{
 "format": "pathwaymech-pathway-index/1",
 "source": "https://github.com/CultureBotAI/PathwayMech",
 "records": [
  {
   "id": "GO:0010139",
   "label": "pyrimidine deoxyribonucleotide salvage",
   "pathway_type": "pyrimidine-deoxyribonucleotide-salvage",
   "page": "records/GO_0010139.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/GO_0010139.html",
   "taxa": [
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0ABF6",
     "label": "Cytidine deaminase"
    },
    {
     "id": "UniProtKB:P07650",
     "label": "Thymidine phosphorylase"
    },
    {
     "id": "UniProtKB:P23331",
     "label": "Thymidine kinase"
    }
   ],
   "reactions": [
    "RHEA:13434",
    "RHEA:22825",
    "RHEA:16039",
    "RHEA:28207",
    "RHEA:19130"
   ]
  },
  {
   "id": "GO:0019270",
   "label": "aerobactin biosynthetic process",
   "pathway_type": "aerobactin-biosynthesis",
   "page": "records/GO_0019270.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/GO_0019270.html",
   "taxa": [
    {
     "id": "NCBITaxon:1267897",
     "label": "Klebsiella pneumoniae hvKP1"
    }
   ],
   "proteins": [
    {
     "id": "NCBIProtein:EMB09144.1",
     "label": "hypothetical protein G057_19877 [Klebsiella pneumoniae hvKP1]"
    },
    {
     "id": "NCBIProtein:EMB09145.1",
     "label": "IucB [Klebsiella pneumoniae hvKP1]"
    },
    {
     "id": "NCBIProtein:EMB09146.1",
     "label": "IucC [Klebsiella pneumoniae hvKP1]"
    },
    {
     "id": "NCBIProtein:EMB09147.1",
     "label": "IucD [Klebsiella pneumoniae hvKP1]"
    }
   ],
   "reactions": [
    "RHEA:23229",
    "RHEA:22389",
    "RHEA:32164",
    "RHEA:32168"
   ]
  },
  {
   "id": "GO:0019305",
   "label": "dTDP-rhamnose biosynthetic process",
   "pathway_type": "dtdp-l-rhamnose-biosynthesis",
   "page": "records/GO_0019305.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/GO_0019305.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P37744",
     "label": "Glucose-1-phosphate thymidylyltransferase 1"
    },
    {
     "id": "UniProtKB:P37759",
     "label": "dTDP-glucose 4,6-dehydratase 1"
    },
    {
     "id": "UniProtKB:P37745",
     "label": "dTDP-4-dehydrorhamnose 3,5-epimerase"
    },
    {
     "id": "UniProtKB:P37760",
     "label": "dTDP-4-dehydrorhamnose reductase"
    }
   ],
   "reactions": [
    "RHEA:15226",
    "RHEA:17222",
    "RHEA:16970",
    "RHEA:21798"
   ]
  },
  {
   "id": "GO:0019618",
   "label": "protocatechuate catabolic process, ortho-cleavage",
   "pathway_type": "aromatic-compound-catabolism",
   "page": "records/GO_0019618.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/GO_0019618.html",
   "taxa": [
    {
     "id": "NCBITaxon:303",
     "label": "Pseudomonas putida"
    }
   ],
   "proteins": [],
   "reactions": [
    "RHEA:10085",
    "MetaCyc:5.5.1.2-RXN",
    "RHEA:23349",
    "RHEA:10185",
    "MetaCyc:PWY-2361"
   ]
  },
  {
   "id": "GO:0036040",
   "label": "curcumin catabolic process",
   "pathway_type": "curcumin-degradation",
   "page": "records/GO_0036040.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/GO_0036040.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P76113",
     "label": "NADPH-dependent curcumin reductase"
    }
   ],
   "reactions": [
    "RHEA:34821",
    "RHEA:34813"
   ]
  },
  {
   "id": "GO:0042864",
   "label": "pyochelin biosynthetic process",
   "pathway_type": "pyochelin-biosynthesis",
   "page": "records/GO_0042864.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/GO_0042864.html",
   "taxa": [
    {
     "id": "NCBITaxon:208964",
     "label": "Pseudomonas aeruginosa PAO1"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q9HWG3",
     "label": "Pyochelin synthase PchD"
    },
    {
     "id": "UniProtKB:G3XCV2",
     "label": "Pyochelin synthetase PchE"
    },
    {
     "id": "UniProtKB:Q9HWG4",
     "label": "Pyochelin synthetase PchF"
    },
    {
     "id": "UniProtKB:Q9HWG5",
     "label": "Pyochelin biosynthetic protein PchG"
    }
   ],
   "reactions": [
    "MetaCyc:RXN-11113",
    "MetaCyc:RXN-11115",
    "MetaCyc:RXN-11117",
    "MetaCyc:RXN-11118",
    "MetaCyc:RXN-11120",
    "MetaCyc:RXN-11121",
    "MetaCyc:RXN-11122",
    "MetaCyc:RXN-11123",
    "MetaCyc:RXN-11125",
    "MetaCyc:RXN-19466",
    "MetaCyc:RXN-19469"
   ]
  },
  {
   "id": "GO:0043427",
   "label": "carbon fixation by 3-hydroxypropionate cycle",
   "pathway_type": "carbon-fixation",
   "page": "records/GO_0043427.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/GO_0043427.html",
   "taxa": [
    {
     "id": "NCBITaxon:1108",
     "label": "Chloroflexus aurantiacus"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:A9W9X0",
     "label": "biotin carboxylase"
    },
    {
     "id": "UniProtKB:A9WBQ8",
     "label": "Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha"
    },
    {
     "id": "UniProtKB:A9WBQ9",
     "label": "Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta"
    },
    {
     "id": "UniProtKB:A9WDT7",
     "label": "succinate dehydrogenase"
    },
    {
     "id": "UniProtKB:Q6QQP7",
     "label": "Malonyl-CoA reductase"
    },
    {
     "id": "UniProtKB:S5N020",
     "label": "Malyl-CoA/beta-methylmalyl-CoA/citramalyl-CoA lyase"
    },
    {
     "id": "UniProtKB:Q1KLK1",
     "label": "Succinyl-CoA--L-malate CoA-transferase alpha subunit"
    },
    {
     "id": "UniProtKB:Q1KLK0",
     "label": "Succinyl-CoA--L-malate CoA-transferase beta subunit"
    },
    {
     "id": "UniProtKB:Q8VRG6",
     "label": "acetate--CoA ligase"
    }
   ],
   "reactions": [
    "RHEA:10750",
    "RHEA:13502",
    "RHEA:54729",
    "RHEA:26448",
    "RHEA:26440",
    "RHEA:26535",
    "RHEA:26519",
    "RHEA:26456",
    "RHEA:23721",
    "RHEA:20555",
    "RHEA:22889",
    "RHEA:38256",
    "RHEA:40524",
    "RHEA:12462",
    "RHEA:16630"
   ]
  },
  {
   "id": "GO:0097288",
   "label": "7-cyano-7-deazaguanine biosynthetic process",
   "pathway_type": "deazapurine-biosynthesis",
   "page": "records/GO_0097288.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/GO_0097288.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0A6T5",
     "label": "GTP cyclohydrolase 1"
    },
    {
     "id": "UniProtKB:P65870",
     "label": "6-carboxy-5,6,7,8-tetrahydropterin synthase"
    },
    {
     "id": "UniProtKB:P64554",
     "label": "7-carboxy-7-deazaguanine synthase"
    },
    {
     "id": "UniProtKB:P77756",
     "label": "7-cyano-7-deazaguanine synthase"
    }
   ],
   "reactions": [
    "RHEA:17474",
    "RHEA:27967",
    "RHEA:27975",
    "RHEA:27983"
   ]
  },
  {
   "id": "GO:1901281",
   "label": "fructoselysine catabolic process",
   "pathway_type": "glycated-amino-acid-catabolism",
   "page": "records/GO_1901281.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/GO_1901281.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P45543",
     "label": "Fructoselysine 6-kinase"
    },
    {
     "id": "UniProtKB:P0AC00",
     "label": "Fructoselysine 6-phosphate deglycase"
    }
   ],
   "reactions": [
    "RHEA:28379",
    "RHEA:28383"
   ]
  },
  {
   "id": "GO:1902000",
   "label": "homogentisate catabolic process",
   "pathway_type": "homogentisate-degradation",
   "page": "records/GO_1902000.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/GO_1902000.html",
   "taxa": [
    {
     "id": "NCBITaxon:303",
     "label": "Pseudomonas putida"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q6EMI9",
     "label": "Homogentisate 1,2-dioxygenase"
    },
    {
     "id": "UniProtKB:Q6EMI7",
     "label": "Maleylacetoacetate isomerase"
    },
    {
     "id": "UniProtKB:Q6EMI8",
     "label": "fumarylacetoacetase"
    }
   ],
   "reactions": [
    "RHEA:15450",
    "RHEA:14818",
    "RHEA:10245"
   ]
  },
  {
   "id": "KEGG:M00008",
   "label": "Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate",
   "pathway_type": "central-carbon-catabolism",
   "page": "records/KEGG_M00008.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/KEGG_M00008.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0AC53",
     "label": "Glucose-6-phosphate 1-dehydrogenase"
    },
    {
     "id": "UniProtKB:P52697",
     "label": "6-phosphogluconolactonase"
    },
    {
     "id": "UniProtKB:P0ADF6",
     "label": "Phosphogluconate dehydratase"
    },
    {
     "id": "UniProtKB:P0A955",
     "label": "KHG/KDPG aldolase"
    }
   ],
   "reactions": [
    "KEGG:R02736",
    "KEGG:R10907",
    "RHEA:12557",
    "RHEA:17278",
    "RHEA:17090"
   ]
  },
  {
   "id": "KEGG:M00373",
   "label": "Ethylmalonyl pathway",
   "pathway_type": "acetyl-coa-assimilation",
   "page": "records/KEGG_M00373.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/KEGG_M00373.html",
   "taxa": [
    {
     "id": "NCBITaxon:272943",
     "label": "Cereibacter sphaeroides 2.4.1"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q3IZW1",
     "label": "Acetyl-CoA C-acetyltransferase"
    },
    {
     "id": "UniProtKB:Q3IZ91",
     "label": "Crotonyl-CoA carboxylase/reductase"
    },
    {
     "id": "UniProtKB:Q3IZP4",
     "label": "Ethylmalonyl-CoA/methylmalonyl-CoA epimerase"
    },
    {
     "id": "UniProtKB:Q3IZ90",
     "label": "Ethylmalonyl-CoA mutase"
    },
    {
     "id": "UniProtKB:D3JV03",
     "label": "(2S)-methylsuccinyl-CoA dehydrogenase"
    },
    {
     "id": "UniProtKB:Q3IZ78",
     "label": "Mesaconyl-CoA hydratase"
    },
    {
     "id": "UniProtKB:Q3J5L6",
     "label": "L-malyl-CoA/beta-methylmalyl-CoA lyase"
    },
    {
     "id": "UniProtKB:D3JV05",
     "label": "(3S)-malyl-CoA thioesterase"
    },
    {
     "id": "UniProtKB:Q3J4D9",
     "label": "propionyl-CoA carboxylase"
    },
    {
     "id": "UniProtKB:Q3J4E3",
     "label": "Propionyl-CoA carboxylase beta chain"
    },
    {
     "id": "UniProtKB:Q3J4D7",
     "label": "Methylmalonyl-CoA mutase"
    },
    {
     "id": "UniProtKB:Q3J4E6",
     "label": "Propionyl-CoA carboxylase regulator"
    }
   ],
   "reactions": [
    "RHEA:21037",
    "RHEA:45798",
    "RHEA:17850",
    "RHEA:28084",
    "RHEA:59730",
    "RHEA:45577",
    "RHEA:45029",
    "RHEA:38265",
    "RHEA:38260",
    "RHEA:16631",
    "RHEA:38292",
    "RHEA:23721",
    "RHEA:20555",
    "RHEA:22889"
   ]
  },
  {
   "id": "KEGG:M00374",
   "label": "Dicarboxylate-hydroxybutyrate cycle",
   "pathway_type": "autotrophic-carbon-fixation-cycle",
   "page": "records/KEGG_M00374.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/KEGG_M00374.html",
   "taxa": [
    {
     "id": "NCBITaxon:444157",
     "label": "Pyrobaculum neutrophilum V24Sta"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:B1Y8Q3",
     "label": "Phosphoenolpyruvate synthase"
    },
    {
     "id": "UniProtKB:B1YBY2",
     "label": "Phosphoenolpyruvate carboxylase"
    },
    {
     "id": "UniProtKB:B1Y9K4",
     "label": "Malate dehydrogenase"
    },
    {
     "id": "UniProtKB:B1Y931",
     "label": "Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit"
    },
    {
     "id": "UniProtKB:B1Y932",
     "label": "Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit"
    },
    {
     "id": "UniProtKB:B1YBY7",
     "label": "succinate dehydrogenase"
    },
    {
     "id": "UniProtKB:B1YBY8",
     "label": "Ferredoxin"
    },
    {
     "id": "UniProtKB:B1Y9F9",
     "label": "Succinate--CoA ligase [ADP-forming] subunit beta"
    },
    {
     "id": "UniProtKB:B1Y9G0",
     "label": "Succinate--CoA ligase [ADP-forming] subunit alpha"
    },
    {
     "id": "UniProtKB:B1YBY5",
     "label": "Aldehyde Dehydrogenase"
    },
    {
     "id": "UniProtKB:B1YBY3",
     "label": "Alcohol dehydrogenase zinc-binding domain protein"
    },
    {
     "id": "UniProtKB:B1YBY4",
     "label": "AMP-dependent synthetase and ligase"
    },
    {
     "id": "UniProtKB:B1YBY6",
     "label": "Vinylacetyl-CoA Delta-isomerase"
    },
    {
     "id": "UniProtKB:B1YCH1",
     "label": "3-hydroxyacyl-CoA dehydrogenase NAD-binding"
    },
    {
     "id": "UniProtKB:B1YB71",
     "label": "Acetyl-CoA acetyltransferase"
    }
   ],
   "reactions": [
    "KEGG:R01196",
    "RHEA:11365",
    "RHEA:28372",
    "RHEA:21434",
    "RHEA:12461",
    "RHEA:16359",
    "RHEA:17662",
    "RHEA:26452",
    "RHEA:26383",
    "RHEA:23129",
    "RHEA:26531",
    "RHEA:26560",
    "RHEA:30800",
    "RHEA:21038"
   ]
  },
  {
   "id": "MIBiG:BGC0000829",
   "label": "Chromobacterium violaceum violacein biosynthetic gene cluster",
   "pathway_type": "biosynthetic-gene-cluster",
   "page": "records/MIBiG_BGC0000829.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MIBiG_BGC0000829.html",
   "taxa": [
    {
     "id": "NCBITaxon:243365",
     "label": "Chromobacterium violaceum ATCC 12472"
    }
   ],
   "proteins": [
    {
     "id": "NCBIProtein:BAA84782.1",
     "label": "Vio A"
    },
    {
     "id": "NCBIProtein:BAA84783.1",
     "label": "Vio B"
    },
    {
     "id": "NCBIProtein:BAA84784.1",
     "label": "Vio C"
    },
    {
     "id": "NCBIProtein:BAA84785.1",
     "label": "Vio D"
    },
    {
     "id": "NCBIProtein:AAQ60934.1",
     "label": "hypothetical protein"
    }
   ],
   "reactions": []
  },
  {
   "id": "MIBiG:BGC0000852",
   "label": "Sporosarcina pasteurii ectoine biosynthetic gene cluster",
   "pathway_type": "biosynthetic-gene-cluster",
   "page": "records/MIBiG_BGC0000852.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MIBiG_BGC0000852.html",
   "taxa": [
    {
     "id": "NCBITaxon:1474",
     "label": "Sporosarcina pasteurii"
    }
   ],
   "proteins": [
    {
     "id": "NCBIProtein:AAK12083.1",
     "label": "EctA"
    },
    {
     "id": "NCBIProtein:AAK12084.1",
     "label": "EctB"
    },
    {
     "id": "NCBIProtein:AAK12085.1",
     "label": "EctC"
    }
   ],
   "reactions": []
  },
  {
   "id": "MIBiG:BGC0002072",
   "label": "linearmycin A and related metabolites biosynthetic gene cluster",
   "pathway_type": "biosynthetic-gene-cluster",
   "page": "records/MIBiG_BGC0002072.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MIBiG_BGC0002072.html",
   "taxa": [
    {
     "id": "NCBITaxon:465541",
     "label": "Streptomyces sp. Mg1"
    }
   ],
   "proteins": [
    {
     "id": "NCBIProtein:AKL64828.1",
     "label": "LnyI"
    }
   ],
   "reactions": []
  },
  {
   "id": "MetaCyc:2PHENDEG-PWY",
   "label": "phenylethylamine degradation I",
   "pathway_type": "aerobic-aromatic-amine-catabolism",
   "page": "records/MetaCyc_2PHENDEG-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_2PHENDEG-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P46883",
     "label": "Primary amine oxidase"
    },
    {
     "id": "UniProtKB:P80668",
     "label": "Phenylacetaldehyde dehydrogenase"
    },
    {
     "id": "UniProtKB:Q47129",
     "label": "Transcriptional activator FeaR"
    }
   ],
   "reactions": [
    "RHEA:25266",
    "RHEA:21393"
   ]
  },
  {
   "id": "MetaCyc:ACETOACETATE-DEG-PWY",
   "label": "acetoacetate degradation (to acetyl CoA)",
   "pathway_type": "degradation",
   "page": "records/MetaCyc_ACETOACETATE-DEG-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_ACETOACETATE-DEG-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P76458",
     "label": "Acetate CoA-transferase subunit alpha"
    },
    {
     "id": "UniProtKB:P76459",
     "label": "Acetate CoA-transferase subunit beta"
    },
    {
     "id": "UniProtKB:P76461",
     "label": "Acetyl-CoA acetyltransferase"
    },
    {
     "id": "UniProtKB:P37766",
     "label": "Acetate CoA-transferase YdiF"
    },
    {
     "id": "UniProtKB:Q06065",
     "label": "Regulatory protein AtoC"
    }
   ],
   "reactions": [
    "MetaCyc:ACETOACETYL-COA-TRANSFER-RXN",
    "MetaCyc:ACETYL-COA-ACETYLTRANSFER-RXN",
    "MetaCyc:RXN-20154",
    "MetaCyc:RXN-20155",
    "RHEA:27807",
    "RHEA:21038"
   ]
  },
  {
   "id": "MetaCyc:ARABCAT-PWY",
   "label": "L-arabinose degradation I",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/MetaCyc_ARABCAT-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_ARABCAT-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:5.3.1.4",
     "label": "L-arabinose isomerase"
    },
    {
     "id": "EC:2.7.1.16",
     "label": "ribulokinase"
    },
    {
     "id": "EC:5.1.3.4",
     "label": "L-ribulose-5-phosphate 4-epimerase"
    },
    {
     "id": "UniProtKB:P08202",
     "label": "L-arabinose isomerase"
    },
    {
     "id": "UniProtKB:P08203",
     "label": "L-ribulose-5-phosphate 4-epimerase AraD"
    },
    {
     "id": "UniProtKB:P08204",
     "label": "Ribulokinase"
    },
    {
     "id": "UniProtKB:P37680",
     "label": "L-ribulose-5-phosphate 4-epimerase SgbE"
    },
    {
     "id": "UniProtKB:P39306",
     "label": "L-ribulose-5-phosphate 4-epimerase UlaF"
    }
   ],
   "reactions": [
    "RHEA:22073",
    "RHEA:14822",
    "RHEA:22369"
   ]
  },
  {
   "id": "MetaCyc:ARGDEG-III-PWY",
   "label": "L-arginine degradation IV (arginine decarboxylase/agmatine deiminase pathway)",
   "pathway_type": "amino-acid-degradation",
   "page": "records/MetaCyc_ARGDEG-III-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_ARGDEG-III-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:287",
     "label": "Pseudomonas aeruginosa"
    }
   ],
   "proteins": [
    {
     "id": "EC:4.1.1.19",
     "label": "arginine decarboxylase"
    },
    {
     "id": "EC:3.5.3.12",
     "label": "agmatine deiminase"
    },
    {
     "id": "EC:3.5.1.53",
     "label": "N-carbamoylputrescine amidase"
    },
    {
     "id": "UniProtKB:Q9HUX1",
     "label": "Biosynthetic arginine decarboxylase"
    },
    {
     "id": "UniProtKB:Q9I6J9",
     "label": "Agmatine deiminase"
    }
   ],
   "reactions": [
    "RHEA:17642",
    "RHEA:18038",
    "RHEA:22285"
   ]
  },
  {
   "id": "MetaCyc:ARGDEGRAD-PWY",
   "label": "L-arginine degradation V (arginine deiminase pathway)",
   "pathway_type": "amino-acid-degradation",
   "page": "records/MetaCyc_ARGDEGRAD-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_ARGDEGRAD-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:2242",
     "label": "Halobacterium salinarum"
    }
   ],
   "proteins": [
    {
     "id": "EC:3.5.3.6",
     "label": "arginine deiminase"
    },
    {
     "id": "EC:2.1.3.3",
     "label": "ornithine carbamoyltransferase"
    },
    {
     "id": "EC:2.7.2.2",
     "label": "carbamate kinase"
    },
    {
     "id": "UniProtKB:Q48295",
     "label": "Carbamate kinase"
    },
    {
     "id": "UniProtKB:Q48296",
     "label": "Ornithine carbamoyltransferase, catabolic"
    }
   ],
   "reactions": [
    "RHEA:19598",
    "RHEA:19515",
    "RHEA:30757",
    "RHEA:15650"
   ]
  },
  {
   "id": "MetaCyc:ARGSYN-PWY",
   "label": "L-arginine biosynthesis I (via L-ornithine)",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_ARGSYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_ARGSYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.3.1.1",
     "label": "N-acetylglutamate synthase"
    },
    {
     "id": "EC:2.7.2.8",
     "label": "acetylglutamate kinase"
    },
    {
     "id": "EC:1.2.1.38",
     "label": "N-acetyl-gamma-glutamyl-phosphate reductase"
    },
    {
     "id": "EC:2.6.1.11",
     "label": "acetylornithine aminotransferase"
    },
    {
     "id": "EC:3.5.1.16",
     "label": "acetylornithine deacetylase"
    },
    {
     "id": "EC:2.1.3.3",
     "label": "ornithine carbamoyltransferase"
    },
    {
     "id": "EC:6.3.4.5",
     "label": "argininosuccinate synthase"
    },
    {
     "id": "EC:4.3.2.1",
     "label": "argininosuccinate lyase"
    },
    {
     "id": "EC:6.3.5.5",
     "label": "carbamoyl-phosphate synthase (glutamine-hydrolyzing)"
    },
    {
     "id": "UniProtKB:P00968",
     "label": "Carbamoyl phosphate synthase large chain"
    },
    {
     "id": "UniProtKB:P04391",
     "label": "Ornithine carbamoyltransferase subunit I"
    },
    {
     "id": "UniProtKB:P06960",
     "label": "Ornithine carbamoyltransferase subunit F"
    },
    {
     "id": "UniProtKB:P0A6C5",
     "label": "Amino-acid acetyltransferase"
    },
    {
     "id": "UniProtKB:P0A6C8",
     "label": "Acetylglutamate kinase"
    },
    {
     "id": "UniProtKB:P0A6E4",
     "label": "Argininosuccinate synthase"
    },
    {
     "id": "UniProtKB:P0A6F1",
     "label": "Carbamoyl phosphate synthase small chain"
    },
    {
     "id": "UniProtKB:P11446",
     "label": "N-acetyl-gamma-glutamyl-phosphate reductase"
    },
    {
     "id": "UniProtKB:P11447",
     "label": "Argininosuccinate lyase"
    },
    {
     "id": "UniProtKB:P18335",
     "label": "Acetylornithine/succinyldiaminopimelate aminotransferase"
    },
    {
     "id": "UniProtKB:P23908",
     "label": "Acetylornithine deacetylase"
    }
   ],
   "reactions": [
    "RHEA:24293",
    "RHEA:14630",
    "RHEA:21590",
    "RHEA:18051",
    "RHEA:15942",
    "RHEA:19514",
    "RHEA:10933",
    "RHEA:24021",
    "RHEA:18634"
   ]
  },
  {
   "id": "MetaCyc:ARO-PWY",
   "label": "chorismate biosynthesis I",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_ARO-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_ARO-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.5.1.54",
     "label": "3-deoxy-7-phosphoheptulonate synthase"
    },
    {
     "id": "EC:4.2.3.4",
     "label": "3-dehydroquinate synthase"
    },
    {
     "id": "EC:4.2.1.10",
     "label": "3-dehydroquinate dehydratase"
    },
    {
     "id": "EC:1.1.1.25",
     "label": "shikimate dehydrogenase"
    },
    {
     "id": "EC:2.7.1.71",
     "label": "shikimate kinase"
    },
    {
     "id": "EC:2.5.1.19",
     "label": "3-phosphoshikimate 1-carboxyvinyltransferase"
    },
    {
     "id": "EC:4.2.3.5",
     "label": "chorismate synthase"
    },
    {
     "id": "UniProtKB:P00887",
     "label": "Phospho-2-dehydro-3-deoxyheptonate aldolase, Trp-sensitive"
    },
    {
     "id": "UniProtKB:P00888",
     "label": "Phospho-2-dehydro-3-deoxyheptonate aldolase, Tyr-sensitive"
    },
    {
     "id": "UniProtKB:P05194",
     "label": "3-dehydroquinate dehydratase"
    },
    {
     "id": "UniProtKB:P07639",
     "label": "3-dehydroquinate synthase"
    },
    {
     "id": "UniProtKB:P0A6D3",
     "label": "3-phosphoshikimate 1-carboxyvinyltransferase"
    },
    {
     "id": "UniProtKB:P0A6D7",
     "label": "Shikimate kinase 1"
    },
    {
     "id": "UniProtKB:P0A6E1",
     "label": "Shikimate kinase 2"
    },
    {
     "id": "UniProtKB:P0AB91",
     "label": "Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive"
    },
    {
     "id": "UniProtKB:P12008",
     "label": "Chorismate synthase"
    },
    {
     "id": "UniProtKB:P15770",
     "label": "Shikimate dehydrogenase (NADP(+))"
    }
   ],
   "reactions": [
    "RHEA:14718",
    "RHEA:21969",
    "RHEA:21097",
    "RHEA:17739",
    "RHEA:13122",
    "RHEA:21257",
    "RHEA:21021"
   ]
  },
  {
   "id": "MetaCyc:AST-PWY",
   "label": "L-arginine degradation II (AST pathway)",
   "pathway_type": "amino-acid-degradation",
   "page": "records/MetaCyc_AST-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_AST-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:287",
     "label": "Pseudomonas aeruginosa"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.3.1.109",
     "label": "arginine N-succinyltransferase"
    },
    {
     "id": "EC:3.5.3.23",
     "label": "N-succinylarginine dihydrolase"
    },
    {
     "id": "EC:2.6.1.81",
     "label": "succinylornithine transaminase"
    },
    {
     "id": "EC:1.2.1.71",
     "label": "succinylglutamate-semialdehyde dehydrogenase"
    },
    {
     "id": "EC:3.5.1.96",
     "label": "succinylglutamate desuccinylase"
    },
    {
     "id": "UniProtKB:O30508",
     "label": "Succinylornithine transaminase/acetylornithine aminotransferase"
    },
    {
     "id": "UniProtKB:O50174",
     "label": "N-succinylglutamate 5-semialdehyde dehydrogenase"
    },
    {
     "id": "UniProtKB:O50175",
     "label": "N-succinylarginine dihydrolase"
    },
    {
     "id": "UniProtKB:O50177",
     "label": "Succinylglutamate desuccinylase"
    },
    {
     "id": "UniProtKB:P80357",
     "label": "Arginine N-succinyltransferase subunit alpha"
    },
    {
     "id": "UniProtKB:P80358",
     "label": "Arginine N-succinyltransferase subunit beta"
    }
   ],
   "reactions": [
    "RHEA:15186",
    "RHEA:19534",
    "RHEA:16954",
    "RHEA:10813",
    "RHEA:15170"
   ]
  },
  {
   "id": "MetaCyc:BIOTIN-BIOSYNTHESIS-PWY",
   "label": "biotin biosynthesis I",
   "pathway_type": "biotin-biosynthesis",
   "page": "records/MetaCyc_BIOTIN-BIOSYNTHESIS-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_BIOTIN-BIOSYNTHESIS-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    },
