Other. Target accession 1N9M_A was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
KD
value
1.1e-05
units
uM
activity class
ENZYME_INHIBITOR
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDBKD 1.1e-05 uM; ACTIVENot recorded
PMID:12925786
assay
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB
evidence
  • reference
    PMID:12925786
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 977611, deposited by Shanghai Institute of Organic Chemistry; assay type Other. Target accession 1N9M_D was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
KD
value
1.1e-05
units
uM
activity class
ENZYME_INHIBITOR
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDBKD 6.9e-07 uM; ACTIVENot recorded
PMID:12925786
assay
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB
evidence
  • reference
    PMID:12925786
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 977611, deposited by Shanghai Institute of Organic Chemistry; assay type Other. Target accession 1NDJ_A was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
KD
value
6.9e-07
units
uM
activity class
ENZYME_INHIBITOR
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDBKD 6.9e-07 uM; ACTIVENot recorded
PMID:12925786
assay
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB
evidence
  • reference
    PMID:12925786
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 977611, deposited by Shanghai Institute of Organic Chemistry; assay type Other. Target accession 1NDJ_D was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
KD
value
6.9e-07
units
uM
activity class
ENZYME_INHIBITOR
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDBKD 4e-08 uM; ACTIVENot recorded
PMID:2911722
assay
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB
evidence
  • reference
    PMID:2911722
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 977611, deposited by Shanghai Institute of Organic Chemistry; assay type Other. Target accession 1STP_A was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
KD
value
4e-08
units
uM
activity class
ENZYME_INHIBITOR
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDBKD 0.0439 uM; ACTIVENot recorded
PMID:9568892
assay
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB
evidence
  • reference
    PMID:9568892
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 977611, deposited by Shanghai Institute of Organic Chemistry; assay type Other. Target accession 1SWG_D was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
KD
value
0.0439
units
uM
activity class
ENZYME_INHIBITOR
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDBKD 1e-06 uM; ACTIVENot recorded
PMID:9636711
assay
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB
evidence
  • reference
    PMID:9636711
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 977611, deposited by Shanghai Institute of Organic Chemistry; assay type Other. Target accession 1SWK_A was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
KD
value
1e-06
units
uM
activity class
ENZYME_INHIBITOR
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDBKD 1e-06 uM; ACTIVENot recorded
PMID:9636711
assay
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB
evidence
  • reference
    PMID:9636711
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 977611, deposited by Shanghai Institute of Organic Chemistry; assay type Other. Target accession 1SWK_D was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
KD
value
1e-06
units
uM
activity class
ENZYME_INHIBITOR
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDBKD 1e-06 uM; ACTIVENot recorded
PMID:9636711
assay
Experimentally measured binding affinity data (Kd) for protein-ligand complexes derived from PDB
evidence
  • reference
    PMID:9636711
    evidence type
    DATABASE_ASSERTION
    notes
    PubChem BioAssay AID 977611, deposited by Shanghai Institute of Organic Chemistry; assay type Other. Target accession 1SWN_A was left ungrounded because PubChem did not provide a UniProtKB accession.
call
ACTIVE
measurement type
KD
value
1e-06
units
uM
activity class
ENZYME_INHIBITOR
notes
78 further PubChem assay results are in data/raw/pubchem_bioassay.tsv but not written here.

Explore across X-Mech

Open questions 1

shared-structure — This structure is reported by more than one MIBiG entry: BGC0001238, BGC0001239. Confirm they describe the same compound rather than an upstream cross-reference error.

Provenance

Source conceptSourceVersion
BGC0001238MIBIG3
BGC0001239MIBIG3
CHEBI:15956CHEBI3-star

This page is generated from data/natural_products/alkaloids/biotin.yaml, which is generated from the committed inventories. Neither is edited by hand.