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P13001",
     "label": "Pimeloyl-[acyl-carrier protein] methyl ester esterase"
    },
    {
     "id": "UniProtKB:P12998",
     "label": "8-amino-7-oxononanoate synthase"
    },
    {
     "id": "UniProtKB:P12995",
     "label": "Adenosylmethionine-8-amino-7-oxononanoate aminotransferase"
    },
    {
     "id": "UniProtKB:P12996",
     "label": "Biotin synthase"
    },
    {
     "id": "UniProtKB:P12999",
     "label": "Malonyl-[acyl-carrier protein] O-methyltransferase"
    },
    {
     "id": "UniProtKB:P0A953",
     "label": "3-oxoacyl-[acyl-carrier-protein] synthase 1"
    },
    {
     "id": "UniProtKB:P0AEK4",
     "label": "Enoyl-[acyl-carrier-protein] reductase [NADH] FabI"
    },
    {
     "id": "UniProtKB:P0A6Q6",
     "label": "3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ"
    },
    {
     "id": "UniProtKB:P0AEK2",
     "label": "3-oxoacyl-[acyl-carrier-protein] reductase FabG"
    },
    {
     "id": "UniProtKB:P13000",
     "label": "ATP-dependent dethiobiotin synthetase BioD 1"
    }
   ],
   "reactions": [
    "RHEA:17106",
    "MetaCyc:RXN-11474",
    "MetaCyc:RXN-11476",
    "MetaCyc:RXN-11477",
    "MetaCyc:RXN-11478",
    "MetaCyc:RXN-11479",
    "MetaCyc:RXN-11480",
    "MetaCyc:RXN-11481",
    "MetaCyc:RXN-11482",
    "RHEA:42701",
    "RHEA:42289",
    "RHEA:16862",
    "RHEA:15806",
    "RHEA:22061"
   ]
  },
  {
   "id": "MetaCyc:CALVIN-PWY",
   "label": "Calvin-Benson-Bassham cycle",
   "pathway_type": "carbon-fixation",
   "page": "records/MetaCyc_CALVIN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_CALVIN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:1148",
     "label": "Synechocystis sp. PCC 6803"
    },
    {
     "id": "NCBITaxon:1111708",
     "label": "Synechocystis sp. PCC 6803 substr. Kazusa"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P80505",
     "label": "Glyceraldehyde-3-phosphate dehydrogenase 2"
    },
    {
     "id": "UniProtKB:Q55664",
     "label": "Fructose-bisphosphate aldolase class 2"
    },
    {
     "id": "UniProtKB:P74061",
     "label": "Ribulose-phosphate 3-epimerase"
    },
    {
     "id": "UniProtKB:P54205",
     "label": "Ribulose bisphosphate carboxylase large chain"
    },
    {
     "id": "UniProtKB:P73922",
     "label": "D-fructose 1,6-bisphosphatase class 2/sedoheptulose 1,7-bisphosphatase"
    },
    {
     "id": "UniProtKB:P74324",
     "label": "Fructose-1,6-bisphosphatase class 1"
    },
    {
     "id": "UniProtKB:P54206",
     "label": "Ribulose bisphosphate carboxylase small subunit"
    },
    {
     "id": "UniProtKB:Q55766",
     "label": "Ribose-5-phosphate isomerase A"
    },
    {
     "id": "UniProtKB:P74421",
     "label": "Phosphoglycerate kinase"
    },
    {
     "id": "UniProtKB:Q59994",
     "label": "Triosephosphate isomerase"
    },
    {
     "id": "UniProtKB:P74309",
     "label": "Fructose-bisphosphate aldolase class 1"
    },
    {
     "id": "UniProtKB:P37101",
     "label": "Phosphoribulokinase"
    },
    {
     "id": "UniProtKB:P73282",
     "label": "Transketolase"
    },
    {
     "id": "UniProtKB:P73654",
     "label": "Ssl3364 protein"
    }
   ],
   "reactions": [
    "RHEA:14658",
    "RHEA:19366",
    "RHEA:13679",
    "RHEA:17462",
    "RHEA:27628",
    "RHEA:10509",
    "RHEA:11065",
    "RHEA:30168",
    "RHEA:14731",
    "RHEA:18586",
    "RHEA:10298",
    "RHEA:14802",
    "RHEA:23126"
   ]
  },
  {
   "id": "MetaCyc:CATECHOL-ORTHO-CLEAVAGE-PWY",
   "label": "catechol degradation to β-ketoadipate",
   "pathway_type": "aromatic-compound-catabolism",
   "page": "records/MetaCyc_CATECHOL-ORTHO-CLEAVAGE-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_CATECHOL-ORTHO-CLEAVAGE-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:303",
     "label": "Pseudomonas putida"
    }
   ],
   "proteins": [],
   "reactions": [
    "RHEA:23853",
    "RHEA:30033",
    "RHEA:12349",
    "RHEA:10185",
    "MetaCyc:PWY-2361"
   ]
  },
  {
   "id": "MetaCyc:CENTBENZCOA-PWY",
   "label": "benzoyl-CoA degradation II (anaerobic)",
   "pathway_type": "degradation",
   "page": "records/MetaCyc_CENTBENZCOA-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_CENTBENZCOA-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:59405",
     "label": "Thauera aromatica"
    },
    {
     "id": "NCBITaxon:44139",
     "label": "Thauera aromatica K172"
    },
    {
     "id": "NCBITaxon:56780",
     "label": "Syntrophus aciditrophicus SB"
    },
    {
     "id": "NCBITaxon:258594",
     "label": "Rhodopseudomonas palustris CGA009"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:O87876",
     "label": "Benzoyl-CoA reductase subunit A"
    },
    {
     "id": "UniProtKB:O87875",
     "label": "Benzoyl-CoA reductase subunit B"
    },
    {
     "id": "UniProtKB:O87874",
     "label": "Benzoyl-CoA reductase subunit C"
    },
    {
     "id": "UniProtKB:O87877",
     "label": "Benzoyl-CoA reductase subunit D"
    },
    {
     "id": "UniProtKB:O87871",
     "label": "6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase"
    },
    {
     "id": "UniProtKB:O87872",
     "label": "6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase"
    },
    {
     "id": "UniProtKB:O87873",
     "label": "Cyclohexa-1,5-dienecarbonyl-CoA hydratase"
    },
    {
     "id": "UniProtKB:O07460",
     "label": "Benzoyl-CoA reductase subunit"
    },
    {
     "id": "UniProtKB:O07461",
     "label": "Benzoyl-CoA reductase subunit"
    },
    {
     "id": "UniProtKB:O07462",
     "label": "Benzoyl-CoA reductase subunit"
    },
    {
     "id": "UniProtKB:O07463",
     "label": "Benzoyl-CoA reductase subunit"
    },
    {
     "id": "UniProtKB:Q2LXU6",
     "label": "Enoyl-CoA hydratase"
    },
    {
     "id": "UniProtKB:Q2LXU2",
     "label": "6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase"
    },
    {
     "id": "NCBIProtein:WP_011418919.1",
     "label": "6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase [Syntrophus aciditrophicus]"
    }
   ],
   "reactions": [
    "MetaCyc:1.3.99.15-RXN",
    "MetaCyc:4.2.1.100-RXN",
    "MetaCyc:HADTHAUERA-RXN",
    "MetaCyc:RXN-15012",
    "MetaCyc:RXN-15013",
    "MetaCyc:1.1.1.259-RXN",
    "MetaCyc:RXN-8032",
    "MetaCyc:OAHTHAUERA-RXN"
   ]
  },
  {
   "id": "MetaCyc:COA-PWY",
   "label": "coenzyme A biosynthesis I (prokaryotic)",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/MetaCyc_COA-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_COA-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:6.3.2.5",
     "label": "phosphopantothenate--cysteine ligase"
    },
    {
     "id": "EC:4.1.1.36",
     "label": "phosphopantothenoylcysteine decarboxylase"
    },
    {
     "id": "EC:2.7.7.3",
     "label": "pantetheine-phosphate adenylyltransferase"
    },
    {
     "id": "EC:2.7.1.24",
     "label": "dephospho-CoA kinase"
    },
    {
     "id": "UniProtKB:P0A6I6",
     "label": "Phosphopantetheine adenylyltransferase"
    },
    {
     "id": "UniProtKB:P0A6I9",
     "label": "Dephospho-CoA kinase"
    },
    {
     "id": "UniProtKB:P0ABQ0",
     "label": "Coenzyme A biosynthesis bifunctional protein CoaBC"
    }
   ],
   "reactions": [
    "RHEA:19398",
    "RHEA:16794",
    "RHEA:19802",
    "RHEA:18246"
   ]
  },
  {
   "id": "MetaCyc:CYANCAT-PWY",
   "label": "cyanate degradation",
   "pathway_type": "cyanate-catabolism-and-bicarbonate-recycling",
   "page": "records/MetaCyc_CYANCAT-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_CYANCAT-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P00816",
     "label": "Cyanate hydratase"
    },
    {
     "id": "UniProtKB:P0ABE9",
     "label": "Carbonic anhydrase 1"
    }
   ],
   "reactions": [
    "RHEA:18490",
    "RHEA:15650",
    "RHEA:10750"
   ]
  },
  {
   "id": "MetaCyc:CYSTSYN-PWY",
   "label": "L-cysteine biosynthesis I",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_CYSTSYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_CYSTSYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.3.1.30",
     "label": "serine O-acetyltransferase"
    },
    {
     "id": "EC:2.5.1.47",
     "label": "cysteine synthase"
    },
    {
     "id": "UniProtKB:P0A9D4",
     "label": "Serine acetyltransferase"
    },
    {
     "id": "UniProtKB:P0ABK5",
     "label": "Cysteine synthase A"
    },
    {
     "id": "UniProtKB:P16703",
     "label": "Cysteine synthase B"
    }
   ],
   "reactions": [
    "RHEA:24561",
    "RHEA:14830"
   ]
  },
  {
   "id": "MetaCyc:DAPLYSINESYN-PWY",
   "label": "L-lysine biosynthesis I",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_DAPLYSINESYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_DAPLYSINESYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.7.2.4",
     "label": "aspartate kinase"
    },
    {
     "id": "EC:1.2.1.11",
     "label": "aspartate-semialdehyde dehydrogenase"
    },
    {
     "id": "EC:4.3.3.7",
     "label": "4-hydroxy-tetrahydrodipicolinate synthase"
    },
    {
     "id": "EC:1.17.1.8",
     "label": "4-hydroxy-tetrahydrodipicolinate reductase"
    },
    {
     "id": "EC:2.3.1.117",
     "label": "tetrahydrodipicolinate N-succinyltransferase"
    },
    {
     "id": "EC:2.6.1.17",
     "label": "succinyldiaminopimelate transaminase"
    },
    {
     "id": "EC:3.5.1.18",
     "label": "succinyl-diaminopimelate desuccinylase"
    },
    {
     "id": "EC:5.1.1.7",
     "label": "diaminopimelate epimerase"
    },
    {
     "id": "EC:4.1.1.20",
     "label": "diaminopimelate decarboxylase"
    },
    {
     "id": "UniProtKB:P00561",
     "label": "Bifunctional aspartokinase/homoserine dehydrogenase 1"
    },
    {
     "id": "UniProtKB:P00562",
     "label": "Bifunctional aspartokinase/homoserine dehydrogenase 2"
    },
    {
     "id": "UniProtKB:P00861",
     "label": "Diaminopimelate decarboxylase"
    },
    {
     "id": "UniProtKB:P04036",
     "label": "4-hydroxy-tetrahydrodipicolinate reductase"
    },
    {
     "id": "UniProtKB:P08660",
     "label": "Lysine-sensitive aspartokinase 3"
    },
    {
     "id": "UniProtKB:P0A6K1",
     "label": "Diaminopimelate epimerase"
    },
    {
     "id": "UniProtKB:P0A6L2",
     "label": "4-hydroxy-tetrahydrodipicolinate synthase"
    },
    {
     "id": "UniProtKB:P0A9D8",
     "label": "2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase"
    },
    {
     "id": "UniProtKB:P0A9Q9",
     "label": "Aspartate-semialdehyde dehydrogenase"
    },
    {
     "id": "UniProtKB:P0AED7",
     "label": "Succinyl-diaminopimelate desuccinylase"
    },
    {
     "id": "UniProtKB:P18335",
     "label": "Acetylornithine/succinyldiaminopimelate aminotransferase"
    }
   ],
   "reactions": [
    "RHEA:23777",
    "RHEA:24286",
    "RHEA:34172",
    "RHEA:35325",
    "RHEA:35333",
    "RHEA:17326",
    "RHEA:11962",
    "RHEA:22609",
    "RHEA:15394",
    "RHEA:15102"
   ]
  },
  {
   "id": "MetaCyc:DARABCAT-PWY",
   "label": "D-arabinose degradation I",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/MetaCyc_DARABCAT-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_DARABCAT-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:37762",
     "label": "Escherichia coli B"
    }
   ],
   "proteins": [
    {
     "id": "EC:5.3.1.3",
     "label": "D-arabinose isomerase"
    },
    {
     "id": "EC:2.7.1.47",
     "label": "D-ribulokinase"
    }
   ],
   "reactions": [
    "RHEA:17602",
    "RHEA:13850"
   ]
  },
  {
   "id": "MetaCyc:DENITRIFICATION-PWY",
   "label": "nitrate reduction I (denitrification)",
   "pathway_type": "anaerobic-respiration",
   "page": "records/MetaCyc_DENITRIFICATION-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_DENITRIFICATION-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:208964",
     "label": "Pseudomonas aeruginosa PAO1"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:G3XCX1",
     "label": "nitrate reductase (quinone)"
    },
    {
     "id": "UniProtKB:G3XD87",
     "label": "nitrate reductase (quinone)"
    },
    {
     "id": "UniProtKB:G3XD18",
     "label": "nitrate reductase (quinone)"
    },
    {
     "id": "UniProtKB:P24474",
     "label": "Nitrite reductase"
    },
    {
     "id": "UniProtKB:Q59647",
     "label": "Nitric oxide reductase subunit B"
    },
    {
     "id": "UniProtKB:Q59646",
     "label": "Nitric oxide reductase subunit C"
    },
    {
     "id": "UniProtKB:Q9HYL2",
     "label": "Nitrous-oxide reductase"
    },
    {
     "id": "UniProtKB:Q9HXD4",
     "label": "Nitrate/nitrite transporter"
    },
    {
     "id": "UniProtKB:G3XD60",
     "label": "Nitrite extrusion protein 1"
    },
    {
     "id": "UniProtKB:P00099",
     "label": "Cytochrome c-551"
    },
    {
     "id": "UniProtKB:P23926",
     "label": "Transcriptional activator protein anr"
    },
    {
     "id": "UniProtKB:G3XCW6",
     "label": "Transcriptional regulator Dnr"
    },
    {
     "id": "UniProtKB:Q9HXD3",
     "label": "Two-component response regulator NarL"
    }
   ],
   "reactions": [
    "MetaCyc:RXN-11236",
    "MetaCyc:TRANS-RXN0-239",
    "MetaCyc:RXN-15838",
    "MetaCyc:NITRIC-OXIDE-REDUCTASE-RXN",
    "MetaCyc:RXN-12130"
   ]
  },
  {
   "id": "MetaCyc:FUCCAT-PWY",
   "label": "L-fucose degradation I",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/MetaCyc_FUCCAT-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_FUCCAT-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "EC:5.1.3.29",
     "label": "L-fucose mutarotase"
    },
    {
     "id": "EC:5.3.1.25",
     "label": "L-fucose isomerase"
    },
    {
     "id": "EC:2.7.1.51",
     "label": "L-fuculokinase"
    },
    {
     "id": "EC:4.1.2.17",
     "label": "L-fuculose-phosphate aldolase"
    }
   ],
   "reactions": [
    "RHEA:12377",
    "RHEA:12934",
    "RHEA:25582",
    "RHEA:17234"
   ]
  },
  {
   "id": "MetaCyc:GALACTARDEG-PWY",
   "label": "D-galactarate degradation I",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/MetaCyc_GALACTARDEG-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_GALACTARDEG-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    },
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P39829",
     "label": "Galactarate dehydratase (L-threo-forming)"
    },
    {
     "id": "UniProtKB:P23522",
     "label": "5-keto-4-deoxy-D-glucarate aldolase"
    },
    {
     "id": "UniProtKB:P0ABQ2",
     "label": "2-hydroxy-3-oxopropionate reductase"
    },
    {
     "id": "UniProtKB:P23524",
     "label": "Glycerate 2-kinase"
    },
    {
     "id": "UniProtKB:P37047",
     "label": "Carbohydrate diacid regulator"
    },
    {
     "id": "UniProtKB:P0AA80",
     "label": "Probable galactarate/D-glucarate transporter GarP"
    },
    {
     "id": "Entrez:947641",
     "label": "garD"
    },
    {
     "id": "Entrez:947630",
     "label": "garL"
    },
    {
     "id": "Entrez:947631",
     "label": "garR"
    },
    {
     "id": "Entrez:947632",
     "label": "garK"
    },
    {
     "id": "Entrez:944860",
     "label": "cdaR"
    },
    {
     "id": "Entrez:947642",
     "label": "garP"
    }
   ],
   "reactions": [
    "RHEA:16006",
    "MetaCyc:KDGALDOL-RXN",
    "MetaCyc:TSA-REDUCT-RXN",
    "RHEA:27378"
   ]
  },
  {
   "id": "MetaCyc:GALACTCAT-PWY",
   "label": "D-galactonate degradation",
   "pathway_type": "d-galactonate-degradation",
   "page": "records/MetaCyc_GALACTCAT-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_GALACTCAT-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q6BF17",
     "label": "D-galactonate dehydratase"
    },
    {
     "id": "UniProtKB:P31459",
     "label": "2-dehydro-3-deoxygalactonokinase"
    },
    {
     "id": "UniProtKB:Q6BF16",
     "label": "2-dehydro-3-deoxy-6-phosphogalactonate aldolase"
    },
    {
     "id": "UniProtKB:P31460",
     "label": "Galactonate operon transcriptional repressor"
    }
   ],
   "reactions": [
    "RHEA:18650",
    "RHEA:16526",
    "RHEA:24465"
   ]
  },
  {
   "id": "MetaCyc:GALACTUROCAT-PWY",
   "label": "D-galacturonate degradation I",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/MetaCyc_GALACTUROCAT-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_GALACTUROCAT-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "EC:5.3.1.12",
     "label": "glucuronate isomerase"
    },
    {
     "id": "EC:1.1.1.58",
     "label": "tagaturonate reductase"
    },
    {
     "id": "EC:4.2.1.7",
     "label": "altronate dehydratase"
    },
    {
     "id": "EC:2.7.1.45",
     "label": "2-dehydro-3-deoxygluconokinase"
    },
    {
     "id": "EC:4.1.2.14",
     "label": "2-dehydro-3-deoxy-phosphogluconate aldolase"
    }
   ],
   "reactions": [
    "RHEA:15958",
    "RHEA:14798",
    "RHEA:17090",
    "RHEA:27703",
    "RHEA:17815"
   ]
  },
  {
   "id": "MetaCyc:GALLATE-DEGRADATION-I-PWY",
   "label": "gallate degradation II",
   "pathway_type": "degradation",
   "page": "records/MetaCyc_GALLATE-DEGRADATION-I-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_GALLATE-DEGRADATION-I-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:303",
     "label": "Pseudomonas putida"
    }
   ],
   "proteins": [
    {
     "id": "NCBIProtein:BAI50711.1",
     "label": "4-oxalomesaconate hydratase [Comamonas sp. E6]"
    }
   ],
   "reactions": [
    "MetaCyc:RXN-11861",
    "RHEA:10645",
    "RHEA:28932",
    "RHEA:17403",
    "RHEA:28936",
    "MetaCyc:TCA",
    "MetaCyc:PROTOCATECHUATE-34-DIOXYGENASE-RXN",
    "MetaCyc:RXN-12074",
    "MetaCyc:OXALODECARB-RXN",
    "MetaCyc:4.1.3.17-RXN",
    "RHEA:18170"
   ]
  },
  {
   "id": "MetaCyc:GALLATE-DEGRADATION-II-PWY",
   "label": "gallate degradation I",
   "pathway_type": "aromatic-compound-catabolism",
   "page": "records/MetaCyc_GALLATE-DEGRADATION-II-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_GALLATE-DEGRADATION-II-PWY.html",
   "taxa": [],
   "proteins": [
    {
     "id": "UniProtKB:E8ZB61",
     "label": "Gallate transporter"
    },
    {
     "id": "UniProtKB:Q88JX6",
     "label": "Porin-like protein GalP"
    },
    {
     "id": "UniProtKB:Q88JX7",
     "label": "HTH-type transcriptional regulator GalR"
    },
    {
     "id": "NCBIProtein:BAI50711.1",
     "label": "4-oxalomesaconate hydratase [Comamonas sp. E6]"
    }
   ],
   "reactions": [
    "RHEA:28928",
    "RHEA:28932",
    "RHEA:17403",
    "RHEA:28936",
    "MetaCyc:TCA",
    "MetaCyc:PWY-6339",
    "GO:0046943",
    "GO:1905039",
    "GO:0015288"
   ]
  },
  {
   "id": "MetaCyc:GLCMANNANAUT-PWY",
   "label": "superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/MetaCyc_GLCMANNANAUT-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_GLCMANNANAUT-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0A6L4",
     "label": "N-acetylneuraminate lyase"
    },
    {
     "id": "UniProtKB:P45425",
     "label": "N-acetylmannosamine kinase"
    },
    {
     "id": "UniProtKB:P0A761",
     "label": "N-acetylmannosamine-6-phosphate 2-epimerase"
    },
    {
     "id": "UniProtKB:P0AF18",
     "label": "N-acetylglucosamine-6-phosphate deacetylase"
    },
    {
     "id": "UniProtKB:P0A759",
     "label": "Glucosamine-6-phosphate deaminase"
    },
    {
     "id": "UniProtKB:P45424",
     "label": "N-acetylneuraminate anomerase NanQ"
    },
    {
     "id": "UniProtKB:P41036",
     "label": "Sialic acid transporter NanT"
    },
    {
     "id": "UniProtKB:P0A8W0",
     "label": "HTH-type transcriptional repressor NanR"
    },
    {
     "id": "UniProtKB:P50456",
     "label": "DNA-binding transcriptional repressor Mlc"
    },
    {
     "id": "UniProtKB:P69801",
     "label": "PTS system mannose-specific EIIC component"
    },
    {
     "id": "UniProtKB:P69805",
     "label": "PTS system mannose-specific EIID component"
    },
    {
     "id": "UniProtKB:P69797",
     "label": "PTS system mannose-specific EIIAB component"
    },
    {
     "id": "UniProtKB:P09323",
     "label": "PTS system N-acetylglucosamine-specific EIICBA component"
    },
    {
     "id": "UniProtKB:P08839",
     "label": "Phosphoenolpyruvate-protein phosphotransferase"
    },
    {
     "id": "UniProtKB:P0A9Z1",
     "label": "Nitrogen regulatory protein P-II 1"
    },
    {
     "id": "UniProtKB:P0AF20",
     "label": "DNA-binding transcriptional dual regulator NagC"
    },
    {
     "id": "UniProtKB:P0ACJ8",
     "label": "DNA-binding transcriptional dual regulator CRP"
    }
   ],
   "reactions": [
    "MetaCyc:PWY0-1324",
    "MetaCyc:GLUAMCAT-PWY",
    "MetaCyc:GLYCOLYSIS",
    "RHEA:67737",
    "RHEA:67741",
    "RHEA:23297",
    "RHEA:25254",
    "RHEA:25259",
    "RHEA:22937",
    "RHEA:12173",
    "RHEA:28989",
    "RHEA:49241",
    "RHEA:23881",
    "BiGG:ACMANAptspp"
   ]
  },
  {
   "id": "MetaCyc:GLUAMCAT-PWY",
   "label": "N-acetylglucosamine degradation I",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/MetaCyc_GLUAMCAT-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_GLUAMCAT-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:3.5.1.25",
     "label": "N-acetylglucosamine-6-phosphate deacetylase"
    },
    {
     "id": "EC:3.5.99.6",
     "label": "glucosamine-6-phosphate deaminase"
    },
    {
     "id": "UniProtKB:P0A759",
     "label": "Glucosamine-6-phosphate deaminase"
    },
    {
     "id": "UniProtKB:P0AF18",
     "label": "N-acetylglucosamine-6-phosphate deacetylase"
    }
   ],
   "reactions": [
    "RHEA:22937",
    "RHEA:12173"
   ]
  },
  {
   "id": "MetaCyc:GLUCARDEG-PWY",
   "label": "D-glucarate degradation I",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/MetaCyc_GLUCARDEG-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_GLUCARDEG-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:2",
     "label": "Bacteria"
    }
   ],
   "proteins": [
    {
     "id": "EC:4.2.1.40",
     "label": "D-glucarate dehydratase"
    },
    {
     "id": "EC:1.1.1.60",
     "label": "tartronate-semialdehyde reductase"
    },
    {
     "id": "EC:2.7.1.165",
     "label": "D-glycerate 2-kinase"
    }
   ],
   "reactions": [
    "RHEA:14574",
    "RHEA:18843",
    "RHEA:18847",
    "RHEA:27378",
    "RHEA:27727"
   ]
  },
  {
   "id": "MetaCyc:GLUTATHIONESYN-PWY",
   "label": "glutathione biosynthesis",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/MetaCyc_GLUTATHIONESYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_GLUTATHIONESYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:6.3.2.2",
     "label": "glutamate--cysteine ligase"
    },
    {
     "id": "EC:6.3.2.3",
     "label": "glutathione synthase"
    },
    {
     "id": "UniProtKB:P04425",
     "label": "Glutathione synthetase"
    },
    {
     "id": "UniProtKB:P0A6W9",
     "label": "Glutamate--cysteine ligase"
    },
    {
     "id": "UniProtKB:P77213",
     "label": "Putative glutamate--cysteine ligase 2"
    }
   ],
   "reactions": [
    "RHEA:13286",
    "RHEA:13558"
   ]
  },
  {
   "id": "MetaCyc:GLUTORN-PWY",
   "label": "L-ornithine biosynthesis I",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_GLUTORN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_GLUTORN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.3.1.1",
     "label": "N-acetylglutamate synthase"
    },
    {
     "id": "EC:2.7.2.8",
     "label": "acetylglutamate kinase"
    },
    {
     "id": "EC:1.2.1.38",
     "label": "N-acetyl-gamma-glutamyl-phosphate reductase"
    },
    {
     "id": "EC:2.6.1.11",
     "label": "acetylornithine aminotransferase"
    },
    {
     "id": "EC:3.5.1.16",
     "label": "acetylornithine deacetylase"
    },
    {
     "id": "UniProtKB:P0A6C5",
     "label": "Amino-acid acetyltransferase"
    },
    {
     "id": "UniProtKB:P0A6C8",
     "label": "Acetylglutamate kinase"
    },
    {
     "id": "UniProtKB:P11446",
     "label": "N-acetyl-gamma-glutamyl-phosphate reductase"
    },
    {
     "id": "UniProtKB:P18335",
     "label": "Acetylornithine/succinyldiaminopimelate aminotransferase"
    },
    {
     "id": "UniProtKB:P23908",
     "label": "Acetylornithine deacetylase"
    }
   ],
   "reactions": [
    "RHEA:24293",
    "RHEA:14630",
    "RHEA:21590",
    "RHEA:18051",
    "RHEA:15942"
   ]
  },
  {
   "id": "MetaCyc:GLYCEROLMETAB-PWY",
   "label": "glycerol degradation V",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/MetaCyc_GLYCEROLMETAB-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_GLYCEROLMETAB-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "EC:1.1.1.6",
     "label": "glycerol dehydrogenase"
    },
    {
     "id": "EC:2.7.1.121",
     "label": "dihydroxyacetone kinase"
    }
   ],
   "reactions": [
    "RHEA:18382",
    "RHEA:13770"
   ]
  },
  {
   "id": "MetaCyc:GLYOXYLATE-BYPASS",
   "label": "glyoxylate cycle",
   "pathway_type": "central-carbon-metabolism",
   "page": "records/MetaCyc_GLYOXYLATE-BYPASS.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_GLYOXYLATE-BYPASS.html",
   "taxa": [
    {
     "id": "NCBITaxon:1773",
     "label": "Mycobacterium tuberculosis"
    }
   ],
   "proteins": [
    {
     "id": "EC:4.1.3.1",
     "label": "isocitrate lyase"
    },
    {
     "id": "EC:2.3.3.9",
     "label": "malate synthase"
    },
    {
     "id": "EC:2.3.3.1",
     "label": "citrate (Si)-synthase"
    },
    {
     "id": "EC:4.2.1.3",
     "label": "aconitate hydratase"
    },
    {
     "id": "EC:1.1.1.37",
     "label": "(S)-malate dehydrogenase (NAD(+), oxaloacetate-forming)"
    },
    {
     "id": "UniProtKB:O07717",
     "label": "Putative isocitrate lyase subunit B"
    },
    {
     "id": "UniProtKB:O07718",
     "label": "Putative isocitrate lyase subunit A"
    },
    {
     "id": "UniProtKB:P9WK13",
     "label": "Malate dehydrogenase"
    },
    {
     "id": "UniProtKB:P9WK17",
     "label": "Malate synthase G"
    },
    {
     "id": "UniProtKB:P9WKK7",
     "label": "Isocitrate lyase"
    }
   ],
   "reactions": [
    "RHEA:13246",
    "RHEA:18182",
    "RHEA:16846",
    "RHEA:10229",
    "RHEA:22145",
    "RHEA:21433"
   ]
  },
  {
   "id": "MetaCyc:HISTSYN-PWY",
   "label": "L-histidine biosynthesis",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_HISTSYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_HISTSYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.4.2.17",
     "label": "ATP phosphoribosyltransferase"
    },
    {
     "id": "EC:3.6.1.31",
     "label": "phosphoribosyl-ATP diphosphatase"
    },
    {
     "id": "EC:3.5.4.19",
     "label": "phosphoribosyl-AMP cyclohydrolase"
    },
    {
     "id": "EC:5.3.1.16",
     "label": "phosphoribulosylformimino-AICAR-phosphate isomerase"
    },
    {
     "id": "EC:4.3.2.10",
     "label": "imidazoleglycerol-phosphate synthase"
    },
    {
     "id": "EC:4.2.1.19",
     "label": "imidazoleglycerol-phosphate dehydratase"
    },
    {
     "id": "EC:2.6.1.9",
     "label": "histidinol-phosphate aminotransferase"
    },
    {
     "id": "EC:3.1.3.15",
     "label": "histidinol-phosphatase"
    },
    {
     "id": "EC:1.1.1.23",
     "label": "histidinol dehydrogenase"
    },
    {
     "id": "UniProtKB:P06986",
     "label": "Histidinol-phosphate aminotransferase"
    },
    {
     "id": "UniProtKB:P06987",
     "label": "Histidine biosynthesis bifunctional protein HisB"
    },
    {
     "id": "UniProtKB:P06988",
     "label": "Histidinol dehydrogenase"
    },
    {
     "id": "UniProtKB:P06989",
     "label": "Histidine biosynthesis bifunctional protein HisIE"
    },
    {
     "id": "UniProtKB:P10371",
     "label": "1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase"
    },
    {
     "id": "UniProtKB:P60595",
     "label": "Imidazole glycerol phosphate synthase subunit HisH"
    },
    {
     "id": "UniProtKB:P60664",
     "label": "Imidazole glycerol phosphate synthase subunit HisF"
    },
    {
     "id": "UniProtKB:P60757",
     "label": "ATP phosphoribosyltransferase"
    }
   ],
   "reactions": [
    "RHEA:18475",
    "RHEA:22829",
    "RHEA:20050",
    "RHEA:15470",
    "RHEA:24794",
    "RHEA:11041",
    "RHEA:23746",
    "RHEA:14466",
    "RHEA:33800",
    "RHEA:33804"
   ]
  },
  {
   "id": "MetaCyc:HOMOSER-METSYN-PWY",
   "label": "L-methionine biosynthesis I",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_HOMOSER-METSYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_HOMOSER-METSYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.3.1.46",
     "label": "homoserine O-succinyltransferase"
    },
    {
     "id": "EC:2.5.1.48",
     "label": "cystathionine gamma-synthase"
    },
    {
     "id": "UniProtKB:P06721",
     "label": "cystathionine beta-lyase MetC"
    },
    {
     "id": "EC:2.1.1.13",
     "label": "methionine synthase"
    },
    {
     "id": "EC:2.1.1.14",
     "label": "5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase"
    },
    {
     "id": "UniProtKB:P00935",
     "label": "Cystathionine gamma-synthase"
    },
    {
     "id": "UniProtKB:P07623",
     "label": "Homoserine O-succinyltransferase"
    },
    {
     "id": "UniProtKB:P0AF93",
     "label": "2-iminobutanoate/2-iminopropanoate deaminase"
    },
    {
     "id": "UniProtKB:P13009",
     "label": "Methionine synthase"
    },
    {
     "id": "UniProtKB:P25665",
     "label": "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase"
    }
   ],
   "reactions": [
    "RHEA:22009",
    "RHEA:20398",
    "RHEA:11173",
    "RHEA:21197",
    "RHEA:43021",
    "RHEA:40668",
    "RHEA:40672"
   ]
  },
  {
   "id": "MetaCyc:HOMOSER-THRESYN-PWY",
   "label": "L-threonine biosynthesis",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_HOMOSER-THRESYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_HOMOSER-THRESYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.7.1.39",
     "label": "homoserine kinase"
    },
    {
     "id": "EC:4.2.3.1",
     "label": "threonine synthase"
    },
    {
     "id": "UniProtKB:P00547",
     "label": "Homoserine kinase"
    },
    {
     "id": "UniProtKB:P00934",
     "label": "Threonine synthase"
    }
   ],
   "reactions": [
    "RHEA:13986",
    "RHEA:10841"
   ]
  },
  {
   "id": "MetaCyc:HOMOSERSYN-PWY",
   "label": "L-homoserine biosynthesis",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_HOMOSERSYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_HOMOSERSYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.7.2.4",
     "label": "aspartate kinase"
    },
    {
     "id": "EC:1.2.1.11",
     "label": "aspartate-semialdehyde dehydrogenase"
    },
    {
     "id": "EC:1.1.1.3",
     "label": "homoserine dehydrogenase"
    },
    {
     "id": "UniProtKB:P00561",
     "label": "Bifunctional aspartokinase/homoserine dehydrogenase 1"
    },
    {
     "id": "UniProtKB:P00562",
     "label": "Bifunctional aspartokinase/homoserine dehydrogenase 2"
    },
    {
     "id": "UniProtKB:P08660",
     "label": "Lysine-sensitive aspartokinase 3"
    },
    {
     "id": "UniProtKB:P0A9Q9",
     "label": "Aspartate-semialdehyde dehydrogenase"
    }
   ],
   "reactions": [
    "RHEA:23777",
    "RHEA:24286",
    "RHEA:15763"
   ]
  },
  {
   "id": "MetaCyc:ILEUSYN-PWY",
   "label": "L-isoleucine biosynthesis I (from threonine)",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_ILEUSYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_ILEUSYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:4.3.1.19",
     "label": "threonine ammonia-lyase"
    },
    {
     "id": "EC:2.2.1.6",
     "label": "acetolactate synthase"
    },
    {
     "id": "EC:1.1.1.86",
     "label": "ketol-acid reductoisomerase (NADP(+))"
    },
    {
     "id": "EC:4.2.1.9",
     "label": "dihydroxy-acid dehydratase"
    },
    {
     "id": "EC:2.6.1.42",
     "label": "branched-chain-amino-acid transaminase"
    },
    {
     "id": "UniProtKB:P00893",
     "label": "Acetolactate synthase isozyme 3 large subunit"
    },
    {
     "id": "UniProtKB:P04968",
     "label": "L-threonine dehydratase biosynthetic IlvA"
    },
    {
     "id": "UniProtKB:P05791",
     "label": "Dihydroxy-acid dehydratase"
    },
    {
     "id": "UniProtKB:P05793",
     "label": "Ketol-acid reductoisomerase (NADP(+))"
    },
    {
     "id": "UniProtKB:P0AB80",
     "label": "Branched-chain-amino-acid aminotransferase"
    },
    {
     "id": "UniProtKB:P0AF93",
     "label": "2-iminobutanoate/2-iminopropanoate deaminase"
    },
    {
     "id": "UniProtKB:P0AGF6",
     "label": "L-threonine dehydratase catabolic TdcB"
    }
   ],
   "reactions": [
    "RHEA:27655",
    "RHEA:13495",
    "RHEA:27695",
    "RHEA:24803",
    "RHEA:40676",
    "RHEA:39968",
    "RHEA:39976"
   ]
  },
  {
   "id": "MetaCyc:LEUSYN-PWY",
   "label": "L-leucine biosynthesis",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_LEUSYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_LEUSYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.3.3.13",
     "label": "2-isopropylmalate synthase"
    },
    {
     "id": "EC:4.2.1.33",
     "label": "3-isopropylmalate dehydratase"
    },
    {
     "id": "EC:1.1.1.85",
     "label": "3-isopropylmalate dehydrogenase"
    },
    {
     "id": "EC:2.6.1.42",
     "label": "branched-chain-amino-acid transaminase"
    },
    {
     "id": "UniProtKB:P09151",
     "label": "2-isopropylmalate synthase"
    },
    {
     "id": "UniProtKB:P0A6A6",
     "label": "3-isopropylmalate dehydratase large subunit"
    },
    {
     "id": "UniProtKB:P0AB80",
     "label": "Branched-chain-amino-acid aminotransferase"
    },
    {
     "id": "UniProtKB:P30125",
     "label": "3-isopropylmalate dehydrogenase"
    },
    {
     "id": "UniProtKB:P30126",
     "label": "3-isopropylmalate dehydratase small subunit"
    }
   ],
   "reactions": [
    "RHEA:21525",
    "RHEA:18323",
    "RHEA:16295",
    "RHEA:10678",
    "RHEA:10893",
    "RHEA:25079"
   ]
  },
  {
   "id": "MetaCyc:LYXMET-PWY",
   "label": "L-lyxose degradation",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/MetaCyc_LYXMET-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_LYXMET-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    },
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P32170",
     "label": "L-rhamnose isomerase"
    },
    {
     "id": "UniProtKB:P37677",
     "label": "L-xylulose/3-keto-L-gulonate kinase"
    },
    {
     "id": "UniProtKB:P37679",
     "label": "Putative L-ribulose-5-phosphate 3-epimerase SgbU"
    },
    {
     "id": "UniProtKB:P37680",
     "label": "L-ribulose-5-phosphate 4-epimerase SgbE"
    },
    {
     "id": "UniProtKB:P08203",
     "label": "L-ribulose-5-phosphate 4-epimerase AraD"
    },
    {
     "id": "UniProtKB:P27125",
     "label": "L-rhamnose-proton symporter"
    },
    {
     "id": "UniProtKB:P37671",
     "label": "HTH-type transcriptional repressor PlaR"
    },
    {
     "id": "Entrez:945294",
     "label": "araD"
    },
    {
     "id": "Entrez:948398",
     "label": "rhaT"
    },
    {
     "id": "Entrez:948400",
     "label": "rhaA"
    },
    {
     "id": "Entrez:948099",
     "label": "sgbE"
    },
    {
     "id": "UniProtKB:P0A6X7",
     "label": "Integration host factor subunit alpha"
    },
    {
     "id": "UniProtKB:P0A6Y1",
     "label": "Integration host factor subunit beta"
    },
    {
     "id": "UniProtKB:P0A9Q1",
     "label": "Aerobic respiration control protein ArcA"
    },
    {
     "id": "UniProtKB:P09377",
     "label": "HTH-type transcriptional activator RhaS"
    },
    {
     "id": "Entrez:948084",
     "label": "plaR"
    },
    {
     "id": "Entrez:948101",
     "label": "lyxK"
    },
    {
     "id": "UniProtKB:P0ACJ8",
     "label": "DNA-binding transcriptional dual regulator CRP"
    },
    {
     "id": "Entrez:948100",
     "label": "sgbU"
    },
    {
     "id": "UniProtKB:P76268",
     "label": "HTH-type transcriptional regulator KdgR"
    },
    {
     "id": "Entrez:946129",
     "label": "kdgR"
    }
   ],
   "reactions": [
    "MetaCyc:LYXISOM-RXN",
    "RHEA:18870",
    "RHEA:18499",
    "RHEA:22369",
    "RHEA:29993",
    "MetaCyc:NONOXIPENT-PWY",
    "MetaCyc:PWY-5257",
    "PathBank:SMP0121065"
   ]
  },
  {
   "id": "MetaCyc:METH-ACETATE-PWY",
   "label": "methanogenesis from acetate",
   "pathway_type": "methanogenesis",
   "page": "records/MetaCyc_METH-ACETATE-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_METH-ACETATE-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:2207",
     "label": "Methanosarcina"
    },
    {
     "id": "NCBITaxon:2214",
     "label": "Methanosarcina acetivorans"
    },
    {
     "id": "NCBITaxon:2208",
     "label": "Methanosarcina barkeri"
    },
    {
     "id": "NCBITaxon:2210",
     "label": "Methanosarcina thermophila"
    },
    {
     "id": "NCBITaxon:2222",
     "label": "Methanothrix"
    },
    {
     "id": "NCBITaxon:2224",
     "label": "Methanothrix thermoacetophila"
    }
   ],
   "proteins": [],
   "reactions": [
    "MetaCyc:1.2.7.4-RXN",
    "MetaCyc:ACETATEKIN-RXN",
    "MetaCyc:ACETYLSYNCLTH-RXN",
    "MetaCyc:MTRMBARK-RXN",
    "MetaCyc:PHOSACETYLTRANS-RXN",
    "MetaCyc:RXN-12908"
   ]
  },
  {
   "id": "MetaCyc:METHANOGENESIS-PWY",
   "label": "methanogenesis from H2 and CO2",
   "pathway_type": "methanogenesis",
   "page": "records/MetaCyc_METHANOGENESIS-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_METHANOGENESIS-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:2208",
     "label": "Methanosarcina barkeri"
    },
    {
     "id": "NCBITaxon:145262",
     "label": "Methanothermobacter thermautotrophicus"
    },
    {
     "id": "NCBITaxon:2179",
     "label": "Methanothermus"
    }
   ],
   "proteins": [],
   "reactions": [
    "MetaCyc:2.1.1.86-RXN",
    "MetaCyc:2.3.1.101-RXN",
    "MetaCyc:3.5.4.27-RXN",
    "MetaCyc:FORMYLMETHANOFURAN-DEHYDROGENASE-RXN",
    "MetaCyc:H2-METHYLENE-THMPT-DEHYDRO-RXN",
    "MetaCyc:METHELENE-THMPT-OXI-RXN"
   ]
  },
  {
   "id": "MetaCyc:NADPHOS-DEPHOS-PWY",
   "label": "NAD phosphorylation and dephosphorylation",
   "pathway_type": "cofactor metabolism",
   "page": "records/MetaCyc_NADPHOS-DEPHOS-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_NADPHOS-DEPHOS-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0A7B3",
     "label": "NAD kinase"
    },
    {
     "id": "UniProtKB:P00634",
     "label": "Alkaline phosphatase"
    },
    {
     "id": "UniProtKB:P07001",
     "label": "NAD(P) transhydrogenase subunit alpha"
    },
    {
     "id": "UniProtKB:P0AB67",
     "label": "NAD(P) transhydrogenase subunit beta"
    },
    {
     "id": "UniProtKB:P27306",
     "label": "Soluble pyridine nucleotide transhydrogenase"
    },
    {
     "id": "UniProtKB:P22255",
     "label": "3'(2'),5'-bisphosphate nucleotidase CysQ"
    },
    {
     "id": "UniProtKB:P0A9Q1",
     "label": "Aerobic respiration control protein ArcA"
    },
    {
     "id": "UniProtKB:P0AFJ5",
     "label": "Phosphate regulon transcriptional regulatory protein PhoB"
    },
    {
     "id": "UniProtKB:P0ACJ0",
     "label": "Leucine-responsive regulatory protein"
    },
    {
     "id": "UniProtKB:Q47005",
     "label": "Nitrogen assimilation regulatory protein nac"
    },
    {
     "id": "UniProtKB:P0ACJ8",
     "label": "DNA-binding transcriptional dual regulator CRP"
    },
    {
     "id": "UniProtKB:P0A6X7",
     "label": "Integration host factor subunit alpha"
    },
    {
     "id": "UniProtKB:P0A6Y1",
     "label": "Integration host factor subunit beta"
    },
    {
     "id": "UniProtKB:P0ACF8",
     "label": "DNA-binding protein H-NS"
    },
    {
     "id": "UniProtKB:P0A8S1",
     "label": "HTH-type transcriptional regulator ArgP"
    },
    {
     "id": "UniProtKB:P0A9A9",
     "label": "Ferric uptake regulation protein"
    },
    {
     "id": "UniProtKB:P07604",
     "label": "HTH-type transcriptional regulatory protein TyrR"
    },
    {
     "id": "UniProtKB:P37338",
     "label": "HTH-type transcriptional repressor GlaR"
    },
    {
     "id": "Entrez:945041",
     "label": "phoA"
    },
    {
     "id": "Entrez:946628",
     "label": "pntA"
    },
    {
     "id": "Entrez:946144",
     "label": "pntB"
    },
    {
     "id": "Entrez:948461",
     "label": "sthA"
    },
    {
     "id": "Entrez:948728",
     "label": "cysQ"
    }
   ],
   "reactions": [
    "RHEA:18630",
    "RHEA:28051",
    "RHEA:47994",
    "RHEA:11693"
   ]
  },
  {
   "id": "MetaCyc:NONMEVIPP-PWY",
   "label": "methylerythritol phosphate pathway I",
   "pathway_type": "isoprenoid-precursor-biosynthesis",
   "page": "records/MetaCyc_NONMEVIPP-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_NONMEVIPP-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P77488",
     "label": "1-deoxy-D-xylulose-5-phosphate synthase"
    },
    {
     "id": "UniProtKB:P45568",
     "label": "1-deoxy-D-xylulose 5-phosphate reductoisomerase"
    },
    {
     "id": "UniProtKB:Q46893",
     "label": "2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase"
    },
    {
     "id": "UniProtKB:P62615",
     "label": "4-diphosphocytidyl-2-C-methyl-D-erythritol kinase"
    },
    {
     "id": "UniProtKB:P62617",
     "label": "2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase"
    },
    {
     "id": "UniProtKB:P62620",
     "label": "4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)"
    },
    {
     "id": "UniProtKB:P62623",
     "label": "4-hydroxy-3-methylbut-2-enyl diphosphate reductase"
    },
    {
     "id": "UniProtKB:Q46822",
     "label": "Isopentenyl-diphosphate Delta-isomerase"
    }
   ],
   "reactions": [
    "RHEA:12606",
    "RHEA:13719",
    "RHEA:13430",
    "RHEA:18438",
    "RHEA:23865",
    "RHEA:43606",
    "RHEA:24490",
    "RHEA:24827",
    "RHEA:23285"
   ]
  },
  {
   "id": "MetaCyc:NONOXIPENT-PWY",
   "label": "pentose phosphate pathway (non-oxidative branch) I",
   "pathway_type": "central-carbon-metabolism",
   "page": "records/MetaCyc_NONOXIPENT-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_NONOXIPENT-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:5.3.1.6",
     "label": "ribose-5-phosphate isomerase"
    },
    {
     "id": "EC:5.1.3.1",
     "label": "ribulose-phosphate 3-epimerase"
    },
    {
     "id": "EC:2.2.1.1",
     "label": "transketolase"
    },
    {
     "id": "EC:2.2.1.2",
     "label": "transaldolase"
    },
    {
     "id": "UniProtKB:P0A7Z0",
     "label": "Ribose-5-phosphate isomerase A"
    },
    {
     "id": "UniProtKB:P0A867",
     "label": "Transaldolase A"
    },
    {
     "id": "UniProtKB:P0A870",
     "label": "Transaldolase B"
    },
    {
     "id": "UniProtKB:P0AG07",
     "label": "Ribulose-phosphate 3-epimerase"
    },
    {
     "id": "UniProtKB:P27302",
     "label": "Transketolase 1"
    },
    {
     "id": "UniProtKB:P33570",
     "label": "Transketolase 2"
    },
    {
     "id": "UniProtKB:P37351",
     "label": "Ribose-5-phosphate isomerase B"
    }
   ],
   "reactions": [
    "RHEA:14659",
    "RHEA:13678",
    "RHEA:10510",
    "RHEA:17054",
    "RHEA:27627"
   ]
  },
  {
   "id": "MetaCyc:OXIDATIVEPENT-PWY",
   "label": "pentose phosphate pathway (oxidative branch) I",
   "pathway_type": "central-carbon-metabolism",
   "page": "records/MetaCyc_OXIDATIVEPENT-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_OXIDATIVEPENT-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:1.1.1.49",
     "label": "glucose-6-phosphate dehydrogenase"
    },
    {
     "id": "EC:3.1.1.31",
     "label": "6-phosphogluconolactonase"
    },
    {
     "id": "EC:1.1.1.44",
     "label": "6-phosphogluconate dehydrogenase"
    },
    {
     "id": "UniProtKB:P00350",
     "label": "6-phosphogluconate dehydrogenase, decarboxylating"
    },
    {
     "id": "UniProtKB:P0AC53",
     "label": "Glucose-6-phosphate 1-dehydrogenase"
    },
    {
     "id": "UniProtKB:P52697",
     "label": "6-phosphogluconolactonase"
    }
   ],
   "reactions": [
    "RHEA:15842",
    "RHEA:12557",
    "RHEA:10117"
   ]
  },
  {
   "id": "MetaCyc:P101-PWY",
   "label": "ectoine biosynthesis",
   "pathway_type": "compatible-solute-biosynthesis",
   "page": "records/MetaCyc_P101-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_P101-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:2746",
     "label": "Halomonas elongata"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.7.2.4",
     "label": "aspartate kinase"
    },
    {
     "id": "EC:1.2.1.11",
     "label": "aspartate-semialdehyde dehydrogenase"
    },
    {
     "id": "EC:2.6.1.76",
     "label": "diaminobutyrate-2-oxoglutarate transaminase"
    },
    {
     "id": "EC:2.3.1.178",
     "label": "diaminobutyrate acetyltransferase"
    },
    {
     "id": "EC:4.2.1.108",
     "label": "ectoine synthase"
    },
    {
     "id": "UniProtKB:E1V7V7",
     "label": "Diaminobutyrate--2-oxoglutarate transaminase"
    },
    {
     "id": "UniProtKB:O52249",
     "label": "L-2,4-diaminobutyric acid acetyltransferase"
    },
    {
     "id": "UniProtKB:O52250",
     "label": "Diaminobutyrate--2-oxoglutarate transaminase"
    },
    {
     "id": "UniProtKB:O52251",
     "label": "L-ectoine synthase"
    }
   ],
   "reactions": [
    "RHEA:23777",
    "RHEA:24286",
    "RHEA:11162",
    "RHEA:16902",
    "RHEA:17282"
   ]
  },
  {
   "id": "MetaCyc:P121-PWY",
   "label": "adenine and adenosine salvage I",
   "pathway_type": "nucleotide-salvage",
   "page": "records/MetaCyc_P121-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_P121-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P69503",
     "label": "Adenine phosphoribosyltransferase"
    },
    {
     "id": "UniProtKB:P0ABP8",
     "label": "Purine nucleoside phosphorylase DeoD-type"
    }
   ],
   "reactions": [
    "RHEA:27643",
    "RHEA:16611"
   ]
  },
  {
   "id": "MetaCyc:P184-PWY",
   "label": "protocatechuate degradation I (meta-cleavage pathway)",
   "pathway_type": "aromatic-compound-catabolism",
   "page": "records/MetaCyc_P184-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_P184-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:285",
     "label": "Comamonas testosteroni"
    },
    {
     "id": "NCBITaxon:80866",
     "label": "Delftia acidovorans"
    },
    {
     "id": "NCBITaxon:47882",
     "label": "Phytopseudomonas straminea"
    },
    {
     "id": "NCBITaxon:502559",
     "label": "Sphingomonas sp. SYK6"
    },
    {
     "id": "NCBITaxon:303",
     "label": "Pseudomonas putida"
    },
    {
     "id": "NCBITaxon:160488",
     "label": "Pseudomonas putida KT2440"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q8RQV9",
     "label": "LigR protein"
    }
   ],
   "reactions": [
    "RHEA:24045",
    "MetaCyc:R107-RXN",
    "RHEA:29588",
    "RHEA:10645",
    "RHEA:28932",
    "RHEA:17403",
    "RHEA:28936",
    "RHEA:15642"
   ]
  },
  {
   "id": "MetaCyc:P2-PWY",
   "label": "citrate lyase activation",
   "pathway_type": "protein-prosthetic-group-biosynthesis-and-activation",
   "page": "records/MetaCyc_P2-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_P2-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P77231",
     "label": "2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase"
    },
    {
     "id": "UniProtKB:P0A6G5",
     "label": "Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase"
    },
    {
     "id": "UniProtKB:P77390",
     "label": "[Citrate [pro-3S]-lyase] ligase"
    }
   ],
   "reactions": [
    "RHEA:15118",
    "RHEA:16334",
    "RHEA:23789"
   ]
  },
  {
   "id": "MetaCyc:P321-PWY",
   "label": "benzoyl-CoA degradation III (anaerobic)",
   "pathway_type": "degradation",
   "page": "records/MetaCyc_P321-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_P321-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:1076",
     "label": "Rhodopseudomonas palustris"
    },
    {
     "id": "NCBITaxon:258594",
     "label": "Rhodopseudomonas palustris CGA009"
    },
    {
     "id": "NCBITaxon:59405",
     "label": "Thauera aromatica"
    },
    {
     "id": "NCBITaxon:44139",
     "label": "Thauera aromatica K172"
    },
    {
     "id": "NCBITaxon:56780",
     "label": "Syntrophus aciditrophicus SB"
    },
    {
     "id": "NCBITaxon:342108",
     "label": "Paramagnetospirillum magneticum AMB-1"
    },
    {
     "id": "NCBITaxon:269799",
     "label": "Geobacter metallireducens GS-15"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:O87876",
     "label": "Benzoyl-CoA reductase subunit A"
    },
    {
     "id": "UniProtKB:O87875",
     "label": "Benzoyl-CoA reductase subunit B"
    },
    {
     "id": "UniProtKB:O87874",
     "label": "Benzoyl-CoA reductase subunit C"
    },
    {
     "id": "UniProtKB:O87877",
     "label": "Benzoyl-CoA reductase subunit D"
    },
    {
     "id": "UniProtKB:O07460",
     "label": "BadD"
    },
    {
     "id": "UniProtKB:O07461",
     "label": "BadE"
    },
    {
     "id": "UniProtKB:O07462",
     "label": "BadF"
    },
    {
     "id": "UniProtKB:O07463",
     "label": "BadG"
    },
    {
     "id": "UniProtKB:O07456",
     "label": "BadI"
    },
    {
     "id": "UniProtKB:O07457",
     "label": "BadH"
    },
    {
     "id": "UniProtKB:O07453",
     "label": "BadK"
    },
    {
     "id": "UniProtKB:Q2LQN9",
     "label": "SYN_02587 cyclohex-1-ene-1-carbonyl-CoA dehydrogenase"
    },
    {
     "id": "UniProtKB:Q6N3I0",
     "label": "pimC"
    },
    {
     "id": "UniProtKB:Q6N3I1",
     "label": "pimD"
    },
    {
     "id": "UniProtKB:Q6N3H7",
     "label": "PimF"
    },
    {
     "id": "UniProtKB:Q6N3H9",
     "label": "PimB"
    },
    {
     "id": "UniProtKB:Q01980",
     "label": "AadR"
    },
    {
     "id": "UniProtKB:O07458",
     "label": "BadR"
    },
    {
     "id": "UniProtKB:O07465",
     "label": "BadM"
    },
    {
     "id": "UniProtKB:G3XCQ2",
     "label": "BadL"
    },
    {
     "id": "UniProtKB:Q2W1S9",
     "label": "MmBadL"
    },
    {
     "id": "UniProtKB:Q39TU9",
     "label": "GmBadL"
    }
   ],
   "reactions": [
    "MetaCyc:1.3.99.15-RXN",
    "MetaCyc:R265-RXN",
    "MetaCyc:R266-RXN",
    "MetaCyc:R267-RXN",
    "MetaCyc:R268-RXN",
    "MetaCyc:1.3.1.62-RXN",
    "MetaCyc:RXN-8031",
    "MetaCyc:1.1.1.259-RXN",
    "MetaCyc:RXN-8032",
    "RHEA:28551"
   ]
  },
  {
   "id": "MetaCyc:PANTO-PWY",
   "label": "phosphopantothenate biosynthesis I",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/MetaCyc_PANTO-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PANTO-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.1.2.11",
     "label": "3-methyl-2-oxobutanoate hydroxymethyltransferase"
    },
    {
     "id": "EC:1.1.1.169",
     "label": "2-dehydropantoate reductase"
    },
    {
     "id": "EC:6.3.2.1",
     "label": "pantoate--beta-alanine ligase"
    },
    {
     "id": "EC:2.7.1.33",
     "label": "pantothenate kinase"
    },
    {
     "id": "UniProtKB:P0A6I3",
     "label": "Pantothenate kinase"
    },
    {
     "id": "UniProtKB:P0A9J4",
     "label": "2-dehydropantoate 2-reductase"
    },
    {
     "id": "UniProtKB:P31057",
     "label": "3-methyl-2-oxobutanoate hydroxymethyltransferase"
    },
    {
     "id": "UniProtKB:P31663",
     "label": "Pantothenate synthetase"
    }
   ],
   "reactions": [
    "RHEA:11825",
    "RHEA:16235",
    "RHEA:10913",
    "RHEA:16374"
   ]
  },
  {
   "id": "MetaCyc:PHESYN",
   "label": "L-phenylalanine biosynthesis I",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_PHESYN.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PHESYN.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:5.4.99.5",
     "label": "chorismate mutase"
    },
    {
     "id": "EC:4.2.1.51",
     "label": "prephenate dehydratase"
    },
    {
     "id": "EC:2.6.1.57",
     "label": "aromatic-amino-acid transaminase"
    },
    {
     "id": "UniProtKB:P07023",
     "label": "T-protein"
    },
    {
     "id": "UniProtKB:P0A9J8",
     "label": "Bifunctional chorismate mutase/prephenate dehydratase"
    }
   ],
   "reactions": [
    "RHEA:13898",
    "RHEA:21649",
    "RHEA:25154"
   ]
  },
  {
   "id": "MetaCyc:PLPSAL-PWY",
   "label": "pyridoxal 5'-phosphate salvage I",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/MetaCyc_PLPSAL-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PLPSAL-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.7.1.35",
     "label": "pyridoxal kinase"
    },
    {
     "id": "EC:1.4.3.5",
     "label": "pyridoxine 5'-phosphate oxidase"
    },
    {
     "id": "UniProtKB:P0AFI7",
     "label": "Pyridoxine/pyridoxamine 5'-phosphate oxidase"
    },
    {
     "id": "UniProtKB:P40191",
     "label": "Pyridoxine/pyridoxal/pyridoxamine kinase"
    },
    {
     "id": "UniProtKB:P77150",
     "label": "Pyridoxal kinase PdxY"
    }
   ],
   "reactions": [
    "RHEA:10225",
    "RHEA:25105",
    "RHEA:15818",
    "RHEA:25109",
    "RHEA:15150"
   ]
  },
  {
   "id": "MetaCyc:PPGPPMET-PWY",
   "label": "ppGpp metabolism",
   "pathway_type": "metabolic-regulator-biosynthesis",
   "page": "records/MetaCyc_PPGPPMET-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PPGPPMET-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:2",
     "label": "Bacteria"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.7.4.6",
     "label": "nucleoside-diphosphate kinase"
    },
    {
     "id": "EC:2.7.6.5",
     "label": "GTP diphosphokinase"
    },
    {
     "id": "EC:3.1.7.2",
     "label": "guanosine-3',5'-bis(diphosphate) 3'-diphosphatase"
    },
    {
     "id": "EC:3.6.1.40",
     "label": "guanosine-5'-triphosphate,3'-diphosphate diphosphatase"
    }
   ],
   "reactions": [
    "RHEA:27687",
    "RHEA:33056",
    "RHEA:28099",
    "RHEA:22089",
    "RHEA:14254",
    "RHEA:13074"
   ]
  },
  {
   "id": "MetaCyc:PROSYN-PWY",
   "label": "L-proline biosynthesis I (from L-glutamate)",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_PROSYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PROSYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.7.2.11",
     "label": "glutamate 5-kinase"
    },
    {
     "id": "EC:1.2.1.41",
     "label": "glutamate-5-semialdehyde dehydrogenase"
    },
    {
     "id": "EC:1.5.1.2",
     "label": "pyrroline-5-carboxylate reductase"
    },
    {
     "id": "UniProtKB:P07004",
     "label": "Gamma-glutamyl phosphate reductase"
    },
    {
     "id": "UniProtKB:P0A7B5",
     "label": "Glutamate 5-kinase"
    },
    {
     "id": "UniProtKB:P0A9L8",
     "label": "Pyrroline-5-carboxylate reductase"
    }
   ],
   "reactions": [
    "RHEA:14878",
    "RHEA:19543",
    "RHEA:28235",
    "RHEA:14111"
   ]
  },
  {
   "id": "MetaCyc:PWY-1361",
   "label": "benzoyl-CoA degradation I (aerobic)",
   "pathway_type": "degradation",
   "page": "records/MetaCyc_PWY-1361.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-1361.html",
   "taxa": [
    {
     "id": "NCBITaxon:59406",
     "label": "Aromatoleum evansii"
    },
    {
     "id": "NCBITaxon:1422",
     "label": "Geobacillus stearothermophilus"
    },
    {
     "id": "NCBITaxon:266265",
     "label": "Paraburkholderia xenovorans LB400"
    },
    {
     "id": "NCBITaxon:198107",
     "label": "Azoarcus sp. CIB"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q9AIX6",
     "label": "Benzoyl-CoA oxygenase component A"
    },
    {
     "id": "UniProtKB:Q9AIX7",
     "label": "Benzoyl-CoA oxygenase component B"
    },
    {
     "id": "UniProtKB:Q84HH6",
     "label": "Benzoyl-CoA-dihydrodiol lyase"
    },
    {
     "id": "UniProtKB:Q84HH8",
     "label": "3,4-dehydroadipyl-CoA semialdehyde dehydrogenase"
    },
    {
     "id": "NCBIProtein:CCD33120.1",
     "label": "BoxR"
    },
    {
     "id": "NCBIProtein:AAQ08805.1",
     "label": "BzdR"
    }
   ],
   "reactions": [
    "RHEA:48313",
    "RHEA:48309",
    "RHEA:25392",
    "MetaCyc:RXN-2424",
    "RHEA:76649",
    "RHEA:34852",
    "RHEA:19483"
   ]
  },
  {
   "id": "MetaCyc:PWY-2361",
   "label": "3-oxoadipate degradation",
   "pathway_type": "degradation",
   "page": "records/MetaCyc_PWY-2361.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-2361.html",
   "taxa": [
    {
     "id": "NCBITaxon:303",
     "label": "Pseudomonas putida"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q52154",
     "label": "Pca regulon regulatory protein"
    }
   ],
   "reactions": [
    "RHEA:12049",
    "RHEA:19483"
   ]
  },
  {
   "id": "MetaCyc:PWY-2503",
   "label": "benzoate degradation I (aerobic)",
   "pathway_type": "aromatic-compound-degradation",
   "page": "records/MetaCyc_PWY-2503.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-2503.html",
   "taxa": [
    {
     "id": "NCBITaxon:471",
     "label": "Acinetobacter calcoaceticus"
    },
    {
     "id": "NCBITaxon:354",
     "label": "Azotobacter vinelandii"
    },
    {
     "id": "NCBITaxon:196627",
     "label": "Corynebacterium glutamicum ATCC 13032"
    },
    {
     "id": "NCBITaxon:106590",
     "label": "Cupriavidus necator"
    },
    {
     "id": "NCBITaxon:303",
     "label": "Pseudomonas putida"
    },
    {
     "id": "NCBITaxon:392499",
     "label": "Rhizorhabdus wittichii RW1"
    },
    {
     "id": "NCBITaxon:160488",
     "label": "Pseudomonas putida KT2440"
    },
    {
     "id": "NCBITaxon:379731",
     "label": "Stutzerimonas stutzeri A1501"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P23099",
     "label": "Toluate 1,2-dioxygenase subunit alpha"
    },
    {
     "id": "UniProtKB:P23100",
     "label": "Toluate 1,2-dioxygenase subunit beta"
    },
    {
     "id": "UniProtKB:P23101",
     "label": "Toluate 1,2-dioxygenase electron transfer component"
    },
    {
     "id": "UniProtKB:P23102",
     "label": "1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase"
    },
    {
     "id": "NCBIProtein:ABQ66426.1",
     "label": "ferredoxin [Rhizorhabdus wittichii RW1]"
    },
    {
     "id": "NCBIProtein:ABQ66656.1",
     "label": "ferredoxin [Rhizorhabdus wittichii RW1]"
    },
    {
     "id": "NCBIProtein:ABQ66734.1",
     "label": "ferredoxin [Rhizorhabdus wittichii RW1]"
    },
    {
     "id": "NCBIProtein:ABQ67365.1",
     "label": "ferredoxin [Rhizorhabdus wittichii RW1]"
    },
    {
     "id": "NCBIProtein:ABQ68203.1",
     "label": "ferredoxin [Rhizorhabdus wittichii RW1]"
    },
    {
     "id": "NCBIProtein:ABQ68414.1",
     "label": "FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Rhizorhabdus wittichii RW1]"
    },
    {
     "id": "NCBIProtein:ABQ68992.1",
     "label": "benzoate 1,2-dioxygenase, alpha subunit [Rhizorhabdus wittichii RW1]"
    },
    {
     "id": "NCBIProtein:ABQ68993.1",
     "label": "2-chlorobenzoate 1,2-dioxygenase [Rhizorhabdus wittichii RW1]"
    },
    {
     "id": "NCBIProtein:ABQ68994.1",
     "label": "short-chain dehydrogenase/reductase SDR [Rhizorhabdus wittichii RW1]"
    },
    {
     "id": "NCBIProtein:ABQ71515.1",
     "label": "ferredoxin (plasmid) [Rhizorhabdus wittichii RW1]"
    },
    {
     "id": "NCBIProtein:ABQ71540.1",
     "label": "FAD-dependent pyridine nucleotide-disulphide oxidoreductase (plasmid) [Rhizorhabdus wittichii RW1]"
    },
    {
     "id": "NCBIProtein:ABQ71698.1",
     "label": "ferredoxin (plasmid) [Rhizorhabdus wittichii RW1]"
    },
    {
     "id": "NCBIProtein:AAN68769.1",
     "label": "benzoate 1,2-dioxygenase subunit alpha [Pseudomonas putida KT2440]"
    },
    {
     "id": "NCBIProtein:AAN68770.1",
     "label": "benzoate 1,2-dioxygenase subunit beta [Pseudomonas putida KT2440]"
    },
    {
     "id": "NCBIProtein:AAN68771.1",
     "label": "benzoate 1,2-dioxygenase electron transfer component [Pseudomonas putida KT2440]"
    },
    {
     "id": "NCBIProtein:ABP79350.1",
     "label": "benABC operon transcriptional activator BenR [Stutzerimonas stutzeri A1501]"
    }
   ],
   "reactions": [
    "MetaCyc:ENZRXN-15650",
    "MetaCyc:ENZRXN-3124",
    "MetaCyc:ENZRXN-15651",
    "MetaCyc:ENZRXN-3125",
    "MetaCyc:ENZRXN-12384",
    "RHEA:12634",
    "RHEA:11561"
   ]
  },
  {
   "id": "MetaCyc:PWY-5177",
   "label": "glutaryl-CoA degradation",
   "pathway_type": "organic-acid-degradation",
   "page": "records/MetaCyc_PWY-5177.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-5177.html",
   "taxa": [
    {
     "id": "NCBITaxon:303",
     "label": "Pseudomonas putida"
    },
    {
     "id": "NCBITaxon:1076",
     "label": "Rhodopseudomonas palustris"
    },
    {
     "id": "NCBITaxon:316277",
     "label": "Syntrophus aciditrophicus"
    },
    {
     "id": "NCBITaxon:43774",
     "label": "Syntrophus buswellii"
    },
    {
     "id": "NCBITaxon:43775",
     "label": "Syntrophus gentianae"
    },
    {
     "id": "NCBITaxon:59405",
     "label": "Thauera aromatica"
    },
    {
     "id": "NCBITaxon:44139",
     "label": "Thauera aromatica K172"
    },
    {
     "id": "NCBITaxon:59406",
     "label": "Aromatoleum evansii"
    }
   ],
   "proteins": [],
   "reactions": [
    "MetaCyc:ACETYL-COA-ACETYLTRANSFER-RXN",
    "MetaCyc:GLUTACONYL-COA-DECARBOXYLASE-RXN",
    "MetaCyc:GLUTARYL-COA-DEHYDROG-RXN",
    "MetaCyc:GLUTARYL-COA-DEHYDROGENASE-RXN",
    "MetaCyc:RXN-11662",
    "MetaCyc:RXN-11667"
   ]
  },
  {
   "id": "MetaCyc:PWY-5386",
   "label": "methylglyoxal degradation I",
   "pathway_type": "detoxification",
   "page": "records/MetaCyc_PWY-5386.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-5386.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0AC81",
     "label": "Lactoylglutathione lyase"
    },
    {
     "id": "UniProtKB:P0AC84",
     "label": "Hydroxyacylglutathione hydrolase GloB"
    },
    {
     "id": "UniProtKB:P06149",
     "label": "Quinone-dependent D-lactate dehydrogenase"
    }
   ],
   "reactions": [
    "RHEA:19071",
    "RHEA:25246",
    "RHEA:51469"
   ]
  },
  {
   "id": "MetaCyc:PWY-5415",
   "label": "catechol degradation I (meta-cleavage pathway)",
   "pathway_type": "aromatic-compound-degradation",
   "page": "records/MetaCyc_PWY-5415.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-5415.html",
   "taxa": [
    {
     "id": "NCBITaxon:555311",
     "label": "Saccharolobus solfataricus 98/2"
    },
    {
     "id": "NCBITaxon:108557",
     "label": "Alcaligenes sp. O-1"
    },
    {
     "id": "NCBITaxon:58226",
     "label": "Comamonas sp. JS765"
    },
    {
     "id": "NCBITaxon:106590",
     "label": "Cupriavidus necator"
    },
    {
     "id": "NCBITaxon:303",
     "label": "Pseudomonas putida"
    },
    {
     "id": "NCBITaxon:351746",
     "label": "Pseudomonas putida F1"
    },
    {
     "id": "NCBITaxon:79676",
     "label": "Pseudomonas sp. CF600"
    },
    {
     "id": "NCBITaxon:329",
     "label": "Ralstonia pickettii"
    }
   ],
   "proteins": [],
   "reactions": [
    "RHEA:17338",
    "MetaCyc:3.7.1.9-RXN",
    "RHEA:22582",
    "RHEA:22625",
    "RHEA:23289",
    "MetaCyc:ENZRXN-20170",
    "MetaCyc:ENZRXN-3581",
    "MetaCyc:ENZRXN-2181",
    "MetaCyc:ENZRXN-13530",
    "MetaCyc:MHPDHYDROL-ENZRXN",
    "MetaCyc:ENZRXN-20106",
    "MetaCyc:ENZRXN-16329",
    "MetaCyc:ENZRXN-11713",
    "MetaCyc:ENZRXN-11567",
    "MetaCyc:ENZRXN-648",
    "MetaCyc:ENZRXN-3583",
    "MetaCyc:MHPELY-ENZRXN",
    "MetaCyc:ENZRXN-13575",
    "MetaCyc:ENZRXN-11707",
    "MetaCyc:ENZRXN-11706",
    "MetaCyc:ENZRXN-11568",
    "MetaCyc:ENZRXN-3584",
    "MetaCyc:ENZRXN0-8531",
    "MetaCyc:MHPF-ENZRXN",
    "MetaCyc:ENZRXN-26159",
    "MetaCyc:ENZRXN-21046",
    "MetaCyc:ENZRXN-20828",
    "MetaCyc:ENZRXN-14164",
    "MetaCyc:ENZRXN-13574",
    "MetaCyc:ENZRXN-11711",
    "MetaCyc:ENZRXN-650",
    "MetaCyc:ENZRXN-142",
    "MetaCyc:ENZRXN-27171",
    "MetaCyc:ENZRXN-11552",
    "MetaCyc:ENZRXN-26223",
    "MetaCyc:P183-PWY",
    "MetaCyc:PWY-5162"
   ]
  },
  {
   "id": "MetaCyc:PWY-5417",
   "label": "catechol degradation III (ortho-cleavage pathway)",
   "pathway_type": "aromatic-compound-degradation",
   "page": "records/MetaCyc_PWY-5417.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-5417.html",
   "taxa": [
    {
     "id": "NCBITaxon:471",
     "label": "Acinetobacter calcoaceticus"
    },
    {
     "id": "NCBITaxon:358",
     "label": "Agrobacterium tumefaciens"
    },
    {
     "id": "NCBITaxon:106590",
     "label": "Cupriavidus necator"
    },
    {
     "id": "NCBITaxon:5554",
     "label": "Cutaneotrichosporon cutaneum"
    },
    {
     "id": "NCBITaxon:287",
     "label": "Pseudomonas aeruginosa"
    },
    {
     "id": "NCBITaxon:65741",
     "label": "Pseudomonas knackmussii"
    },
    {
     "id": "NCBITaxon:303",
     "label": "Pseudomonas putida"
    },
    {
     "id": "NCBITaxon:384",
     "label": "Rhizobium leguminosarum"
    },
    {
     "id": "NCBITaxon:386",
     "label": "Rhizobium leguminosarum bv. trifolii"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q52154",
     "label": "Pca regulon regulatory protein"
    }
   ],
   "reactions": [
    "RHEA:23853",
    "RHEA:30033",
    "RHEA:12349",
    "RHEA:10185",
    "RHEA:12049",
    "RHEA:19483",
    "MetaCyc:ENZRXN-3369",
    "MetaCyc:ENZRXN-31095",
    "MetaCyc:ENZRXN-3368",
    "MetaCyc:ENZRXN-16126",
    "MetaCyc:ENZRXN-16125",
    "MetaCyc:ENZRXN-3585",
    "MetaCyc:ENZRXN-21371",
    "MetaCyc:ENZRXN-16128",
    "MetaCyc:ENZRXN-16127",
    "MetaCyc:ENZRXN-15727",
    "MetaCyc:ENZRXN-3586",
    "MetaCyc:ENZRXN-16147",
    "MetaCyc:ENZRXN-16130",
    "MetaCyc:ENZRXN-3587",
    "MetaCyc:ENZRXN0-2607",
    "MetaCyc:ENZRXN-18274",
    "MetaCyc:ENZRXN-13636",
    "MetaCyc:ENZRXN-5295",
    "MetaCyc:ENZRXN-30626",
    "MetaCyc:ENZRXN-30674",
    "MetaCyc:CATECHOL-ORTHO-CLEAVAGE-PWY",
    "MetaCyc:PWY-2361",
    "MetaCyc:ENZRXN-15760",
    "MetaCyc:ENZRXN-15761"
   ]
  },
  {
   "id": "MetaCyc:PWY-5420",
   "label": "catechol degradation II (meta-cleavage pathway)",
   "pathway_type": "aromatic-compound-degradation",
   "page": "records/MetaCyc_PWY-5420.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-5420.html",
   "taxa": [
    {
     "id": "NCBITaxon:354",
     "label": "Azotobacter vinelandii"
    },
    {
     "id": "NCBITaxon:106590",
     "label": "Cupriavidus necator"
    },
    {
     "id": "NCBITaxon:303",
     "label": "Pseudomonas putida"
    },
    {
     "id": "NCBITaxon:79676",
     "label": "Pseudomonas sp. CF600"
    }
   ],
   "proteins": [],
   "reactions": [
    "RHEA:17338",
    "RHEA:34220",
    "RHEA:33432",
    "MetaCyc:4.1.1.77-RXN",
    "RHEA:22582",
    "RHEA:22625",
    "RHEA:23289",
    "MetaCyc:ENZRXN-20170",
    "MetaCyc:ENZRXN-3581",
    "MetaCyc:ENZRXN-2181",
    "MetaCyc:ENZRXN-20103",
    "MetaCyc:ENZRXN-16912",
    "MetaCyc:ENZRXN-3582",
    "MetaCyc:ENZRXN-16273",
    "MetaCyc:ENZRXN-20104",
    "MetaCyc:ENZRXN-16913",
    "MetaCyc:ENZRXN-13506",
    "MetaCyc:ENZRXN-16328",
    "MetaCyc:ENZRXN-20105",
    "MetaCyc:ENZRXN-16914",
    "MetaCyc:ENZRXN-16333",
    "MetaCyc:ENZRXN-14218",
    "MetaCyc:ENZRXN-13516",
    "MetaCyc:MHPDHYDROL-ENZRXN",
    "MetaCyc:ENZRXN-20106",
    "MetaCyc:ENZRXN-16329",
    "MetaCyc:ENZRXN-11713",
    "MetaCyc:ENZRXN-11567",
    "MetaCyc:ENZRXN-648",
    "MetaCyc:ENZRXN-3583",
    "MetaCyc:MHPELY-ENZRXN",
    "MetaCyc:ENZRXN-13575",
    "MetaCyc:ENZRXN-11707",
    "MetaCyc:ENZRXN-11706",
    "MetaCyc:ENZRXN-11568",
    "MetaCyc:ENZRXN-3584",
    "MetaCyc:ENZRXN0-8531",
    "MetaCyc:MHPF-ENZRXN",
    "MetaCyc:ENZRXN-26159",
    "MetaCyc:ENZRXN-21046",
    "MetaCyc:ENZRXN-20828",
    "MetaCyc:ENZRXN-14164",
    "MetaCyc:ENZRXN-13574",
    "MetaCyc:ENZRXN-11711",
    "MetaCyc:ENZRXN-650",
    "MetaCyc:ENZRXN-142",
    "MetaCyc:ENZRXN-27171",
    "MetaCyc:PWY-5419",
    "MetaCyc:PWY-5162"
   ]
  },
  {
   "id": "MetaCyc:PWY-5453",
   "label": "methylglyoxal degradation III",
   "pathway_type": "methylglyoxal-detoxification",
   "page": "records/MetaCyc_PWY-5453.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-5453.html",
   "taxa": [
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q46851",
     "label": "L-glyceraldehyde 3-phosphate reductase"
    },
    {
     "id": "UniProtKB:P0A9S5",
     "label": "Glycerol dehydrogenase"
    }
   ],
   "reactions": [
    "RHEA:27988",
    "RHEA:28668"
   ]
  },
  {
   "id": "MetaCyc:PWY-5509",
   "label": "adenosylcobalamin biosynthesis from adenosylcobinamide-GDP I",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/MetaCyc_PWY-5509.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-5509.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P36562",
     "label": "Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase"
    },
    {
     "id": "UniProtKB:P36561",
     "label": "Adenosylcobinamide-GDP ribazoletransferase"
    },
    {
     "id": "UniProtKB:P52086",
     "label": "Adenosylcobalamin/alpha-ribazole phosphatase"
    }
   ],
   "reactions": [
    "RHEA:11197",
    "RHEA:23561",
    "RHEA:30368"
   ]
  },
  {
   "id": "MetaCyc:PWY-5686",
   "label": "UMP biosynthesis I",
   "pathway_type": "nucleotide-biosynthesis",
   "page": "records/MetaCyc_PWY-5686.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-5686.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:6.3.5.5",
     "label": "carbamoyl-phosphate synthase (glutamine-hydrolysing)"
    },
    {
     "id": "EC:2.1.3.2",
     "label": "aspartate carbamoyltransferase"
    },
    {
     "id": "EC:3.5.2.3",
     "label": "dihydroorotase"
    },
    {
     "id": "EC:1.3.5.2",
     "label": "dihydroorotate dehydrogenase (quinone)"
    },
    {
     "id": "EC:2.4.2.10",
     "label": "orotate phosphoribosyltransferase"
    },
    {
     "id": "EC:4.1.1.23",
     "label": "orotidine-5'-phosphate decarboxylase"
    },
    {
     "id": "UniProtKB:P00968",
     "label": "Carbamoyl phosphate synthase large chain"
    },
    {
     "id": "UniProtKB:P05020",
     "label": "Dihydroorotase"
    },
    {
     "id": "UniProtKB:P08244",
     "label": "Orotidine 5'-phosphate decarboxylase"
    },
    {
     "id": "UniProtKB:P0A6F1",
     "label": "Carbamoyl phosphate synthase small chain"
    },
    {
     "id": "UniProtKB:P0A786",
     "label": "Aspartate carbamoyltransferase catalytic subunit"
    },
    {
     "id": "UniProtKB:P0A7E1",
     "label": "Dihydroorotate dehydrogenase (quinone)"
    },
    {
     "id": "UniProtKB:P0A7E3",
     "label": "Orotate phosphoribosyltransferase"
    }
   ],
   "reactions": [
    "RHEA:18634",
    "RHEA:20014",
    "RHEA:24298",
    "RHEA:30188",
    "RHEA:10382",
    "RHEA:11597"
   ]
  },
  {
   "id": "MetaCyc:PWY-5705",
   "label": "allantoin degradation to glyoxylate III",
   "pathway_type": "allantoin-degradation",
   "page": "records/MetaCyc_PWY-5705.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-5705.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P77671",
     "label": "Allantoinase"
    },
    {
     "id": "UniProtKB:P77425",
     "label": "Allantoate amidohydrolase"
    },
    {
     "id": "UniProtKB:P75713",
     "label": "(S)-ureidoglycine aminohydrolase"
    },
    {
     "id": "UniProtKB:P77731",
     "label": "Ureidoglycolate lyase"
    }
   ],
   "reactions": [
    "RHEA:17030",
    "RHEA:27486",
    "RHEA:25242",
    "RHEA:11305"
   ]
  },
  {
   "id": "MetaCyc:PWY-5744",
   "label": "glyoxylate assimilation",
   "pathway_type": "glyoxylate-assimilation-cycle",
   "page": "records/MetaCyc_PWY-5744.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-5744.html",
   "taxa": [
    {
     "id": "NCBITaxon:1108",
     "label": "Chloroflexus aurantiacus"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:A9W9X0",
     "label": "biotin carboxylase"
    },
    {
     "id": "UniProtKB:A9WBQ8",
     "label": "Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha"
    },
    {
     "id": "UniProtKB:A9WBQ9",
     "label": "Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta"
    },
    {
     "id": "UniProtKB:Q6QQP7",
     "label": "Malonyl-CoA reductase"
    },
    {
     "id": "UniProtKB:Q8VRG6",
     "label": "acetate--CoA ligase"
    },
    {
     "id": "UniProtKB:S5N020",
     "label": "Malyl-CoA/beta-methylmalyl-CoA/citramalyl-CoA lyase"
    },
    {
     "id": "UniProtKB:A9WC34",
     "label": "Beta-methylmalyl-CoA dehydratase"
    },
    {
     "id": "UniProtKB:A9WC36",
     "label": "2-methylfumaryl-CoA isomerase"
    },
    {
     "id": "UniProtKB:A9WC41",
     "label": "Mesaconyl-C(4)-CoA hydratase"
    }
   ],
   "reactions": [
    "RHEA:10750",
    "RHEA:13502",
    "RHEA:54729",
    "RHEA:26448",
    "RHEA:26440",
    "RHEA:26535",
    "RHEA:26519",
    "RHEA:26456",
    "RHEA:38261",
    "RHEA:38264",
    "RHEA:38268",
    "RHEA:38273",
    "RHEA:22613"
   ]
  },
  {
   "id": "MetaCyc:PWY-5789",
   "label": "3-hydroxypropanoate/4-hydroxybutanate cycle",
   "pathway_type": "autotrophic-carbon-fixation",
   "page": "records/MetaCyc_PWY-5789.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-5789.html",
   "taxa": [
    {
     "id": "NCBITaxon:399549",
     "label": "Metallosphaera sedula DSM 5348"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:A4YD22",
     "label": "Biotin carboxylase"
    },
    {
     "id": "UniProtKB:A4YD23",
     "label": "Biotin carboxyl carrier protein"
    },
    {
     "id": "UniProtKB:A4YGI1",
     "label": "Acetyl-CoA carboxylase carboxyltransferase subunit alpha / acetyl-CoA carboxylase carboxyltransferase subunit beta / propionyl-CoA carboxylase carboxyltransferase subunit"
    },
    {
     "id": "UniProtKB:A4YEN2",
     "label": "Malonyl CoA reductase (NADP)"
    },
    {
     "id": "UniProtKB:A4YI81",
     "label": "3-hydroxypropionate dehydrogenase (NADP(+))"
    },
    {
     "id": "UniProtKB:A4YGR1",
     "label": "3-hydroxypropionyl-coenzyme A synthetase"
    },
    {
     "id": "UniProtKB:A4YI89",
     "label": "3-hydroxypropionyl-coenzyme A dehydratase"
    },
    {
     "id": "UniProtKB:A4YGN2",
     "label": "Acryloyl-coenzyme A reductase"
    },
    {
     "id": "UniProtKB:A4YEG2",
     "label": "Methylmalonyl-CoA epimerase"
    },
    {
     "id": "UniProtKB:A4YEG1",
     "label": "Methylmalonyl-CoA mutase"
    },
    {
     "id": "UniProtKB:A4YIE3",
     "label": "Cobalamin B12-binding domain protein"
    },
    {
     "id": "UniProtKB:A4YGN0",
     "label": "Msed_1424 succinic semialdehyde reductase"
    },
    {
     "id": "UniProtKB:A4YDT1",
     "label": "4-hydroxybutyrate--CoA ligase 1"
    },
    {
     "id": "UniProtKB:A4YGC7",
     "label": "Vinylacetyl-CoA Delta-isomerase"
    },
    {
     "id": "UniProtKB:A4YGM9",
     "label": "3-hydroxyacyl-CoA dehydrogenase"
    },
    {
     "id": "UniProtKB:A4YEH9",
     "label": "Acetyl-CoA acetyltransferase"
    },
    {
     "id": "UniProtKB:A4YDR9",
     "label": "4-hydroxybutyrate--CoA ligase 2"
    },
    {
     "id": "UniProtKB:A4YDS4",
     "label": "3-hydroxyacyl-CoA dehydrogenase, NAD-binding protein"
    },
    {
     "id": "UniProtKB:A4YDL1",
     "label": "Enoyl-CoA hydratase/isomerase"
    },
    {
     "id": "UniProtKB:A4YDQ9",
     "label": "Short chain enoyl-CoA hydratase"
    },
    {
     "id": "UniProtKB:A4YDR4",
     "label": "3-hydroxyacyl-CoA dehydrogenase"
    }
   ],
   "reactions": [
    "RHEA:10750",
    "RHEA:11309",
    "RHEA:26448",
    "RHEA:26440",
    "RHEA:26535",
    "RHEA:26519",
    "RHEA:26456",
    "RHEA:23721",
    "RHEA:20555",
    "RHEA:22889",
    "RHEA:26452",
    "RHEA:26383",
    "RHEA:23129",
    "RHEA:26531",
    "RHEA:26560",
    "RHEA:30800",
    "RHEA:21038"
   ]
  },
  {
   "id": "MetaCyc:PWY-5838",
   "label": "superpathway of menaquinol-8 biosynthesis I",
   "pathway_type": "menaquinol-8-biosynthesis",
   "page": "records/MetaCyc_PWY-5838.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-5838.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P38051",
     "label": "Isochorismate synthase MenF"
    },
    {
     "id": "UniProtKB:P17109",
     "label": "2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase"
    },
    {
     "id": "UniProtKB:P37355",
     "label": "2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase"
    },
    {
     "id": "UniProtKB:P29208",
     "label": "o-succinylbenzoate synthase"
    },
    {
     "id": "UniProtKB:P37353",
     "label": "2-succinylbenzoate--CoA ligase"
    },
    {
     "id": "UniProtKB:P0ABU0",
     "label": "1,4-dihydroxy-2-naphthoyl-CoA synthase"
    },
    {
     "id": "UniProtKB:P77781",
     "label": "1,4-dihydroxy-2-naphthoyl-CoA hydrolase"
    },
    {
     "id": "UniProtKB:P0AD57",
     "label": "Octaprenyl diphosphate synthase"
    },
    {
     "id": "UniProtKB:P32166",
     "label": "1,4-dihydroxy-2-naphthoate octaprenyltransferase"
    },
    {
     "id": "UniProtKB:P0A887",
     "label": "Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE"
    }
   ],
   "reactions": [
    "RHEA:18986",
    "RHEA:25594",
    "RHEA:25598",
    "RHEA:10197",
    "RHEA:17010",
    "RHEA:26563",
    "RHEA:26310",
    "RHEA:27799",
    "RHEA:30100",
    "RHEA:30064"
   ]
  },
  {
   "id": "MetaCyc:PWY-5901",
   "label": "2,3-dihydroxybenzoate biosynthesis",
   "pathway_type": "2-3-dihydroxybenzoate-biosynthesis",
   "page": "records/MetaCyc_PWY-5901.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-5901.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0AEJ2",
     "label": "Isochorismate synthase EntC"
    },
    {
     "id": "UniProtKB:P15047",
     "label": "2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase"
    }
   ],
   "reactions": [
    "RHEA:18986",
    "RHEA:11113",
    "RHEA:23825"
   ]
  },
  {
   "id": "MetaCyc:PWY-5903",
   "label": "bacillibactin biosynthesis",
   "pathway_type": "bacillibactin-biosynthesis",
   "page": "records/MetaCyc_PWY-5903.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-5903.html",
   "taxa": [
    {
     "id": "NCBITaxon:2916802",
     "label": "Parageobacillus sp. KH3-4"
    }
   ],
   "proteins": [
    {
     "id": "NCBIProtein:BDG45611.1",
     "label": "2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase [Parageobacillus sp. KH3-4]"
    },
    {
     "id": "NCBIProtein:BDG45612.1",
     "label": "isochorismate synthase DhbC [Parageobacillus sp. KH3-4]"
    },
    {
     "id": "NCBIProtein:BDG45613.1",
     "label": "2,3-dihydroxybenzoate-AMP ligase [Parageobacillus sp. KH3-4]"
    },
    {
     "id": "NCBIProtein:BDG45614.1",
     "label": "isochorismatase [Parageobacillus sp. KH3-4]"
    },
    {
     "id": "NCBIProtein:BDG45615.1",
     "label": "dimodular nonribosomal peptide synthase [Parageobacillus sp. KH3-4]"
    },
    {
     "id": "NCBIProtein:BDG45617.1",
     "label": "4'-phosphopantetheinyl transferase [Parageobacillus sp. KH3-4]"
    }
   ],
   "reactions": [
    "MetaCyc:ISOCHORSYN-RXN",
    "MetaCyc:ISOCHORMAT-RXN",
    "MetaCyc:DHBDEHYD-RXN",
    "MetaCyc:DHBAMPLIG-RXN",
    "MetaCyc:RXN-19449",
    "MetaCyc:RXN-9376",
    "MetaCyc:RXN-19458",
    "MetaCyc:RXN-19460",
    "MetaCyc:RXN-9377",
    "MetaCyc:RXN-19452",
    "MetaCyc:RXN-19461",
    "MetaCyc:RXN-19462"
   ]
  },
  {
   "id": "MetaCyc:PWY-6019",
   "label": "pseudouridine degradation",
   "pathway_type": "pseudouridine-degradation",
   "page": "records/MetaCyc_PWY-6019.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6019.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P30235",
     "label": "Pseudouridine kinase"
    },
    {
     "id": "UniProtKB:P33025",
     "label": "Pseudouridine-5'-phosphate glycosidase"
    }
   ],
   "reactions": [
    "RHEA:22449",
    "RHEA:18339"
   ]
  },
  {
   "id": "MetaCyc:PWY-6048",
   "label": "methylthiopropanoate degradation I (cleavage)",
   "pathway_type": "organosulfur-catabolism",
   "page": "records/MetaCyc_PWY-6048.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6048.html",
   "taxa": [
    {
     "id": "NCBITaxon:246200",
     "label": "Ruegeria pomeroyi DSS-3"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q5LRT0",
     "label": "3-methylmercaptopropionyl-CoA ligase"
    },
    {
     "id": "UniProtKB:Q5LLW7",
     "label": "3-methylmercaptopropionyl-CoA dehydrogenase"
    },
    {
     "id": "UniProtKB:Q5LLW6",
     "label": "Methylthioacryloyl-CoA hydratase"
    }
   ],
   "reactions": [
    "RHEA:43053",
    "RHEA:52613",
    "RHEA:45145"
   ]
  },
  {
   "id": "MetaCyc:PWY-6121",
   "label": "5-aminoimidazole ribonucleotide biosynthesis I",
   "pathway_type": "nucleotide-biosynthesis",
   "page": "records/MetaCyc_PWY-6121.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6121.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.4.2.14",
     "label": "amidophosphoribosyltransferase"
    },
    {
     "id": "EC:6.3.4.13",
     "label": "phosphoribosylamine-glycine ligase"
    },
    {
     "id": "EC:2.1.2.2",
     "label": "phosphoribosylglycinamide formyltransferase"
    },
    {
     "id": "EC:6.3.5.3",
     "label": "phosphoribosylformylglycinamidine synthase"
    },
    {
     "id": "EC:6.3.3.1",
     "label": "phosphoribosylformylglycinamidine cyclo-ligase"
    },
    {
     "id": "UniProtKB:P08178",
     "label": "Phosphoribosylformylglycinamidine cyclo-ligase"
    },
    {
     "id": "UniProtKB:P08179",
     "label": "Phosphoribosylglycinamide formyltransferase"
    },
    {
     "id": "UniProtKB:P0AG16",
     "label": "Amidophosphoribosyltransferase"
    },
    {
     "id": "UniProtKB:P15254",
     "label": "Phosphoribosylformylglycinamidine synthase"
    },
    {
     "id": "UniProtKB:P15640",
     "label": "Phosphoribosylamine--glycine ligase"
    }
   ],
   "reactions": [
    "RHEA:14907",
    "RHEA:17454",
    "RHEA:15054",
    "RHEA:17130",
    "RHEA:23033"
   ]
  },
  {
   "id": "MetaCyc:PWY-6122",
   "label": "5-aminoimidazole ribonucleotide biosynthesis II",
   "pathway_type": "nucleotide-biosynthesis",
   "page": "records/MetaCyc_PWY-6122.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6122.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.4.2.14",
     "label": "amidophosphoribosyltransferase"
    },
    {
     "id": "EC:6.3.4.13",
     "label": "phosphoribosylamine-glycine ligase"
    },
    {
     "id": "EC:6.3.1.21",
     "label": "phosphoribosylglycinamide formyltransferase 2"
    },
    {
     "id": "EC:6.3.5.3",
     "label": "phosphoribosylformylglycinamidine synthase"
    },
    {
     "id": "EC:6.3.3.1",
     "label": "phosphoribosylformylglycinamidine cyclo-ligase"
    },
    {
     "id": "UniProtKB:P08178",
     "label": "Phosphoribosylformylglycinamidine cyclo-ligase"
    },
    {
     "id": "UniProtKB:P0AG16",
     "label": "Amidophosphoribosyltransferase"
    },
    {
     "id": "UniProtKB:P15254",
     "label": "Phosphoribosylformylglycinamidine synthase"
    },
    {
     "id": "UniProtKB:P15640",
     "label": "Phosphoribosylamine--glycine ligase"
    },
    {
     "id": "UniProtKB:P33221",
     "label": "Formate-dependent phosphoribosylglycinamide formyltransferase"
    }
   ],
   "reactions": [
    "RHEA:14907",
    "RHEA:17454",
    "RHEA:24830",
    "RHEA:17130",
    "RHEA:23033"
   ]
  },
  {
   "id": "MetaCyc:PWY-6123",
   "label": "inosine-5'-phosphate biosynthesis I",
   "pathway_type": "nucleotide-biosynthesis",
   "page": "records/MetaCyc_PWY-6123.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6123.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:6.3.4.18",
     "label": "5-(carboxyamino)imidazole ribonucleotide synthase"
    },
    {
     "id": "EC:5.4.99.18",
     "label": "5-(carboxyamino)imidazole ribonucleotide mutase"
    },
    {
     "id": "EC:6.3.2.6",
     "label": "phosphoribosylaminoimidazolesuccinocarboxamide synthase"
    },
    {
     "id": "EC:4.3.2.2",
     "label": "adenylosuccinate lyase"
    },
    {
     "id": "EC:2.1.2.3",
     "label": "phosphoribosylaminoimidazolecarboxamide formyltransferase"
    },
    {
     "id": "EC:3.5.4.10",
     "label": "IMP cyclohydrolase"
    },
    {
     "id": "UniProtKB:P09029",
     "label": "N5-carboxyaminoimidazole ribonucleotide synthase"
    },
    {
     "id": "UniProtKB:P0A7D7",
     "label": "Phosphoribosylaminoimidazole-succinocarboxamide synthase"
    },
    {
     "id": "UniProtKB:P0AB89",
     "label": "Adenylosuccinate lyase"
    },
    {
     "id": "UniProtKB:P0AG18",
     "label": "N5-carboxyaminoimidazole ribonucleotide mutase"
    },
    {
     "id": "UniProtKB:P15639",
     "label": "Bifunctional purine biosynthesis protein PurH"
    }
   ],
   "reactions": [
    "RHEA:19318",
    "RHEA:13194",
    "RHEA:22629",
    "RHEA:23921",
    "RHEA:22193",
    "RHEA:18447"
   ]
  },
  {
   "id": "MetaCyc:PWY-6124",
   "label": "inosine-5'-phosphate biosynthesis II",
   "pathway_type": "nucleotide-biosynthesis",
   "page": "records/MetaCyc_PWY-6124.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6124.html",
   "taxa": [
    {
     "id": "NCBITaxon:158",
     "label": "Treponema denticola"
    }
   ],
   "proteins": [
    {
     "id": "EC:4.1.1.21",
     "label": "phosphoribosylaminoimidazole carboxylase"
    },
    {
     "id": "EC:6.3.2.6",
     "label": "phosphoribosylaminoimidazolesuccinocarboxamide synthase"
    },
    {
     "id": "EC:4.3.2.2",
     "label": "adenylosuccinate lyase"
    },
    {
     "id": "EC:2.1.2.3",
     "label": "phosphoribosylaminoimidazolecarboxamide formyltransferase"
    },
    {
     "id": "EC:3.5.4.10",
     "label": "IMP cyclohydrolase"
    },
    {
     "id": "UniProtKB:Q73PV9",
     "label": "Phosphoribosylaminoimidazole carboxylase"
    }
   ],
   "reactions": [
    "RHEA:22629",
    "RHEA:23921",
    "RHEA:22193",
    "RHEA:18447",
    "RHEA:10794"
   ]
  },
  {
   "id": "MetaCyc:PWY-6151",
   "label": "S-adenosyl-L-methionine cycle I",
   "pathway_type": "amino-acid-metabolism",
   "page": "records/MetaCyc_PWY-6151.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6151.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0A817",
     "label": "S-adenosylmethionine synthase"
    },
    {
     "id": "UniProtKB:P0AF12",
     "label": "5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase"
    },
    {
     "id": "UniProtKB:P45578",
     "label": "S-ribosylhomocysteine lyase"
    },
    {
     "id": "UniProtKB:P13009",
     "label": "Methionine synthase"
    },
    {
     "id": "UniProtKB:P25665",
     "label": "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase"
    }
   ],
   "reactions": [
    "RHEA:21081",
    "MetaCyc:RXN-7605",
    "RHEA:17806",
    "RHEA:17754",
    "RHEA:21197",
    "RHEA:11173"
   ]
  },
  {
   "id": "MetaCyc:PWY-6223",
   "label": "gentisate degradation I",
   "pathway_type": "gentisate-degradation",
   "page": "records/MetaCyc_PWY-6223.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6223.html",
   "taxa": [
    {
     "id": "NCBITaxon:70356",
     "label": "Ralstonia sp. U2"
    },
    {
     "id": "NCBITaxon:196627",
     "label": "Corynebacterium glutamicum ATCC 13032"
    },
    {
     "id": "NCBITaxon:980079",
     "label": "Paenibacillus sp. NyZ101"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:O86041",
     "label": "Gentisate 1,2-dioxygenase"
    },
    {
     "id": "UniProtKB:O86043",
     "label": "Maleylpyruvate isomerase"
    },
    {
     "id": "UniProtKB:O86042",
     "label": "Fumarylpyruvate hydrolase"
    },
    {
     "id": "UniProtKB:H6TG59",
     "label": "Cysteine dependent-maleylpyruvate isomerase"
    }
   ],
   "reactions": [
    "RHEA:18238",
    "RHEA:17394",
    "RHEA:26169"
   ]
  },
  {
   "id": "MetaCyc:PWY-6289",
   "label": "petrobactin biosynthesis",
   "pathway_type": "petrobactin-biosynthesis",
   "page": "records/MetaCyc_PWY-6289.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6289.html",
   "taxa": [
    {
     "id": "NCBITaxon:260799",
     "label": "Bacillus anthracis str. Sterne"
    }
   ],
   "proteins": [
    {
     "id": "NCBIProtein:AAT54153.1",
     "label": "siderophore biosynthesis protein, putative [Bacillus anthracis str. Sterne]"
    },
    {
     "id": "NCBIProtein:AAT54154.1",
     "label": "siderophore biosynthesis protein, putative [Bacillus anthracis str. Sterne]"
    },
    {
     "id": "NCBIProtein:AAT54155.1",
     "label": "AMP-binding protein [Bacillus anthracis str. Sterne]"
    },
    {
     "id": "NCBIProtein:AAT54156.1",
     "label": "hypothetical protein BAS1841 [Bacillus anthracis str. Sterne]"
    },
    {
     "id": "NCBIProtein:AAT54157.1",
     "label": "hypothetical protein BAS1842 [Bacillus anthracis str. Sterne]"
    },
    {
     "id": "NCBIProtein:AAT54158.1",
     "label": "conserved hypothetical protein [Bacillus anthracis str. Sterne]"
    }
   ],
   "reactions": [
    "RHEA:48405",
    "RHEA:24849",
    "RHEA:62469",
    "RHEA:62477",
    "RHEA:63809",
    "RHEA:63813",
    "RHEA:64029",
    "RHEA:63817",
    "RHEA:64025",
    "MetaCyc:RXN-10679"
   ]
  },
  {
   "id": "MetaCyc:PWY-6336",
   "label": "protocatechuate degradation III (para-cleavage pathway)",
   "pathway_type": "aromatic-compound-catabolism",
   "page": "records/MetaCyc_PWY-6336.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6336.html",
   "taxa": [
    {
     "id": "NCBITaxon:649508",
     "label": "Paenibacillus sp. JJ-1b"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:C4TP01",
     "label": "Protocatechuate 2,3-dioxygenase"
    },
    {
     "id": "UniProtKB:C4TP08",
     "label": "5-carboxy-2-hydroxymuconate-6-semialdehyde decarboxylase"
    },
    {
     "id": "UniProtKB:C4TP02",
     "label": "2-hydroxymuconate-6-semialdehyde dehydrogenase"
    },
    {
     "id": "UniProtKB:C4TP07",
     "label": "Tautomerase"
    },
    {
     "id": "UniProtKB:C4TP06",
     "label": "4-oxalocrotonate decarboxylase"
    }
   ],
   "reactions": [
    "MetaCyc:RXN-10882",
    "MetaCyc:RXN-10883",
    "RHEA:34220",
    "RHEA:33432",
    "MetaCyc:4.1.1.77-RXN",
    "MetaCyc:PWY-5162"
   ]
  },
  {
   "id": "MetaCyc:PWY-6376",
   "label": "desferrioxamine B biosynthesis",
   "pathway_type": "desferrioxamine-b-biosynthesis",
   "page": "records/MetaCyc_PWY-6376.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6376.html",
   "taxa": [
    {
     "id": "NCBITaxon:100226",
     "label": "Streptomyces coelicolor A3(2)"
    }
   ],
   "proteins": [],
   "reactions": [
    "MetaCyc:LYSDECARBOX-RXN",
    "MetaCyc:RXN-10995",
    "MetaCyc:RXN-10996",
    "MetaCyc:RXN-10999",
    "MetaCyc:RXN-11001"
   ]
  },
  {
   "id": "MetaCyc:PWY-6416",
   "label": "quinate degradation II",
   "pathway_type": "aromatic-compound-catabolism",
   "page": "records/MetaCyc_PWY-6416.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6416.html",
   "taxa": [
    {
     "id": "NCBITaxon:340322",
     "label": "Corynebacterium glutamicum R"
    },
    {
     "id": "NCBITaxon:1718",
     "label": "Corynebacterium glutamicum"
    },
    {
     "id": "NCBITaxon:1814",
     "label": "Amycolatopsis methanolica"
    },
    {
     "id": "NCBITaxon:162425",
     "label": "Aspergillus nidulans"
    },
    {
     "id": "NCBITaxon:5141",
     "label": "Neurospora crassa"
    }
   ],
   "proteins": [
    {
     "id": "Entrez:3875756",
     "label": "qa-1F"
    },
    {
     "id": "Entrez:3875772",
     "label": "qa-2"
    },
    {
     "id": "Entrez:3875774",
     "label": "qa-3"
    },
    {
     "id": "NCBIProtein:ANU32720.1",
     "label": "4-hydroxyphenylpyruvate dioxygenase [Corynebacterium glutamicum]"
    },
    {
     "id": "NCBIProtein:BAF53458.1",
     "label": "hypothetical protein cgR_0491 [Corynebacterium glutamicum R]"
    },
    {
     "id": "NCBIProtein:BAF53460.1",
     "label": "hypothetical protein cgR_0493 [Corynebacterium glutamicum R]"
    },
    {
     "id": "UniProtKB:A4QB64",
     "label": "Corynebacterium glutamicum R QsuC"
    },
    {
     "id": "UniProtKB:A4QB65",
     "label": "Corynebacterium glutamicum R QsuD"
    },
    {
     "id": "UniProtKB:P05147",
     "label": "Aspergillus nidulans QutE"
    },
    {
     "id": "UniProtKB:P05195",
     "label": "Neurospora crassa Qa2"
    },
    {
     "id": "UniProtKB:P07046",
     "label": "Neurospora crassa Qa4"
    },
    {
     "id": "UniProtKB:P10563",
     "label": "Aspergillus nidulans QutA"
    },
    {
     "id": "UniProtKB:P11635",
     "label": "Neurospora crassa Qa3"
    },
    {
     "id": "UniProtKB:P11636",
     "label": "Neurospora crassa qa-y quinate permease"
    },
    {
     "id": "UniProtKB:P11637",
     "label": "Neurospora crassa Qa1S"
    },
    {
     "id": "UniProtKB:P11638",
     "label": "Neurospora crassa Qa1F"
    },
    {
     "id": "UniProtKB:P15325",
     "label": "Aspergillus nidulans QutD"
    },
    {
     "id": "UniProtKB:P25415",
     "label": "Aspergillus nidulans QutB"
    },
    {
     "id": "UniProtKB:P46380",
     "label": "Amycolatopsis methanolica AroQ subunit"
    },
    {
     "id": "UniProtKB:Q00774",
     "label": "Aspergillus nidulans QutC"
    },
    {
     "id": "UniProtKB:Q00784",
     "label": "Aspergillus nidulans QutR"
    },
    {
     "id": "UniProtKB:Q9X5C9",
     "label": "Corynebacterium glutamicum ATCC 13032 QsuD subunit"
    }
   ],
   "reactions": [
    "MetaCyc:QUINATE-5-DEHYDROGENASE-RXN",
    "RHEA:21099",
    "RHEA:24849",
    "RHEA:22365"
   ]
  },
  {
   "id": "MetaCyc:PWY-6419",
   "label": "shikimate degradation II",
   "pathway_type": "aromatic-compound-catabolism",
   "page": "records/MetaCyc_PWY-6419.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6419.html",
   "taxa": [
    {
     "id": "NCBITaxon:1718",
     "label": "Corynebacterium glutamicum"
    },
    {
     "id": "NCBITaxon:340322",
     "label": "Corynebacterium glutamicum R"
    }
   ],
   "proteins": [
    {
     "id": "NCBIProtein:ANU32720.1",
     "label": "4-hydroxyphenylpyruvate dioxygenase [Corynebacterium glutamicum]"
    },
    {
     "id": "NCBIProtein:BAF53458.1",
     "label": "hypothetical protein cgR_0491 [Corynebacterium glutamicum R]"
    },
    {
     "id": "NCBIProtein:BAF53460.1",
     "label": "hypothetical protein cgR_0493 [Corynebacterium glutamicum R]"
    },
    {
     "id": "UniProtKB:A4QB65",
     "label": "Quinate/shikimate dehydrogenase (NAD(+))"
    },
    {
     "id": "UniProtKB:A4QH18",
     "label": "Shikimate transporter"
    },
    {
     "id": "UniProtKB:A4QH19",
     "label": "HTH-type transcriptional regulator ShiR"
    },
    {
     "id": "UniProtKB:Q9X5C9",
     "label": "Quinate/shikimate dehydrogenase (NAD(+))"
    }
   ],
   "reactions": [
    "RHEA:17742",
    "RHEA:24849",
    "GO:0019618"
   ]
  },
  {
   "id": "MetaCyc:PWY-6534",
   "label": "phenylethylamine degradation II",
   "pathway_type": "aromatic-amine-degradation",
   "page": "records/MetaCyc_PWY-6534.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6534.html",
   "taxa": [
    {
     "id": "NCBITaxon:303",
     "label": "Pseudomonas putida"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:B1N7H2",
     "label": "PeaA"
    },
    {
     "id": "UniProtKB:B1N7G9",
     "label": "PeaD"
    },
    {
     "id": "UniProtKB:B1N7H0",
     "label": "PeaC"
    },
    {
     "id": "UniProtKB:B1N7H1",
     "label": "PeaB"
    },
    {
     "id": "UniProtKB:B1N7H3",
     "label": "PeaE"
    }
   ],
   "reactions": [
    "RHEA:36724",
    "RHEA:21393"
   ]
  },
  {
   "id": "MetaCyc:PWY-6543",
   "label": "4-aminobenzoate biosynthesis I",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/MetaCyc_PWY-6543.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6543.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.6.1.85",
     "label": "aminodeoxychorismate synthase"
    },
    {
     "id": "EC:4.1.3.38",
     "label": "aminodeoxychorismate lyase"
    },
    {
     "id": "UniProtKB:P00903",
     "label": "Aminodeoxychorismate synthase component 2"
    },
    {
     "id": "UniProtKB:P05041",
     "label": "Aminodeoxychorismate synthase component 1"
    },
    {
     "id": "UniProtKB:P28305",
     "label": "Aminodeoxychorismate lyase"
    }
   ],
   "reactions": [
    "RHEA:11673",
    "RHEA:16202"
   ]
  },
  {
   "id": "MetaCyc:PWY-6579",
   "label": "superpathway of guanine and guanosine salvage",
   "pathway_type": "purine-nucleotide-salvage",
   "page": "records/MetaCyc_PWY-6579.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6579.html",
   "taxa": [
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0AEW6",
     "label": "Guanosine-inosine kinase"
    },
    {
     "id": "UniProtKB:P0ABP8",
     "label": "Purine nucleoside phosphorylase DeoD-type"
    },
    {
     "id": "UniProtKB:P0A9M5",
     "label": "Xanthine-guanine phosphoribosyltransferase"
    }
   ],
   "reactions": [
    "RHEA:27711",
    "RHEA:13234",
    "RHEA:25426"
   ]
  },
  {
   "id": "MetaCyc:PWY-6609",
   "label": "adenine and adenosine salvage III",
   "pathway_type": "purine-nucleotide-salvage",
   "page": "records/MetaCyc_PWY-6609.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6609.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P22333",
     "label": "Adenosine deaminase"
    },
    {
     "id": "UniProtKB:P0ABP8",
     "label": "Purine nucleoside phosphorylase DeoD-type"
    },
    {
     "id": "UniProtKB:P0A9M2",
     "label": "Hypoxanthine phosphoribosyltransferase"
    },
    {
     "id": "UniProtKB:P0A9M5",
     "label": "Xanthine-guanine phosphoribosyltransferase"
    }
   ],
   "reactions": [
    "RHEA:27644",
    "RHEA:24409",
    "RHEA:27647",
    "RHEA:17975"
   ]
  },
  {
   "id": "MetaCyc:PWY-6823",
   "label": "molybdenum cofactor biosynthesis",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/MetaCyc_PWY-6823.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6823.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P30745",
     "label": "GTP 3',8-cyclase"
    },
    {
     "id": "UniProtKB:P0A738",
     "label": "Cyclic pyranopterin monophosphate synthase"
    },
    {
     "id": "UniProtKB:P30748",
     "label": "Molybdopterin synthase sulfur carrier subunit"
    },
    {
     "id": "UniProtKB:P30749",
     "label": "Molybdopterin synthase catalytic subunit"
    },
    {
     "id": "UniProtKB:P12281",
     "label": "Molybdopterin molybdenumtransferase"
    },
    {
     "id": "UniProtKB:P12282",
     "label": "Molybdopterin-synthase adenylyltransferase"
    },
    {
     "id": "UniProtKB:P0AF03",
     "label": "Molybdopterin adenylyltransferase"
    },
    {
     "id": "UniProtKB:P0A6B7",
     "label": "Cysteine desulfurase IscS"
    },
    {
     "id": "UniProtKB:P78067",
     "label": "Thiosulfate sulfurtransferase YnjE"
    }
   ],
   "reactions": [
    "RHEA:49577",
    "RHEA:49581",
    "RHEA:17458",
    "RHEA:43617",
    "RHEA:48613",
    "RHEA:26334",
    "RHEA:31332",
    "RHEA:35048"
   ]
  },
  {
   "id": "MetaCyc:PWY-6993",
   "label": "nicotine degradation II (pyrrolidine pathway)",
   "pathway_type": "nicotine-degradation",
   "page": "records/MetaCyc_PWY-6993.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-6993.html",
   "taxa": [
    {
     "id": "NCBITaxon:1042876",
     "label": "Pseudomonas putida S16"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:F8G0P2",
     "label": "Nicotine dehydrogenase"
    },
    {
     "id": "UniProtKB:F8G0P1",
     "label": "Pseudooxynicotine dehydrogenase"
    },
    {
     "id": "UniProtKB:F8G0M4",
     "label": "6-hydroxy-3-succinoylpyridine 3-monooxygenase HspB"
    },
    {
     "id": "UniProtKB:F8G0M3",
     "label": "Maleate isomerase"
    },
    {
     "id": "UniProtKB:F8G0M2",
     "label": "N-formylmaleamate deformylase"
    },
    {
     "id": "UniProtKB:F8G0M1",
     "label": "2,5-DHP dioxygenase"
    },
    {
     "id": "UniProtKB:F8G0M0",
     "label": "Maleamate amidase"
    },
    {
     "id": "UniProtKB:A0A0E3ELC2",
     "label": "C-type cytochrome"
    }
   ],
   "reactions": [
    "RHEA:73656",
    "RHEA:75416",
    "RHEA:75352",
    "RHEA:34216",
    "MetaCyc:RXN-13082",
    "RHEA:33928",
    "RHEA:27523",
    "RHEA:30844",
    "RHEA:27386",
    "RHEA:13170",
    "RHEA:13214"
   ]
  },
  {
   "id": "MetaCyc:PWY-7181",
   "label": "pyrimidine deoxyribonucleosides degradation",
   "pathway_type": "pyrimidine-deoxyribonucleoside-catabolism",
   "page": "records/MetaCyc_PWY-7181.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-7181.html",
   "taxa": [
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0ABF6",
     "label": "Cytidine deaminase"
    },
    {
     "id": "UniProtKB:P07650",
     "label": "Thymidine phosphorylase"
    }
   ],
   "reactions": [
    "RHEA:13434",
    "RHEA:22825",
    "RHEA:16038"
   ]
  },
  {
   "id": "MetaCyc:PWY-7255",
   "label": "ergothioneine biosynthesis I (bacteria)",
   "pathway_type": "ergothioneine-biosynthesis",
   "page": "records/MetaCyc_PWY-7255.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-7255.html",
   "taxa": [
    {
     "id": "NCBITaxon:246196",
     "label": "Mycolicibacterium smegmatis MC2 155"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:A0R5N1",
     "label": "Glutamate--cysteine ligase EgtA"
    },
    {
     "id": "UniProtKB:A0R5M8",
     "label": "Histidine N-alpha-methyltransferase"
    },
    {
     "id": "UniProtKB:A0R5N0",
     "label": "Hercynine oxygenase"
    },
    {
     "id": "UniProtKB:A0R5M9",
     "label": "Gamma-glutamyl-hercynylcysteine sulfoxide hydrolase"
    },
    {
     "id": "UniProtKB:A0R5M7",
     "label": "Hercynylcysteine sulfoxide lyase"
    }
   ],
   "reactions": [
    "RHEA:13286",
    "RHEA:38472",
    "RHEA:42673",
    "RHEA:42685",
    "RHEA:52781",
    "MetaCyc:RXN-18089",
    "MetaCyc:RXN-15804"
   ]
  },
  {
   "id": "MetaCyc:PWY-7446",
   "label": "sulfoquinovose degradation I",
   "pathway_type": "sulfo-EMP-catabolism",
   "page": "records/MetaCyc_PWY-7446.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-7446.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P32140",
     "label": "Sulfoquinovose isomerase"
    },
    {
     "id": "UniProtKB:P32141",
     "label": "Sulfofructosephosphate aldolase"
    },
    {
     "id": "UniProtKB:P0A9V8",
     "label": "3-sulfolactaldehyde reductase"
    },
    {
     "id": "UniProtKB:P32143",
     "label": "Sulfofructose kinase"
    },
    {
     "id": "UniProtKB:P32144",
     "label": "HTH-type transcriptional repressor CsqR"
    }
   ],
   "reactions": [
    "RHEA:40440",
    "RHEA:40444",
    "RHEA:40516",
    "RHEA:40513"
   ]
  },
  {
   "id": "MetaCyc:PWY-7545",
   "label": "pyruvate to cytochrome bd oxidase electron transfer",
   "pathway_type": "energy metabolism",
   "page": "records/MetaCyc_PWY-7545.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-7545.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P07003",
     "label": "Pyruvate dehydrogenase [ubiquinone]"
    },
    {
     "id": "UniProtKB:P0ABJ9",
     "label": "Cytochrome bd-I ubiquinol oxidase subunit 1"
    },
    {
     "id": "UniProtKB:P0ABK2",
     "label": "Cytochrome bd-I ubiquinol oxidase subunit 2"
    },
    {
     "id": "UniProtKB:P56100",
     "label": "Cytochrome bd-I ubiquinol oxidase subunit X"
    },
    {
     "id": "UniProtKB:A5A618",
     "label": "Uncharacterized protein YnhF"
    }
   ],
   "reactions": [
    "MetaCyc:RXN-11496",
    "MetaCyc:RXN0-5266",
    "RHEA:27406",
    "RHEA:40528"
   ]
  },
  {
   "id": "MetaCyc:PWY-7722",
   "label": "sulfoquinovose degradation II",
   "pathway_type": "sulfo-ED-catabolism",
   "page": "records/MetaCyc_PWY-7722.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-7722.html",
   "taxa": [
    {
     "id": "NCBITaxon:303",
     "label": "Pseudomonas putida"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0DOV5",
     "label": "Sulfoquinovose 1-dehydrogenase"
    },
    {
     "id": "UniProtKB:P0DOV6",
     "label": "6-deoxy-6-sulfogluconolactonase"
    },
    {
     "id": "UniProtKB:P0DOV7",
     "label": "6-deoxy-6-sulfo-D-gluconate dehydratase"
    },
    {
     "id": "UniProtKB:P0DOV8",
     "label": "2-dehydro-3,6-dideoxy-6-sulfogluconate aldolase"
    },
    {
     "id": "UniProtKB:P0DOV9",
     "label": "3-sulfolactaldehyde dehydrogenase"
    }
   ],
   "reactions": [
    "RHEA:47897",
    "RHEA:47909",
    "RHEA:47913",
    "RHEA:47925",
    "RHEA:47929",
    "RHEA:47933"
   ]
  },
  {
   "id": "MetaCyc:PWY-7971",
   "label": "adenosylcobinamide-GDP salvage from cobinamide I",
   "pathway_type": "corrinoid-salvage-and-activation",
   "page": "records/MetaCyc_PWY-7971.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-7971.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0A9H5",
     "label": "Corrinoid adenosyltransferase"
    },
    {
     "id": "UniProtKB:P0AE76",
     "label": "Bifunctional adenosylcobalamin biosynthesis protein CobU"
    }
   ],
   "reactions": [
    "RHEA:57689",
    "RHEA:57693",
    "RHEA:57697",
    "RHEA:15770",
    "RHEA:22713"
   ]
  },
  {
   "id": "MetaCyc:PWY-7990",
   "label": "staphyloferrin A biosynthesis",
   "pathway_type": "staphyloferrin-a-biosynthesis",
   "page": "records/MetaCyc_PWY-7990.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-7990.html",
   "taxa": [
    {
     "id": "NCBITaxon:426430",
     "label": "Staphylococcus aureus subsp. aureus str. Newman"
    }
   ],
   "proteins": [
    {
     "id": "NCBIProtein:BAF68351.1",
     "label": "NWMN_2079"
    },
    {
     "id": "NCBIProtein:BAF68352.1",
     "label": "NWMN_2080"
    },
    {
     "id": "NCBIProtein:BAF68354.1",
     "label": "NWMN_2082"
    }
   ],
   "reactions": [
    "RHEA:11585",
    "RHEA:59137",
    "RHEA:59141"
   ]
  },
  {
   "id": "MetaCyc:PWY-8008",
   "label": "staphyloferrin B biosynthesis",
   "pathway_type": "staphyloferrin-b-biosynthesis",
   "page": "records/MetaCyc_PWY-8008.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-8008.html",
   "taxa": [
    {
     "id": "NCBITaxon:426430",
     "label": "Staphylococcus aureus subsp. aureus str. Newman"
    },
    {
     "id": "NCBITaxon:93061",
     "label": "Staphylococcus aureus subsp. aureus NCTC 8325"
    }
   ],
   "proteins": [
    {
     "id": "NCBIProtein:BAF66340.1",
     "label": "NWMN_0068"
    },
    {
     "id": "NCBIProtein:BAF66332.1",
     "label": "NWMN_0060"
    },
    {
     "id": "NCBIProtein:BAF66333.1",
     "label": "NWMN_0061"
    },
    {
     "id": "NCBIProtein:BAF66336.1",
     "label": "NWMN_0064"
    },
    {
     "id": "NCBIProtein:BAF66339.1",
     "label": "NWMN_0067"
    },
    {
     "id": "NCBIProtein:BAF66337.1",
     "label": "NWMN_0065"
    },
    {
     "id": "NCBIProtein:BAF66334.1",
     "label": "NWMN_0062"
    },
    {
     "id": "UniProtKB:Q2G1M5",
     "label": "ATP-dependent L-serine kinase SbnI"
    },
    {
     "id": "UniProtKB:Q2G1N2",
     "label": "N-((2S)-2-amino-2-carboxyethyl)-L-glutamate dehydrogenase"
    }
   ],
   "reactions": [
    "RHEA:59113",
    "RHEA:52385",
    "RHEA:51929",
    "RHEA:59125",
    "RHEA:59121",
    "RHEA:59129",
    "RHEA:59133"
   ]
  },
  {
   "id": "MetaCyc:PWY-8130",
   "label": "5'-deoxyadenosine degradation I",
   "pathway_type": "metabolic",
   "page": "records/MetaCyc_PWY-8130.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-8130.html",
   "taxa": [
    {
     "id": "NCBITaxon:269796",
     "label": "Rhodospirillum rubrum ATCC 11170"
    },
    {
     "id": "NCBITaxon:1085",
     "label": "Rhodospirillum rubrum"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q2RXI0",
     "label": "Methylthioribose-1-phosphate isomerase"
    },
    {
     "id": "UniProtKB:Q2RXI1",
     "label": "5-methylthioribulose-1-phosphate/5-deoxyribulose-1-phosphate aldolase"
    }
   ],
   "reactions": [
    "MetaCyc:RXN-14304",
    "MetaCyc:RXN-21315",
    "MetaCyc:RXN-21316"
   ]
  },
  {
   "id": "MetaCyc:PWY-8131",
   "label": "5'-deoxyadenosine degradation II",
   "pathway_type": "metabolic",
   "page": "records/MetaCyc_PWY-8131.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-8131.html",
   "taxa": [
    {
     "id": "NCBITaxon:1322345",
     "label": "Escherichia coli ATCC 25922"
    },
    {
     "id": "NCBITaxon:1279365",
     "label": "Bacillus thuringiensis serovar kurstaki str. HD73"
    },
    {
     "id": "NCBITaxon:269796",
     "label": "Rhodospirillum rubrum ATCC 11170"
    },
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0AF12",
     "label": "5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase"
    },
    {
     "id": "UniProtKB:P0DTQ2",
     "label": "5-deoxyribose kinase"
    },
    {
     "id": "UniProtKB:P0DTQ1",
     "label": "5-deoxyribose 1-phosphate isomerase"
    },
    {
     "id": "UniProtKB:P0DTQ0",
     "label": "5-deoxy-D-ribulose 1-phosphate aldolase"
    },
    {
     "id": "UniProtKB:Q2RXI0",
     "label": "Methylthioribose-1-phosphate isomerase"
    },
    {
     "id": "UniProtKB:Q2RXI1",
     "label": "5-methylthioribulose-1-phosphate/5-deoxyribulose-1-phosphate aldolase"
    },
    {
     "id": "NCBIProtein:WP_000132325.1",
     "label": "S-methyl-5-thioribose kinase"
    },
    {
     "id": "NCBIProtein:WP_001022015.1",
     "label": "S-methyl-5-thioribose-1-phosphate isomerase"
    },
    {
     "id": "NCBIProtein:WP_000439686.1",
     "label": "L-fuculose-phosphate aldolase"
    },
    {
     "id": "NCBIProtein:WP_000689844.1",
     "label": "5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase"
    }
   ],
   "reactions": [
    "MetaCyc:RXN0-6550",
    "MetaCyc:RXN-21317",
    "MetaCyc:RXN-21315",
    "MetaCyc:RXN-21316"
   ]
  },
  {
   "id": "MetaCyc:PWY-8132",
   "label": "S-methyl-5-thio-α-D-ribose 1-phosphate degradation III",
   "pathway_type": "metabolic",
   "page": "records/MetaCyc_PWY-8132.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-8132.html",
   "taxa": [
    {
     "id": "NCBITaxon:269796",
     "label": "Rhodospirillum rubrum ATCC 11170"
    },
    {
     "id": "NCBITaxon:1085",
     "label": "Rhodospirillum rubrum"
    },
    {
     "id": "NCBITaxon:1076",
     "label": "Rhodopseudomonas palustris"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q2RXI0",
     "label": "Methylthioribose-1-phosphate isomerase"
    },
    {
     "id": "UniProtKB:Q2RXI1",
     "label": "5-methylthioribulose-1-phosphate/5-deoxyribulose-1-phosphate aldolase"
    },
    {
     "id": "UniProtKB:Q2RWB7",
     "label": "O-acetylhomoserine/O-acetylserine sulfhydrylase"
    }
   ],
   "reactions": [
    "MetaCyc:5.3.1.23-RXN",
    "MetaCyc:RXN-21318",
    "MetaCyc:RXN-21319",
    "MetaCyc:RXN-21320",
    "MetaCyc:O-ACETYLHOMOSERINE-THIOL-LYASE-RXN"
   ]
  },
  {
   "id": "MetaCyc:PWY-8178",
   "label": "pentose phosphate pathway (non-oxidative branch) II",
   "pathway_type": "pentose-phosphate-pathway",
   "page": "records/MetaCyc_PWY-8178.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-8178.html",
   "taxa": [
    {
     "id": "NCBITaxon:5759",
     "label": "Entamoeba histolytica"
    },
    {
     "id": "NCBITaxon:1515",
     "label": "Acetivibrio thermocellus"
    },
    {
     "id": "NCBITaxon:84032",
     "label": "Clostridium thermosuccinogenes"
    },
    {
     "id": "NCBITaxon:203119",
     "label": "Acetivibrio thermocellus ATCC 27405"
    },
    {
     "id": "NCBITaxon:637887",
     "label": "Acetivibrio thermocellus DSM 1313"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.2.1.1",
     "label": "transketolase"
    },
    {
     "id": "EC:2.7.1.90",
     "label": "diphosphate--fructose-6-phosphate 1-phosphotransferase"
    },
    {
     "id": "EC:4.1.2.13",
     "label": "fructose-bisphosphate aldolase"
    },
    {
     "id": "EC:5.1.3.1",
     "label": "ribulose-phosphate 3-epimerase"
    },
    {
     "id": "EC:5.3.1.6",
     "label": "ribose-5-phosphate isomerase"
    },
    {
     "id": "NCBIProtein:ABN51585.1",
     "label": "phosphofructokinase [Acetivibrio thermocellus ATCC 27405]"
    },
    {
     "id": "NCBIProtein:ABN51587.1",
     "label": "fructose-1,6-bisphosphate aldolase, class II [Acetivibrio thermocellus ATCC 27405]"
    },
    {
     "id": "NCBIProtein:ABN51812.1",
     "label": "ribulose-phosphate 3-epimerase [Acetivibrio thermocellus ATCC 27405]"
    },
    {
     "id": "NCBIProtein:ADU73172.1",
     "label": "Transketolase domain-containing protein [Acetivibrio thermocellus DSM 1313]"
    },
    {
     "id": "NCBIProtein:ADU73173.1",
     "label": "Transketolase domain-containing protein [Acetivibrio thermocellus DSM 1313]"
    },
    {
     "id": "NCBIProtein:ADU73386.1",
     "label": "Transketolase domain-containing protein [Acetivibrio thermocellus DSM 1313]"
    },
    {
     "id": "NCBIProtein:ADU73387.1",
     "label": "Transketolase central region [Acetivibrio thermocellus DSM 1313]"
    },
    {
     "id": "NCBIProtein:ADU74718.1",
     "label": "ribulose-phosphate 3-epimerase [Acetivibrio thermocellus DSM 1313]"
    },
    {
     "id": "NCBIProtein:ADU74927.1",
     "label": "fructose-1,6-bisphosphate aldolase, class II [Acetivibrio thermocellus DSM 1313]"
    },
    {
     "id": "NCBIProtein:ADU74928.1",
     "label": "phosphofructokinase [Acetivibrio thermocellus DSM 1313]"
    },
    {
     "id": "NCBIProtein:ADU75484.1",
     "label": "CoA-binding domain protein [Acetivibrio thermocellus DSM 1313]"
    },
    {
     "id": "NCBIProtein:PNT93300.1",
     "label": "6-phosphofructokinase [Clostridium thermosuccinogenes]"
    },
    {
     "id": "NCBIProtein:PNT94038.1",
     "label": "6-phosphofructokinase [Clostridium thermosuccinogenes]"
    },
    {
     "id": "UniProtKB:A3DIL8",
     "label": "Sugar-phosphate isomerase, RpiB/LacA/LacB family"
    }
   ],
   "reactions": [
    "MetaCyc:RXN-21730",
    "MetaCyc:SEDOBISALDOL-RXN",
    "MetaCyc:1TRANSKETO-RXN",
    "MetaCyc:2TRANSKETO-RXN",
    "MetaCyc:RIB5PISOM-RXN",
    "MetaCyc:RIBULP3EPIM-RXN"
   ]
  },
  {
   "id": "MetaCyc:PWY-8383",
   "label": "myxochelin A and B biosynthesis",
   "pathway_type": "siderophore-biosynthesis",
   "page": "records/MetaCyc_PWY-8383.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY-8383.html",
   "taxa": [
    {
     "id": "NCBITaxon:675526",
     "label": "Allostigmatella aurantiaca Sg a15"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q9F638",
     "label": "MxcE (myxochelin biosynthesis protein)"
    },
    {
     "id": "UniProtKB:Q9F637",
     "label": "MxcF (aryl-carrier protein)"
    },
    {
     "id": "UniProtKB:Q9F636",
     "label": "MxcG (myxochelin biosynthesis protein)"
    },
    {
     "id": "UniProtKB:Q9F631",
     "label": "MxcL (myxochelin biosynthesis protein)"
    }
   ],
   "reactions": [
    "MetaCyc:DHBAMPLIG-RXN",
    "MetaCyc:RXN-23310",
    "MetaCyc:RXN-22679",
    "MetaCyc:RXN-23308",
    "MetaCyc:RXN-23316",
    "MetaCyc:RXN-23312",
    "MetaCyc:RXN-23313",
    "MetaCyc:RXN-23314",
    "MetaCyc:RXN-23315"
   ]
  },
  {
   "id": "MetaCyc:PWY0-1241",
   "label": "ADP-L-glycero-beta-D-manno-heptose biosynthesis",
   "pathway_type": "adp-l-glycero-beta-d-manno-heptose-biosynthesis",
   "page": "records/MetaCyc_PWY0-1241.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-1241.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P63224",
     "label": "Phosphoheptose isomerase"
    },
    {
     "id": "UniProtKB:P76658",
     "label": "Bifunctional protein HldE"
    },
    {
     "id": "UniProtKB:P63228",
     "label": "D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase"
    },
    {
     "id": "UniProtKB:P67910",
     "label": "ADP-L-glycero-D-manno-heptose-6-epimerase"
    }
   ],
   "reactions": [
    "RHEA:27490",
    "RHEA:27474",
    "RHEA:28519",
    "RHEA:27466",
    "RHEA:17578"
   ]
  },
  {
   "id": "MetaCyc:PWY0-1277",
   "label": "3-phenylpropanoate and 3-(3-hydroxyphenyl)propanoate degradation",
   "pathway_type": "aromatic-compound-degradation",
   "page": "records/MetaCyc_PWY0-1277.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-1277.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0ABR5",
     "label": "3-phenylpropionate/cinnamic acid dioxygenase subunit alpha"
    },
    {
     "id": "UniProtKB:Q47140",
     "label": "3-phenylpropionate/cinnamic acid dioxygenase subunit beta"
    },
    {
     "id": "UniProtKB:P0ABW0",
     "label": "3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit"
    },
    {
     "id": "UniProtKB:P77650",
     "label": "3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+) reductase component"
    },
    {
     "id": "UniProtKB:P0CI31",
     "label": "3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase"
    },
    {
     "id": "UniProtKB:P77397",
     "label": "3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase"
    },
    {
     "id": "UniProtKB:P0ABR9",
     "label": "2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase"
    },
    {
     "id": "UniProtKB:P77044",
     "label": "2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase"
    },
    {
     "id": "UniProtKB:P77608",
     "label": "2-keto-4-pentenoate hydratase"
    },
    {
     "id": "UniProtKB:P51020",
     "label": "4-hydroxy-2-oxovalerate aldolase"
    },
    {
     "id": "UniProtKB:P77580",
     "label": "Acetaldehyde dehydrogenase"
    }
   ],
   "reactions": [
    "RHEA:20358",
    "RHEA:25063",
    "RHEA:24786",
    "RHEA:23841",
    "RHEA:34188",
    "RHEA:22582",
    "RHEA:22625",
    "RHEA:23289"
   ]
  },
  {
   "id": "MetaCyc:PWY0-1280",
   "label": "ethylene glycol degradation",
   "pathway_type": "alcohol-degradation",
   "page": "records/MetaCyc_PWY0-1280.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-1280.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    },
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    },
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0A9S1",
     "label": "Lactaldehyde reductase"
    },
    {
     "id": "UniProtKB:P25553",
     "label": "Lactaldehyde dehydrogenase"
    },
    {
     "id": "UniProtKB:P0ACJ8",
     "label": "DNA-binding transcriptional dual regulator CRP"
    },
    {
     "id": "UniProtKB:P0ACK8",
     "label": "L-fucose operon activator"
    },
    {
     "id": "UniProtKB:P0A9E5",
     "label": "Fumarate and nitrate reduction regulatory protein"
    },
    {
     "id": "UniProtKB:P03004",
     "label": "Chromosomal replication initiator protein DnaA"
    },
    {
     "id": "UniProtKB:P0A9Q1",
     "label": "Aerobic respiration control protein ArcA"
    },
    {
     "id": "UniProtKB:P52044",
     "label": "Uncharacterized HTH-type transcriptional regulator YgfI"
    },
    {
     "id": "UniProtKB:P0ACH5",
     "label": "Multiple antibiotic resistance protein MarA"
    },
    {
     "id": "UniProtKB:P0A9E2",
     "label": "Regulatory protein SoxS"
    },
    {
     "id": "UniProtKB:P0ACI0",
     "label": "Right origin-binding protein"
    },
    {
     "id": "UniProtKB:P0A6X7",
     "label": "Integration host factor subunit alpha"
    },
    {
     "id": "UniProtKB:P0A6Y1",
     "label": "Integration host factor subunit beta"
    },
    {
     "id": "Entrez:947273",
     "label": "fucO"
    },
    {
     "id": "Entrez:945672",
     "label": "aldA"
    }
   ],
   "reactions": [
    "RHEA:27631",
    "RHEA:20002",
    "MetaCyc:PWY-6649",
    "MetaCyc:GLYOXDEG-PWY",
    "MetaCyc:GLYCOLATEMET-PWY",
    "MetaCyc:GLYCOL-GLYOXDEG-PWY",
    "PathBank:SMP0002052",
    "PathBank:SMP0000847"
   ]
  },
  {
   "id": "MetaCyc:PWY0-1300",
   "label": "2-O-alpha-mannosyl-D-glycerate degradation",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/MetaCyc_PWY0-1300.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-1300.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    },
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P54745",
     "label": "PTS system 2-O-alpha-mannosyl-D-glycerate-specific EIIABC component"
    },
    {
     "id": "UniProtKB:P54746",
     "label": "Mannosylglycerate hydrolase"
    },
    {
     "id": "UniProtKB:P23524",
     "label": "Glycerate 2-kinase"
    },
    {
     "id": "UniProtKB:P08839",
     "label": "Phosphoenolpyruvate-protein phosphotransferase"
    },
    {
     "id": "UniProtKB:P0AA04",
     "label": "Phosphocarrier protein HPr"
    },
    {
     "id": "UniProtKB:P13669",
     "label": "Mannosyl-D-glycerate transport/metabolism system repressor MngR"
    },
    {
     "id": "UniProtKB:P37047",
     "label": "Carbohydrate diacid regulator"
    },
    {
     "id": "UniProtKB:P0ACF8",
     "label": "DNA-binding protein H-NS"
    },
    {
     "id": "UniProtKB:P0A9E5",
     "label": "Fumarate and nitrate reduction regulatory protein"
    },
    {
     "id": "UniProtKB:P0A9A9",
     "label": "Ferric uptake regulation protein"
    },
    {
     "id": "UniProtKB:P0A8M6",
     "label": "Pole-localizer protein TmaR"
    },
    {
     "id": "Entrez:945355",
     "label": "mngA"
    },
    {
     "id": "Entrez:945359",
     "label": "mngB"
    },
    {
     "id": "Entrez:945371",
     "label": "mngR"
    },
    {
     "id": "Entrez:947632",
     "label": "garK"
    },
    {
     "id": "Entrez:944860",
     "label": "cdaR"
    }
   ],
   "reactions": [
    "MetaCyc:RXN0-5216",
    "RHEA:27378",
    "RHEA:33308",
    "RHEA:23881",
    "MetaCyc:MANNCAT-PWY",
    "MetaCyc:COLANSYN-PWY"
   ]
  },
  {
   "id": "MetaCyc:PWY0-1312",
   "label": "acetate and ATP formation from acetyl-CoA I",
   "pathway_type": "fermentation",
   "page": "records/MetaCyc_PWY0-1312.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-1312.html",
   "taxa": [
    {
     "id": "NCBITaxon:2336",
     "label": "Thermotoga maritima"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.3.1.8",
     "label": "phosphate acetyltransferase"
    },
    {
     "id": "EC:2.7.2.1",
     "label": "acetate kinase"
    },
    {
     "id": "UniProtKB:Q9WYB1",
     "label": "Acetate kinase"
    },
    {
     "id": "UniProtKB:Q9X0L4",
     "label": "Phosphate acetyltransferase"
    }
   ],
   "reactions": [
    "RHEA:19522",
    "RHEA:11354"
   ]
  },
  {
   "id": "MetaCyc:PWY0-1338",
   "label": "polymyxin resistance",
   "pathway_type": "aminoarabinose-lipid-a-modification",
   "page": "records/MetaCyc_PWY0-1338.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-1338.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P77398",
     "label": "Bifunctional polymyxin resistance protein ArnA"
    },
    {
     "id": "UniProtKB:P77690",
     "label": "UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase"
    },
    {
     "id": "UniProtKB:P77757",
     "label": "Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase"
    },
    {
     "id": "UniProtKB:P76472",
     "label": "Probable 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD"
    },
    {
     "id": "UniProtKB:P76473",
     "label": "Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase"
    },
    {
     "id": "UniProtKB:Q47377",
     "label": "Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE"
    },
    {
     "id": "UniProtKB:P76474",
     "label": "Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF"
    }
   ],
   "reactions": [
    "RHEA:24703",
    "RHEA:24712",
    "RHEA:24707",
    "RHEA:27723",
    "RHEA:27735",
    "RHEA:35372"
   ]
  },
  {
   "id": "MetaCyc:PWY0-1352",
   "label": "nitrate reduction VIII (dissimilatory)",
   "pathway_type": "energy metabolism",
   "page": "records/MetaCyc_PWY0-1352.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-1352.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P09152",
     "label": "Respiratory nitrate reductase 1 alpha chain"
    },
    {
     "id": "UniProtKB:P11349",
     "label": "Respiratory nitrate reductase 1 beta chain"
    },
    {
     "id": "UniProtKB:P11350",
     "label": "Respiratory nitrate reductase 1 gamma chain"
    },
    {
     "id": "UniProtKB:P19319",
     "label": "Respiratory nitrate reductase 2 alpha chain"
    },
    {
     "id": "UniProtKB:P19318",
     "label": "Respiratory nitrate reductase 2 beta chain"
    },
    {
     "id": "UniProtKB:P0AF32",
     "label": "Respiratory nitrate reductase 2 gamma chain"
    },
    {
     "id": "UniProtKB:P0AFC3",
     "label": "NADH-quinone oxidoreductase subunit A"
    },
    {
     "id": "UniProtKB:P0AFC7",
     "label": "NADH-quinone oxidoreductase subunit B"
    },
    {
     "id": "UniProtKB:P33599",
     "label": "NADH-quinone oxidoreductase subunit C/D"
    },
    {
     "id": "UniProtKB:P0AFD1",
     "label": "NADH-quinone oxidoreductase subunit E"
    },
    {
     "id": "UniProtKB:P31979",
     "label": "NADH-quinone oxidoreductase subunit F"
    },
    {
     "id": "UniProtKB:P33602",
     "label": "NADH-quinone oxidoreductase subunit G"
    },
    {
     "id": "UniProtKB:P0AFD4",
     "label": "NADH-quinone oxidoreductase subunit H"
    },
    {
     "id": "UniProtKB:P0AFD6",
     "label": "NADH-quinone oxidoreductase subunit I"
    },
    {
     "id": "UniProtKB:P0AFE0",
     "label": "NADH-quinone oxidoreductase subunit J"
    },
    {
     "id": "UniProtKB:P0AFE4",
     "label": "NADH-quinone oxidoreductase subunit K"
    },
    {
     "id": "UniProtKB:P33607",
     "label": "NADH-quinone oxidoreductase subunit L"
    },
    {
     "id": "UniProtKB:P0AFE8",
     "label": "NADH-quinone oxidoreductase subunit M"
    },
    {
     "id": "UniProtKB:P0AFF0",
     "label": "NADH-quinone oxidoreductase subunit N"
    },
    {
     "id": "UniProtKB:P0AF26",
     "label": "Nitrate reductase molybdenum cofactor assembly chaperone NarJ"
    },
    {
     "id": "UniProtKB:P19317",
     "label": "Probable nitrate reductase molybdenum cofactor assembly chaperone NarW"
    },
    {
     "id": "UniProtKB:P0AF28",
     "label": "Nitrate/nitrite response regulator protein NarL"
    },
    {
     "id": "UniProtKB:P0A9E5",
     "label": "Fumarate and nitrate reduction regulatory protein"
    },
    {
     "id": "UniProtKB:P13445",
     "label": "RNA polymerase sigma factor RpoS"
    },
    {
     "id": "UniProtKB:P00393",
     "label": "Type II NADH:quinone oxidoreductase"
    }
   ],
   "reactions": [
    "MetaCyc:RXN0-5388",
    "MetaCyc:RXN0-3501",
    "RHEA:29100",
    "RHEA:29136"
   ]
  },
  {
   "id": "MetaCyc:PWY0-1433",
   "label": "tetrahydromonapterin biosynthesis",
   "pathway_type": "pterin-biosynthesis",
   "page": "records/MetaCyc_PWY0-1433.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-1433.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0A6T5",
     "label": "GTP cyclohydrolase 1"
    },
    {
     "id": "UniProtKB:P0AC19",
     "label": "Dihydroneopterin triphosphate 2'-epimerase"
    },
    {
     "id": "UniProtKB:P0AFS3",
     "label": "Dihydromonapterin reductase"
    }
   ],
   "reactions": [
    "RHEA:17474",
    "RHEA:28347",
    "RHEA:34848"
   ]
  },
  {
   "id": "MetaCyc:PWY0-1471",
   "label": "uracil degradation III",
   "pathway_type": "uracil-catabolism-rut-pathway",
   "page": "records/MetaCyc_PWY0-1471.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-1471.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P75893",
     "label": "FMN reductase (NADH) RutF"
    },
    {
     "id": "UniProtKB:P75898",
     "label": "Pyrimidine monooxygenase RutA"
    },
    {
     "id": "UniProtKB:P75897",
     "label": "Ureidoacrylate amidohydrolase RutB"
    },
    {
     "id": "UniProtKB:P0AFQ5",
     "label": "3-aminoacrylate deaminase RutC"
    },
    {
     "id": "UniProtKB:P39831",
     "label": "NADP-dependent 3-hydroxy acid dehydrogenase YdfG"
    },
    {
     "id": "UniProtKB:P75894",
     "label": "Probable malonic semialdehyde reductase RutE"
    }
   ],
   "reactions": [
    "RHEA:21622",
    "RHEA:31588",
    "RHEA:31604",
    "RHEA:15650",
    "RHEA:34948",
    "RHEA:26440"
   ]
  },
  {
   "id": "MetaCyc:PWY0-1477",
   "label": "ethanolamine utilization",
   "pathway_type": "ethanolamine-utilization",
   "page": "records/MetaCyc_PWY0-1477.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-1477.html",
   "taxa": [
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    },
    {
     "id": "NCBITaxon:99287",
     "label": "Salmonella enterica subsp. enterica serovar Typhimurium str. LT2"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0A1C9",
     "label": "Bacterial microcompartment shell protein EutL"
    },
    {
     "id": "UniProtKB:P0A206",
     "label": "Ethanolamine utilization protein EutJ"
    },
    {
     "id": "UniProtKB:P0A208",
     "label": "Probable acetate kinase EutP"
    },
    {
     "id": "UniProtKB:P0ABF4",
     "label": "Bacterial microcompartment shell protein EutM"
    },
    {
     "id": "UniProtKB:P0AEJ6",
     "label": "Ethanolamine ammonia-lyase large subunit"
    },
    {
     "id": "UniProtKB:P0AEJ8",
     "label": "Bacterial microcompartment shell vertex protein EutN"
    },
    {
     "id": "UniProtKB:P19264",
     "label": "Ethanolamine ammonia-lyase large subunit"
    },
    {
     "id": "UniProtKB:P19265",
     "label": "Ethanolamine ammonia-lyase small subunit"
    },
    {
     "id": "UniProtKB:P19636",
     "label": "Ethanolamine ammonia-lyase small subunit"
    },
    {
     "id": "UniProtKB:P36547",
     "label": "HTH-type DNA-binding transcriptional activator EutR"
    },
    {
     "id": "UniProtKB:P41790",
     "label": "Phosphate acetyltransferase EutD"
    },
    {
     "id": "UniProtKB:P41791",
     "label": "Bacterial microcompartment shell protein EutM"
    },
    {
     "id": "UniProtKB:P41792",
     "label": "Bacterial microcompartment shell vertex protein EutN"
    },
    {
     "id": "UniProtKB:P41793",
     "label": "Acetaldehyde dehydrogenase (acetylating) EutE"
    },
    {
     "id": "UniProtKB:P41795",
     "label": "Probable alcohol dehydrogenase EutG"
    },
    {
     "id": "UniProtKB:P41796",
     "label": "Probable ethanolamine permease EutH"
    },
    {
     "id": "UniProtKB:P63746",
     "label": "Bacterial microcompartment shell protein EutS"
    },
    {
     "id": "UniProtKB:P65643",
     "label": "Corrinoid adenosyltransferase EutT"
    },
    {
     "id": "UniProtKB:P76540",
     "label": "Bacterial microcompartment shell protein EutK"
    },
    {
     "id": "UniProtKB:P76541",
     "label": "Bacterial microcompartment shell protein EutL"
    },
    {
     "id": "UniProtKB:P76551",
     "label": "Ethanolamine ammonia-lyase reactivase EutA"
    },
    {
     "id": "UniProtKB:P76552",
     "label": "Probable ethanolamine permease EutH"
    },
    {
     "id": "UniProtKB:P76553",
     "label": "Probable alcohol dehydrogenase EutG"
    },
    {
     "id": "UniProtKB:P76555",
     "label": "Acetate kinase EutQ"
    },
    {
     "id": "UniProtKB:P76556",
     "label": "Probable acetate kinase EutP"
    },
    {
     "id": "UniProtKB:P77218",
     "label": "Phosphate acetyltransferase EutD"
    },
    {
     "id": "UniProtKB:P77277",
     "label": "Ethanolamine utilization protein EutJ"
    },
    {
     "id": "UniProtKB:P77445",
     "label": "Acetaldehyde dehydrogenase (acetylating) EutE"
    },
    {
     "id": "UniProtKB:Q9ZFU7",
     "label": "HTH-type DNA-binding transcriptional activator EutR"
    },
    {
     "id": "UniProtKB:Q9ZFU8",
     "label": "Bacterial microcompartment shell protein EutK"
    },
    {
     "id": "UniProtKB:Q9ZFV2",
     "label": "Ethanolamine ammonia-lyase reactivase EutA"
    },
    {
     "id": "UniProtKB:Q9ZFV4",
     "label": "Corrinoid adenosyltransferase EutT"
    },
    {
     "id": "UniProtKB:Q9ZFV5",
     "label": "Acetate kinase EutQ"
    },
    {
     "id": "UniProtKB:Q9ZFV7",
     "label": "Bacterial microcompartment shell protein EutS"
    }
   ],
   "reactions": [
    "MetaCyc:ACETALD-DEHYDROG-RXN",
    "MetaCyc:ACETATEKIN-RXN",
    "MetaCyc:ALCOHOL-DEHYDROG-RXN",
    "MetaCyc:ETHAMLY-RXN",
    "MetaCyc:PHOSACETYLTRANS-RXN",
    "MetaCyc:RXN-19336"
   ]
  },
  {
   "id": "MetaCyc:PWY0-1517",
   "label": "sedoheptulose bisphosphate bypass",
   "pathway_type": "carbohydrate-metabolism",
   "page": "records/MetaCyc_PWY0-1517.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-1517.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    },
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    },
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    },
    {
     "id": "NCBITaxon:679895",
     "label": "Escherichia coli BW25113"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0A796",
     "label": "ATP-dependent 6-phosphofructokinase isozyme 1"
    },
    {
     "id": "UniProtKB:P0AB71",
     "label": "Fructose-bisphosphate aldolase class 2"
    },
    {
     "id": "UniProtKB:P0ACP1",
     "label": "Catabolite repressor/activator"
    },
    {
     "id": "UniProtKB:P0ACJ8",
     "label": "DNA-binding transcriptional dual regulator CRP"
    },
    {
     "id": "UniProtKB:P13445",
     "label": "RNA polymerase sigma factor RpoS"
    },
    {
     "id": "UniProtKB:P00579",
     "label": "RNA polymerase sigma factor RpoD"
    },
    {
     "id": "UniProtKB:P69913",
     "label": "Carbon storage regulator"
    },
    {
     "id": "UniProtKB:P69786",
     "label": "PTS system glucose-specific EIICB component"
    },
    {
     "id": "UniProtKB:P0A9E5",
     "label": "Fumarate and nitrate reduction regulatory protein"
    },
    {
     "id": "UniProtKB:P0A9A9",
     "label": "Ferric uptake regulation protein"
    },
    {
     "id": "UniProtKB:P0ABJ1",
     "label": "Cytochrome bo(3) ubiquinol oxidase subunit 2"
    },
    {
     "id": "UniProtKB:P0ABK2",
     "label": "Cytochrome bd-I ubiquinol oxidase subunit 2"
    },
    {
     "id": "Entrez:948412",
     "label": "pfkA"
    },
    {
     "id": "Entrez:947415",
     "label": "fbaA"
    }
   ],
   "reactions": [
    "RHEA:31444",
    "RHEA:30169",
    "PathBank:SMP0121065",
    "PathBank:SMP0000807"
   ]
  },
  {
   "id": "MetaCyc:PWY0-301",
   "label": "L-ascorbate degradation I (bacterial, anaerobic)",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/MetaCyc_PWY0-301.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-301.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    },
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P39304",
     "label": "3-keto-L-gulonate-6-phosphate decarboxylase UlaD"
    },
    {
     "id": "UniProtKB:P39301",
     "label": "Ascorbate-specific PTS system EIIC component"
    },
    {
     "id": "UniProtKB:P0A9W0",
     "label": "HTH-type transcriptional regulator UlaR"
    },
    {
     "id": "UniProtKB:P69820",
     "label": "Ascorbate-specific PTS system EIIA component"
    },
    {
     "id": "UniProtKB:P39306",
     "label": "L-ribulose-5-phosphate 4-epimerase UlaF"
    },
    {
     "id": "UniProtKB:P39300",
     "label": "Probable L-ascorbate-6-phosphate lactonase UlaG"
    },
    {
     "id": "UniProtKB:P69822",
     "label": "Ascorbate-specific PTS system EIIB component"
    },
    {
     "id": "UniProtKB:P39305",
     "label": "L-ribulose-5-phosphate 3-epimerase UlaE"
    },
    {
     "id": "UniProtKB:P0AA04",
     "label": "Phosphocarrier protein HPr"
    },
    {
     "id": "UniProtKB:P08839",
     "label": "Phosphoenolpyruvate-protein phosphotransferase"
    },
    {
     "id": "Entrez:948705",
     "label": "ulaG"
    },
    {
     "id": "Entrez:948717",
     "label": "ulaA"
    }
   ],
   "reactions": [
    "MetaCyc:RXN0-2461",
    "RHEA:28804",
    "RHEA:14354",
    "RHEA:18499",
    "RHEA:22369",
    "MetaCyc:NONOXIPENT-PWY"
   ]
  },
  {
   "id": "MetaCyc:PWY0-321",
   "label": "phenylacetate degradation I (aerobic)",
   "pathway_type": "degradation",
   "page": "records/MetaCyc_PWY0-321.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-321.html",
   "taxa": [
    {
     "id": "NCBITaxon:134536",
     "label": "Paraburkholderia caledonica"
    },
    {
     "id": "NCBITaxon:198931",
     "label": "Pseudomonas sp. Y2"
    },
    {
     "id": "NCBITaxon:303",
     "label": "Pseudomonas putida"
    },
    {
     "id": "NCBITaxon:566546",
     "label": "Escherichia coli W"
    },
    {
     "id": "NCBITaxon:59406",
     "label": "Aromatoleum evansii"
    },
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    },
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [],
   "reactions": [
    "MetaCyc:RXN-10819",
    "MetaCyc:RXN0-2042",
    "MetaCyc:RXN0-6510",
    "MetaCyc:RXNMETA-12671",
    "MetaCyc:RXNMETA-12672",
    "MetaCyc:RXN0-6512",
    "MetaCyc:RXN-2425",
    "MetaCyc:RXN0-2044",
    "MetaCyc:RXN-3641",
    "MetaCyc:RXN-17752",
    "MetaCyc:RXN0-7103"
   ]
  },
  {
   "id": "MetaCyc:PWY0-41",
   "label": "allantoin degradation IV (anaerobic)",
   "pathway_type": "allantoin-degradation",
   "page": "records/MetaCyc_PWY0-41.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-41.html",
   "taxa": [
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P77671",
     "label": "Allantoinase"
    },
    {
     "id": "UniProtKB:P77425",
     "label": "Allantoate amidohydrolase"
    },
    {
     "id": "UniProtKB:P75713",
     "label": "(S)-ureidoglycine aminohydrolase"
    },
    {
     "id": "UniProtKB:P77555",
     "label": "Ureidoglycolate dehydrogenase (NAD(+))"
    },
    {
     "id": "UniProtKB:Q47208",
     "label": "Oxamate carbamoyltransferase subunit AllF"
    },
    {
     "id": "UniProtKB:P77129",
     "label": "Oxamate carbamoyltransferase subunit AllG"
    },
    {
     "id": "UniProtKB:P0AAS5",
     "label": "Oxamate carbamoyltransferase subunit AllH"
    },
    {
     "id": "UniProtKB:P37306",
     "label": "Carbamate kinase"
    }
   ],
   "reactions": [
    "RHEA:17030",
    "RHEA:27486",
    "RHEA:25242",
    "RHEA:15330",
    "RHEA:22986",
    "RHEA:30757",
    "RHEA:15650"
   ]
  },
  {
   "id": "MetaCyc:PWY0-42",
   "label": "2-methylcitrate cycle I",
   "pathway_type": "propionate-catabolic-pathway",
   "page": "records/MetaCyc_PWY0-42.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-42.html",
   "taxa": [
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P77495",
     "label": "Propionate--CoA ligase"
    },
    {
     "id": "UniProtKB:P27550",
     "label": "Acetyl-coenzyme A synthetase"
    },
    {
     "id": "UniProtKB:P31660",
     "label": "2-methylcitrate synthase"
    },
    {
     "id": "UniProtKB:P77243",
     "label": "2-methylcitrate dehydratase"
    },
    {
     "id": "UniProtKB:P36683",
     "label": "Aconitate hydratase B"
    },
    {
     "id": "UniProtKB:P77541",
     "label": "2-methylisocitrate lyase"
    }
   ],
   "reactions": [
    "RHEA:20374",
    "RHEA:57493",
    "RHEA:57497",
    "RHEA:17943",
    "RHEA:16810"
   ]
  },
  {
   "id": "MetaCyc:PWY0-43",
   "label": "conversion of succinate to propanoate",
   "pathway_type": "proposed-succinate-decarboxylation-cycle",
   "page": "records/MetaCyc_PWY0-43.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-43.html",
   "taxa": [
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P27253",
     "label": "Methylmalonyl-CoA mutase"
    },
    {
     "id": "UniProtKB:P52045",
     "label": "Methylmalonyl-CoA decarboxylase"
    },
    {
     "id": "UniProtKB:P52043",
     "label": "Propanoyl-CoA:succinate CoA transferase"
    }
   ],
   "reactions": [
    "RHEA:22890",
    "RHEA:27667",
    "RHEA:28011"
   ]
  },
  {
   "id": "MetaCyc:PWY0-501",
   "label": "lipoate biosynthesis and incorporation I",
   "pathway_type": "lipoate-biosynthesis-and-incorporation",
   "page": "records/MetaCyc_PWY0-501.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-501.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P60720",
     "label": "Octanoyltransferase"
    },
    {
     "id": "UniProtKB:P60716",
     "label": "Lipoyl synthase"
    }
   ],
   "reactions": [
    "RHEA:17666",
    "RHEA:16586"
   ]
  },
  {
   "id": "MetaCyc:PWY0-521",
   "label": "fructoselysine and psicoselysine degradation",
   "pathway_type": "glycated-amino-acid-catabolism",
   "page": "records/MetaCyc_PWY0-521.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY0-521.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    },
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    },
    {
     "id": "NCBITaxon:679895",
     "label": "Escherichia coli BW25113"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P45541",
     "label": "Fructoselysine 3-epimerase"
    },
    {
     "id": "UniProtKB:P45543",
     "label": "Fructoselysine 6-kinase"
    },
    {
     "id": "UniProtKB:P0AC00",
     "label": "Fructoselysine 6-phosphate deglycase"
    },
    {
     "id": "UniProtKB:P45539",
     "label": "Probable fructoselysine/psicoselysine transporter FrlA"
    },
    {
     "id": "UniProtKB:P45544",
     "label": "Probable fructoselysine utilization operon transcriptional repressor"
    },
    {
     "id": "UniProtKB:P0AGB3",
     "label": "RNA polymerase sigma factor RpoH"
    },
    {
     "id": "UniProtKB:P0ACJ8",
     "label": "DNA-binding transcriptional dual regulator CRP"
    }
   ],
   "reactions": [
    "RHEA:28391",
    "RHEA:28379",
    "MetaCyc:RXN0-963"
   ]
  },
  {
   "id": "MetaCyc:PWY1-3",
   "label": "polyhydroxybutanoate biosynthesis",
   "pathway_type": "storage-polymer-biosynthesis",
   "page": "records/MetaCyc_PWY1-3.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PWY1-3.html",
   "taxa": [
    {
     "id": "NCBITaxon:381666",
     "label": "Cupriavidus necator H16"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P14611",
     "label": "Acetyl-CoA acetyltransferase"
    },
    {
     "id": "UniProtKB:P14697",
     "label": "Acetoacetyl-CoA reductase"
    },
    {
     "id": "UniProtKB:P23608",
     "label": "Poly(3-hydroxyalkanoate) polymerase subunit PhaC"
    }
   ],
   "reactions": [
    "RHEA:21037",
    "RHEA:45798",
    "RHEA:15406"
   ]
  },
  {
   "id": "MetaCyc:PYRIDNUCSAL-PWY",
   "label": "NAD salvage pathway I (PNC VI cycle)",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/MetaCyc_PYRIDNUCSAL-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PYRIDNUCSAL-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:2",
     "label": "Bacteria"
    }
   ],
   "proteins": [
    {
     "id": "EC:3.6.1.22",
     "label": "NAD(+) diphosphatase"
    },
    {
     "id": "EC:3.2.2.14",
     "label": "NMN nucleosidase"
    },
    {
     "id": "EC:3.5.1.19",
     "label": "nicotinamidase"
    },
    {
     "id": "EC:6.3.4.21",
     "label": "nicotinate phosphoribosyltransferase"
    },
    {
     "id": "EC:2.7.7.18",
     "label": "nicotinate-nucleotide adenylyltransferase"
    },
    {
     "id": "EC:6.3.5.1",
     "label": "NAD(+) synthase (glutamine-hydrolyzing)"
    }
   ],
   "reactions": [
    "RHEA:11801",
    "RHEA:23141",
    "RHEA:14546",
    "RHEA:36164",
    "RHEA:22861",
    "RHEA:24385"
   ]
  },
  {
   "id": "MetaCyc:PYRIDNUCSYN-PWY",
   "label": "NAD de novo biosynthesis I (from aspartate)",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/MetaCyc_PYRIDNUCSYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PYRIDNUCSYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:2",
     "label": "Bacteria"
    }
   ],
   "proteins": [
    {
     "id": "EC:1.4.3.16",
     "label": "L-aspartate oxidase"
    },
    {
     "id": "EC:2.5.1.72",
     "label": "quinolinate synthase"
    },
    {
     "id": "EC:2.4.2.19",
     "label": "quinolinate phosphoribosyltransferase"
    },
    {
     "id": "EC:2.7.7.18",
     "label": "nicotinate-nucleotide adenylyltransferase"
    },
    {
     "id": "EC:6.3.1.5",
     "label": "NAD(+) synthase"
    },
    {
     "id": "EC:6.3.5.1",
     "label": "NAD(+) synthase (glutamine-hydrolyzing)"
    }
   ],
   "reactions": [
    "RHEA:25877",
    "RHEA:25889",
    "RHEA:12735",
    "RHEA:22861",
    "RHEA:21189",
    "RHEA:24385"
   ]
  },
  {
   "id": "MetaCyc:PYRIDOXSYN-PWY",
   "label": "pyridoxal 5'-phosphate biosynthesis I",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/MetaCyc_PYRIDOXSYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_PYRIDOXSYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:1.2.1.72",
     "label": "erythrose-4-phosphate dehydrogenase"
    },
    {
     "id": "EC:1.1.1.290",
     "label": "4-phosphoerythronate dehydrogenase"
    },
    {
     "id": "EC:2.6.1.52",
     "label": "phosphoserine transaminase"
    },
    {
     "id": "EC:1.1.1.262",
     "label": "4-hydroxythreonine-4-phosphate dehydrogenase"
    },
    {
     "id": "EC:2.2.1.7",
     "label": "1-deoxy-D-xylulose-5-phosphate synthase"
    },
    {
     "id": "EC:2.6.99.2",
     "label": "pyridoxine 5'-phosphate synthase"
    },
    {
     "id": "EC:1.4.3.5",
     "label": "pyridoxine 5'-phosphate oxidase"
    },
    {
     "id": "UniProtKB:P05459",
     "label": "Erythronate-4-phosphate dehydrogenase"
    },
    {
     "id": "UniProtKB:P0A794",
     "label": "Pyridoxine 5'-phosphate synthase"
    },
    {
     "id": "UniProtKB:P0A9B6",
     "label": "D-erythrose-4-phosphate dehydrogenase"
    },
    {
     "id": "UniProtKB:P0AFI7",
     "label": "Pyridoxine/pyridoxamine 5'-phosphate oxidase"
    },
    {
     "id": "UniProtKB:P19624",
     "label": "4-hydroxythreonine-4-phosphate dehydrogenase"
    },
    {
     "id": "UniProtKB:P23721",
     "label": "Phosphoserine aminotransferase"
    },
    {
     "id": "UniProtKB:P77488",
     "label": "1-deoxy-D-xylulose-5-phosphate synthase"
    }
   ],
   "reactions": [
    "RHEA:12057",
    "RHEA:18830",
    "RHEA:16575",
    "RHEA:32276",
    "RHEA:12606",
    "RHEA:15266",
    "RHEA:15150"
   ]
  },
  {
   "id": "MetaCyc:QUINATEDEG-PWY",
   "label": "quinate degradation I",
   "pathway_type": "aromatic-compound-catabolism",
   "page": "records/MetaCyc_QUINATEDEG-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_QUINATEDEG-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:62977",
     "label": "Acinetobacter baylyi ADP1"
    },
    {
     "id": "NCBITaxon:442",
     "label": "Gluconobacter oxydans"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q59086",
     "label": "Quinate/shikimate dehydrogenase (quinone)"
    },
    {
     "id": "UniProtKB:Q59087",
     "label": "Catabolic 3-dehydroquinate dehydratase"
    },
    {
     "id": "UniProtKB:Q43922",
     "label": "3-dehydroshikimate dehydratase"
    }
   ],
   "reactions": [
    "MetaCyc:1.1.99.25-RXN",
    "RHEA:21099",
    "RHEA:24849"
   ]
  },
  {
   "id": "MetaCyc:RHAMCAT-PWY",
   "label": "L-rhamnose degradation I",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/MetaCyc_RHAMCAT-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_RHAMCAT-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:2",
     "label": "Bacteria"
    }
   ],
   "proteins": [
    {
     "id": "EC:5.1.3.32",
     "label": "L-rhamnose mutarotase"
    },
    {
     "id": "EC:5.3.1.14",
     "label": "L-rhamnose isomerase"
    },
    {
     "id": "EC:2.7.1.5",
     "label": "rhamnulokinase"
    },
    {
     "id": "EC:4.1.2.19",
     "label": "rhamnulose-1-phosphate aldolase"
    }
   ],
   "reactions": [
    "MetaCyc:RXN-15356",
    "RHEA:20118",
    "RHEA:25585",
    "RHEA:23161",
    "RHEA:19690"
   ]
  },
  {
   "id": "MetaCyc:RIBOKIN-PWY",
   "label": "ribose phosphorylation",
   "pathway_type": "ribose-phosphorylation",
   "page": "records/MetaCyc_RIBOKIN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_RIBOKIN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    },
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P04982",
     "label": "D-ribose pyranase"
    },
    {
     "id": "UniProtKB:P0AEN8",
     "label": "L-fucose mutarotase"
    },
    {
     "id": "UniProtKB:P0A9J6",
     "label": "Ribokinase"
    },
    {
     "id": "UniProtKB:P04983",
     "label": "Ribose import ATP-binding protein RbsA"
    },
    {
     "id": "UniProtKB:P0AGI1",
     "label": "Ribose import permease protein RbsC"
    },
    {
     "id": "UniProtKB:P02925",
     "label": "Ribose import binding protein RbsB"
    },
    {
     "id": "UniProtKB:P0ACQ0",
     "label": "Ribose operon repressor"
    },
    {
     "id": "UniProtKB:P0ACJ8",
     "label": "DNA-binding transcriptional dual regulator CRP"
    },
    {
     "id": "UniProtKB:P31463",
     "label": "HTH-type transcriptional regulator YidZ"
    },
    {
     "id": "Entrez:948267",
     "label": "rbsD"
    },
    {
     "id": "Entrez:948264",
     "label": "rbsA"
    },
    {
     "id": "Entrez:948262",
     "label": "rbsC"
    },
    {
     "id": "Entrez:948261",
     "label": "rbsB"
    },
    {
     "id": "Entrez:948260",
     "label": "rbsK"
    },
    {
     "id": "Entrez:948266",
     "label": "rbsR"
    }
   ],
   "reactions": [
    "RHEA:25433",
    "MetaCyc:RXN-14904",
    "MetaCyc:RIBOKIN-RXN",
    "MetaCyc:ABC-28-RXN",
    "MetaCyc:NONOXIPENT-PWY",
    "MetaCyc:PWY0-662"
   ]
  },
  {
   "id": "MetaCyc:RIBOSYN2-PWY",
   "label": "flavin biosynthesis I",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/MetaCyc_RIBOSYN2-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_RIBOSYN2-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:3.5.4.25",
     "label": "GTP cyclohydrolase II"
    },
    {
     "id": "EC:3.5.4.26",
     "label": "diaminohydroxyphosphoribosylaminopyrimidine deaminase"
    },
    {
     "id": "EC:1.1.1.193",
     "label": "5-amino-6-(5-phosphoribosylamino)uracil reductase"
    },
    {
     "id": "EC:4.1.99.12",
     "label": "3,4-dihydroxy-2-butanone 4-phosphate synthase"
    },
    {
     "id": "EC:3.1.3.104",
     "label": "5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase"
    },
    {
     "id": "EC:2.5.1.78",
     "label": "6,7-dimethyl-8-ribityllumazine synthase"
    },
    {
     "id": "EC:2.5.1.9",
     "label": "riboflavin synthase"
    },
    {
     "id": "EC:2.7.1.26",
     "label": "riboflavin kinase"
    },
    {
     "id": "EC:2.7.7.2",
     "label": "FAD synthase"
    },
    {
     "id": "UniProtKB:P0A7I7",
     "label": "GTP cyclohydrolase-2"
    },
    {
     "id": "UniProtKB:P0A7J0",
     "label": "3,4-dihydroxy-2-butanone 4-phosphate synthase"
    },
    {
     "id": "UniProtKB:P0ADP0",
     "label": "5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB"
    },
    {
     "id": "UniProtKB:P0AFU8",
     "label": "Riboflavin synthase"
    },
    {
     "id": "UniProtKB:P0AG40",
     "label": "Bifunctional riboflavin kinase/FMN adenylyltransferase"
    },
    {
     "id": "UniProtKB:P25539",
     "label": "Riboflavin biosynthesis protein RibD"
    },
    {
     "id": "UniProtKB:P61714",
     "label": "6,7-dimethyl-8-ribityllumazine synthase"
    },
    {
     "id": "UniProtKB:P75809",
     "label": "5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YbjI"
    }
   ],
   "reactions": [
    "RHEA:23705",
    "RHEA:21869",
    "RHEA:17847",
    "RHEA:18458",
    "RHEA:25198",
    "RHEA:26153",
    "RHEA:20773",
    "RHEA:14358",
    "RHEA:17238"
   ]
  },
  {
   "id": "MetaCyc:SALVADEHYPOX-PWY",
   "label": "adenosine nucleotides degradation II",
   "pathway_type": "purine-nucleotide-degradation",
   "page": "records/MetaCyc_SALVADEHYPOX-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_SALVADEHYPOX-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    },
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P00634",
     "label": "Alkaline phosphatase"
    },
    {
     "id": "UniProtKB:P07024",
     "label": "Protein UshA"
    },
    {
     "id": "UniProtKB:P0ABP8",
     "label": "Purine nucleoside phosphorylase DeoD-type"
    },
    {
     "id": "UniProtKB:P0AE22",
     "label": "Class B acid phosphatase"
    },
    {
     "id": "UniProtKB:P22333",
     "label": "Adenosine deaminase"
    },
    {
     "id": "UniProtKB:P0A840",
     "label": "5'/3'-nucleotidase SurE"
    },
    {
     "id": "UniProtKB:P0AF24",
     "label": "Ribonucleotide monophosphatase NagD"
    },
    {
     "id": "UniProtKB:P45563",
     "label": "Purine nucleoside phosphorylase 2"
    },
    {
     "id": "UniProtKB:P0C037",
     "label": "Pyrimidine/purine nucleoside phosphorylase"
    },
    {
     "id": "UniProtKB:P33644",
     "label": "Peptidoglycan editing factor PgeF"
    },
    {
     "id": "UniProtKB:Q46799",
     "label": "Putative xanthine dehydrogenase molybdenum-binding subunit XdhA"
    },
    {
     "id": "UniProtKB:Q46800",
     "label": "Putative xanthine dehydrogenase FAD-binding subunit XdhB"
    },
    {
     "id": "UniProtKB:Q46801",
     "label": "Putative xanthine dehydrogenase iron-sulfur-binding subunit XdhC"
    },
    {
     "id": "Entrez:946878",
     "label": "xapA"
    },
    {
     "id": "Entrez:945283",
     "label": "umpH"
    },
    {
     "id": "Entrez:945654",
     "label": "deoD"
    },
    {
     "id": "UniProtKB:P23841",
     "label": "HTH-type transcriptional regulator XapR"
    },
    {
     "id": "Entrez:945851",
     "label": "add"
    }
   ],
   "reactions": [
    "MetaCyc:PWY-5691",
    "RHEA:29376",
    "RHEA:24409",
    "RHEA:27647",
    "RHEA:24671",
    "RHEA:16670"
   ]
  },
  {
   "id": "MetaCyc:SERSYN-PWY",
   "label": "L-serine biosynthesis I",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_SERSYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_SERSYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:1.1.1.95",
     "label": "phosphoglycerate dehydrogenase"
    },
    {
     "id": "EC:2.6.1.52",
     "label": "phosphoserine transaminase"
    },
    {
     "id": "EC:3.1.3.3",
     "label": "phosphoserine phosphatase"
    },
    {
     "id": "UniProtKB:P0A9T0",
     "label": "D-3-phosphoglycerate dehydrogenase"
    },
    {
     "id": "UniProtKB:P0AGB0",
     "label": "Phosphoserine phosphatase"
    },
    {
     "id": "UniProtKB:P23721",
     "label": "Phosphoserine aminotransferase"
    }
   ],
   "reactions": [
    "RHEA:12642",
    "RHEA:14331",
    "RHEA:21209"
   ]
  },
  {
   "id": "MetaCyc:SHIKIMATEDEG-PWY",
   "label": "shikimate degradation I",
   "pathway_type": "aromatic-compound-catabolism",
   "page": "records/MetaCyc_SHIKIMATEDEG-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_SHIKIMATEDEG-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:62977",
     "label": "Acinetobacter baylyi ADP1"
    },
    {
     "id": "NCBITaxon:471",
     "label": "Acinetobacter calcoaceticus"
    },
    {
     "id": "NCBITaxon:442",
     "label": "Gluconobacter oxydans"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:Q59086",
     "label": "Quinate/shikimate dehydrogenase (quinone)"
    },
    {
     "id": "UniProtKB:Q43922",
     "label": "3-dehydroshikimate dehydratase"
    },
    {
     "id": "UniProtKB:O83046",
     "label": "Pca operon regulatory protein"
    }
   ],
   "reactions": [
    "MetaCyc:SHIKIMATE-PQQ-RXN",
    "RHEA:24849"
   ]
  },
  {
   "id": "MetaCyc:THIOREDOX-PWY",
   "label": "thioredoxin pathway",
   "pathway_type": "thiol-redox-homeostasis",
   "page": "records/MetaCyc_THIOREDOX-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_THIOREDOX-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    },
    {
     "id": "NCBITaxon:272634",
     "label": "Mycoplasmoides pneumoniae M129"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0AA25",
     "label": "Thioredoxin 1"
    },
    {
     "id": "UniProtKB:P0AGG4",
     "label": "Thioredoxin 2"
    },
    {
     "id": "UniProtKB:P0A9P4",
     "label": "Thioredoxin reductase"
    },
    {
     "id": "UniProtKB:P75512",
     "label": "Thioredoxin"
    },
    {
     "id": "UniProtKB:P75531",
     "label": "Thioredoxin reductase"
    },
    {
     "id": "UniProtKB:P0ACQ4",
     "label": "DNA-binding transcriptional dual regulator OxyR"
    },
    {
     "id": "Entrez:947062",
     "label": "trxC"
    },
    {
     "id": "Entrez:948289",
     "label": "trxA"
    },
    {
     "id": "Entrez:949054",
     "label": "trxB"
    }
   ],
   "reactions": [
    "MetaCyc:THIOREDOXIN-REDUCT-NADPH-RXN",
    "MetaCyc:THIOREDOXIN-RXN",
    "RHEA:20347"
   ]
  },
  {
   "id": "MetaCyc:THISYN-PWY",
   "label": "superpathway of thiamine diphosphate biosynthesis I",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/MetaCyc_THISYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_THISYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P30136",
     "label": "Phosphomethylpyrimidine synthase"
    },
    {
     "id": "UniProtKB:P76422",
     "label": "Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase"
    },
    {
     "id": "UniProtKB:P30137",
     "label": "Thiamine-phosphate synthase"
    },
    {
     "id": "UniProtKB:P0AGG0",
     "label": "Thiamine-monophosphate kinase"
    },
    {
     "id": "UniProtKB:P30138",
     "label": "Sulfur carrier protein ThiS adenylyltransferase"
    },
    {
     "id": "UniProtKB:P30139",
     "label": "Thiazole synthase"
    },
    {
     "id": "UniProtKB:P30140",
     "label": "2-iminoacetate synthase"
    },
    {
     "id": "UniProtKB:P77718",
     "label": "tRNA sulfurtransferase"
    },
    {
     "id": "UniProtKB:P77488",
     "label": "1-deoxy-D-xylulose-5-phosphate synthase"
    },
    {
     "id": "UniProtKB:P0A6B7",
     "label": "Cysteine desulfurase IscS"
    },
    {
     "id": "UniProtKB:O32583",
     "label": "Sulfur carrier protein ThiS"
    }
   ],
   "reactions": [
    "RHEA:17458",
    "RHEA:43345",
    "RHEA:43341",
    "RHEA:12606",
    "RHEA:26362",
    "RHEA:26298",
    "RHEA:24841",
    "RHEA:19894",
    "RHEA:47845",
    "RHEA:15914"
   ]
  },
  {
   "id": "MetaCyc:THRDLCTCAT-PWY",
   "label": "L-threonine degradation III (to methylglyoxal)",
   "pathway_type": "threonine-catabolism-with-hypothetical-terminal-enzyme",
   "page": "records/MetaCyc_THRDLCTCAT-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_THRDLCTCAT-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    },
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P07913",
     "label": "L-threonine 3-dehydrogenase"
    },
    {
     "id": "UniProtKB:P46883",
     "label": "Primary amine oxidase"
    },
    {
     "id": "UniProtKB:P0AGE4",
     "label": "Serine/threonine transporter SstT"
    },
    {
     "id": "UniProtKB:P22731",
     "label": "High-affinity branched-chain amino acid transport ATP-binding protein LivF"
    },
    {
     "id": "UniProtKB:P0A9S7",
     "label": "High-affinity branched-chain amino acid transport ATP-binding protein LivG"
    },
    {
     "id": "UniProtKB:P0AEX7",
     "label": "High-affinity branched-chain amino acid transport system permease protein LivH"
    },
    {
     "id": "UniProtKB:P22729",
     "label": "High-affinity branched-chain amino acid transport system permease protein LivM"
    },
    {
     "id": "UniProtKB:P0AD96",
     "label": "Leu/Ile/Val-binding protein"
    },
    {
     "id": "UniProtKB:P0AAD8",
     "label": "Threonine/serine transporter TdcC"
    },
    {
     "id": "UniProtKB:Q47129",
     "label": "Transcriptional activator FeaR"
    },
    {
     "id": "UniProtKB:P0ACJ0",
     "label": "Leucine-responsive regulatory protein"
    },
    {
     "id": "UniProtKB:P0A9E5",
     "label": "Fumarate and nitrate reduction regulatory protein"
    },
    {
     "id": "UniProtKB:P0AF63",
     "label": "HTH-type transcriptional repressor NsrR"
    },
    {
     "id": "UniProtKB:P0A769",
     "label": "Divalent metal cation transporter MntH"
    },
    {
     "id": "UniProtKB:P0ABT2",
     "label": "DNA protection during starvation protein"
    },
    {
     "id": "NCBIProtein:AAB18566.1",
     "label": "hypothetical protein [Escherichia coli str. K-12 substr. MG1655]"
    },
    {
     "id": "Entrez:948139",
     "label": "tdh"
    },
    {
     "id": "Entrez:945939",
     "label": "tynA"
    },
    {
     "id": "Entrez:945941",
     "label": "feaR"
    },
    {
     "id": "Entrez:947971",
     "label": "livJ"
    },
    {
     "id": "Entrez:947961",
     "label": "livF"
    },
    {
     "id": "Entrez:947967",
     "label": "livG"
    },
    {
     "id": "Entrez:947965",
     "label": "livH"
    },
    {
     "id": "Entrez:947966",
     "label": "livM"
    }
   ],
   "reactions": [
    "RHEA:13162",
    "RHEA:25654",
    "RHEA:28187",
    "RHEA:70001",
    "RHEA:28885",
    "MetaCyc:THREOCAT-PWY",
    "MetaCyc:PWY-5386",
    "PathBank:SMP0000837",
    "GO:0015195"
   ]
  },
  {
   "id": "MetaCyc:TRESYN-PWY",
   "label": "trehalose biosynthesis I",
   "pathway_type": "compatible-solute-biosynthesis",
   "page": "records/MetaCyc_TRESYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_TRESYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.4.1.15",
     "label": "alpha,alpha-trehalose-phosphate synthase (UDP-forming)"
    },
    {
     "id": "EC:3.1.3.12",
     "label": "trehalose-phosphatase"
    },
    {
     "id": "UniProtKB:P31677",
     "label": "Trehalose-6-phosphate synthase"
    },
    {
     "id": "UniProtKB:P31678",
     "label": "Trehalose-6-phosphate phosphatase"
    }
   ],
   "reactions": [
    "RHEA:18890",
    "RHEA:23421"
   ]
  },
  {
   "id": "MetaCyc:TRPSYN-PWY",
   "label": "L-tryptophan biosynthesis",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_TRPSYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_TRPSYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:4.1.3.27",
     "label": "anthranilate synthase"
    },
    {
     "id": "EC:2.4.2.18",
     "label": "anthranilate phosphoribosyltransferase"
    },
    {
     "id": "EC:5.3.1.24",
     "label": "phosphoribosylanthranilate isomerase"
    },
    {
     "id": "EC:4.1.1.48",
     "label": "indole-3-glycerol-phosphate synthase"
    },
    {
     "id": "EC:4.2.1.20",
     "label": "tryptophan synthase"
    },
    {
     "id": "UniProtKB:P00895",
     "label": "Anthranilate synthase component 1"
    },
    {
     "id": "UniProtKB:P00904",
     "label": "Bifunctional protein TrpGD"
    },
    {
     "id": "UniProtKB:P00909",
     "label": "Tryptophan biosynthesis protein TrpCF"
    },
    {
     "id": "UniProtKB:P0A877",
     "label": "Tryptophan synthase alpha chain"
    },
    {
     "id": "UniProtKB:P0A879",
     "label": "Tryptophan synthase beta chain"
    }
   ],
   "reactions": [
    "RHEA:21733",
    "RHEA:11770",
    "RHEA:21541",
    "RHEA:23477",
    "RHEA:14082",
    "RHEA:26435"
   ]
  },
  {
   "id": "MetaCyc:TYRSYN",
   "label": "L-tyrosine biosynthesis I",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_TYRSYN.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_TYRSYN.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:5.4.99.5",
     "label": "chorismate mutase"
    },
    {
     "id": "EC:1.3.1.12",
     "label": "prephenate dehydrogenase"
    },
    {
     "id": "EC:2.6.1.57",
     "label": "aromatic-amino-acid transaminase"
    },
    {
     "id": "UniProtKB:P07023",
     "label": "T-protein"
    },
    {
     "id": "UniProtKB:P0A9J8",
     "label": "Bifunctional chorismate mutase/prephenate dehydratase"
    }
   ],
   "reactions": [
    "RHEA:13898",
    "RHEA:13870",
    "RHEA:15095"
   ]
  },
  {
   "id": "MetaCyc:VALSYN-PWY",
   "label": "L-valine biosynthesis",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/MetaCyc_VALSYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_VALSYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:2.2.1.6",
     "label": "acetolactate synthase"
    },
    {
     "id": "EC:1.1.1.86",
     "label": "ketol-acid reductoisomerase (NADP(+))"
    },
    {
     "id": "EC:4.2.1.9",
     "label": "dihydroxy-acid dehydratase"
    },
    {
     "id": "EC:2.6.1.42",
     "label": "branched-chain-amino-acid transaminase"
    },
    {
     "id": "UniProtKB:P00893",
     "label": "Acetolactate synthase isozyme 3 large subunit"
    },
    {
     "id": "UniProtKB:P00894",
     "label": "Acetolactate synthase isozyme 3 small subunit"
    },
    {
     "id": "UniProtKB:P05791",
     "label": "Dihydroxy-acid dehydratase"
    },
    {
     "id": "UniProtKB:P05793",
     "label": "Ketol-acid reductoisomerase (NADP(+))"
    },
    {
     "id": "UniProtKB:P08142",
     "label": "Acetolactate synthase isozyme 1 large subunit"
    },
    {
     "id": "UniProtKB:P0AB80",
     "label": "Branched-chain-amino-acid aminotransferase"
    },
    {
     "id": "UniProtKB:P0ADF8",
     "label": "Acetolactate synthase isozyme 1 small subunit"
    },
    {
     "id": "UniProtKB:P0ADG1",
     "label": "Acetolactate synthase isozyme 2 small subunit"
    }
   ],
   "reactions": [
    "RHEA:25250",
    "RHEA:22070",
    "RHEA:24810",
    "RHEA:24815"
   ]
  },
  {
   "id": "MetaCyc:XYLCAT-PWY",
   "label": "D-xylose degradation I",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/MetaCyc_XYLCAT-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/MetaCyc_XYLCAT-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
   "proteins": [
    {
     "id": "EC:5.3.1.5",
     "label": "xylose isomerase"
    },
    {
     "id": "EC:2.7.1.17",
     "label": "xylulokinase"
    },
    {
     "id": "UniProtKB:P00944",
     "label": "Xylose isomerase"
    },
    {
     "id": "UniProtKB:P09099",
     "label": "Xylulose kinase"
    }
   ],
   "reactions": [
    "RHEA:10965",
    "RHEA:22817"
   ]
  },
  {
   "id": "PathBank:SMP0002038",
   "label": "Pyrimidine Ribonucleosides Degradation",
   "pathway_type": "pyrimidine-ribonucleoside-catabolism",
   "page": "records/PathBank_SMP0002038.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/PathBank_SMP0002038.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P08331",
     "label": "2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase"
    },
    {
     "id": "UniProtKB:P0ABF6",
     "label": "Cytidine deaminase"
    },
    {
     "id": "UniProtKB:P12758",
     "label": "Uridine phosphorylase"
    },
    {
     "id": "UniProtKB:P0A6K6",
     "label": "Phosphopentomutase"
    },
    {
     "id": "UniProtKB:P0AFF4",
     "label": "Nucleoside permease NupG"
    }
   ],
   "reactions": [
    "RHEA:27879",
    "RHEA:27891",
    "RHEA:16070",
    "RHEA:24389",
    "RHEA:18794",
    "RHEA:29953",
    "RHEA:29985"
   ]
  },
  {
   "id": "PathBank:SMP0002051",
   "label": "L-Carnitine Degradation I",
   "pathway_type": "anaerobic-carnitine-catabolism",
   "page": "records/PathBank_SMP0002051.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/PathBank_SMP0002051.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P31552",
     "label": "Crotonobetaine/carnitine--CoA ligase"
    },
    {
     "id": "UniProtKB:P31551",
     "label": "Carnitinyl-CoA dehydratase"
    },
    {
     "id": "UniProtKB:P60584",
     "label": "Crotonobetainyl-CoA reductase"
    },
    {
     "id": "UniProtKB:P31572",
     "label": "L-carnitine CoA-transferase"
    }
   ],
   "reactions": [
    "RHEA:28515",
    "RHEA:28339",
    "RHEA:51586",
    "RHEA:28419"
   ]
  },
  {
   "id": "PathBank:SMP0002067",
   "label": "Putrescine Degradation II",
   "pathway_type": "polyamine-catabolism",
   "page": "records/PathBank_SMP0002067.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/PathBank_SMP0002067.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P78061",
     "label": "Gamma-glutamylputrescine synthetase PuuA"
    },
    {
     "id": "UniProtKB:P37906",
     "label": "Gamma-glutamylputrescine oxidoreductase"
    },
    {
     "id": "UniProtKB:P23883",
     "label": "Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase"
    },
    {
     "id": "UniProtKB:P76038",
     "label": "Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD"
    }
   ],
   "reactions": [
    "RHEA:13634",
    "RHEA:28415",
    "RHEA:28411",
    "RHEA:19738"
   ]
  },
  {
   "id": "PathBank:SMP0002077",
   "label": "Methylphosphonate Degradation I",
   "pathway_type": "organophosphonate-catabolism",
   "page": "records/PathBank_SMP0002077.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/PathBank_SMP0002077.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P16685",
     "label": "Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnG"
    },
    {
     "id": "UniProtKB:P16686",
     "label": "Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnH"
    },
    {
     "id": "UniProtKB:P16687",
     "label": "Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI"
    },
    {
     "id": "UniProtKB:P16679",
     "label": "Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL"
    },
    {
     "id": "UniProtKB:P16689",
     "label": "Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase"
    },
    {
     "id": "UniProtKB:P16688",
     "label": "Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P lyase"
    },
    {
     "id": "UniProtKB:P16692",
     "label": "Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase"
    }
   ],
   "reactions": [
    "RHEA:34680",
    "RHEA:34684",
    "RHEA:34708",
    "RHEA:34796"
   ]
  },
  {
   "id": "PathBank:SMP0002081",
   "label": "Adenine and Adenosine Salvage I",
   "pathway_type": "purine-salvage",
   "page": "records/PathBank_SMP0002081.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/PathBank_SMP0002081.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    },
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P31466",
     "label": "Adenine permease AdeP"
    },
    {
     "id": "UniProtKB:P0ABP8",
     "label": "Purine nucleoside phosphorylase DeoD-type"
    },
    {
     "id": "UniProtKB:P22333",
     "label": "Adenosine deaminase"
    },
    {
     "id": "UniProtKB:P0A9M5",
     "label": "Xanthine-guanine phosphoribosyltransferase"
    },
    {
     "id": "UniProtKB:P0A9M2",
     "label": "Hypoxanthine phosphoribosyltransferase"
    },
    {
     "id": "Entrez:948224",
     "label": "adeP"
    },
    {
     "id": "Entrez:945851",
     "label": "add"
    }
   ],
   "reactions": [
    "PathBank:SMP0002081/Transports/505",
    "RHEA:27644",
    "RHEA:24409",
    "RHEA:27647",
    "RHEA:17975"
   ]
  },
  {
   "id": "PathBank:SMP0002083",
   "label": "Adenine and Adenosine Salvage II",
   "pathway_type": "purine-nucleotide-salvage",
   "page": "records/PathBank_SMP0002083.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/PathBank_SMP0002083.html",
   "taxa": [
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    },
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0ABP8",
     "label": "Purine nucleoside phosphorylase DeoD-type"
    },
    {
     "id": "UniProtKB:P22333",
     "label": "Adenosine deaminase"
    },
    {
     "id": "UniProtKB:P0AEW6",
     "label": "Guanosine-inosine kinase"
    },
    {
     "id": "UniProtKB:P31466",
     "label": "Adenine permease AdeP"
    },
    {
     "id": "UniProtKB:P0ACP7",
     "label": "HTH-type transcriptional repressor PurR"
    },
    {
     "id": "Entrez:948224",
     "label": "adeP"
    },
    {
     "id": "Entrez:945851",
     "label": "add"
    }
   ],
   "reactions": [
    "RHEA:27644",
    "RHEA:24409",
    "RHEA:21141",
    "PathBank:SMP0002083/Transports/505",
    "PathBank:SMP0000809"
   ]
  },
  {
   "id": "PathBank:SMP0002089",
   "label": "Purine Deoxyribonucleosides Degradation",
   "pathway_type": "purine-deoxyribonucleoside-catabolism",
   "page": "records/PathBank_SMP0002089.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/PathBank_SMP0002089.html",
   "taxa": [
    {
     "id": "NCBITaxon:511145",
     "label": "Escherichia coli str. K-12 substr. MG1655"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P22333",
     "label": "Adenosine deaminase"
    },
    {
     "id": "UniProtKB:P0ABP8",
     "label": "Purine nucleoside phosphorylase DeoD-type"
    },
    {
     "id": "UniProtKB:P0A6K6",
     "label": "Phosphopentomutase"
    },
    {
     "id": "UniProtKB:P0A6L0",
     "label": "Deoxyribose-phosphate aldolase"
    }
   ],
   "reactions": [
    "RHEA:28191",
    "RHEA:27743",
    "RHEA:27751",
    "RHEA:27739",
    "RHEA:27659",
    "RHEA:12822"
   ]
  },
  {
   "id": "PathBank:SMP0002097",
   "label": "Spermidine Biosynthesis and Metabolism",
   "pathway_type": "polyamine-biosynthesis-and-metabolism",
   "page": "records/PathBank_SMP0002097.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/PathBank_SMP0002097.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    },
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    },
    {
     "id": "NCBITaxon:679895",
     "label": "Escherichia coli BW25113"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P0A7F6",
     "label": "S-adenosylmethionine decarboxylase proenzyme"
    },
    {
     "id": "UniProtKB:P09158",
     "label": "Polyamine aminopropyltransferase"
    },
    {
     "id": "UniProtKB:P0AF12",
     "label": "5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase"
    },
    {
     "id": "UniProtKB:P0AES0",
     "label": "Bifunctional glutathionylspermidine synthetase/amidase"
    }
   ],
   "reactions": [
    "PathBank:SMP0002097/Reactions/5165",
    "PathBank:SMP0002097/Reactions/5166",
    "PathBank:SMP0002097/Reactions/5167",
    "PathBank:SMP0002097/Reactions/1960116",
    "PathBank:SMP0002097/Transports/511",
    "PathBank:SMP0002097/SubPathwayInteractions/553236"
   ]
  },
  {
   "id": "PathBank:SMP0002123",
   "label": "BaeSR Two-Component Signal Transduction System",
   "pathway_type": "two-component-phosphotransfer-signaling",
   "page": "records/PathBank_SMP0002123.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/PathBank_SMP0002123.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    },
    {
     "id": "NCBITaxon:83333",
     "label": "Escherichia coli K-12"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P30847",
     "label": "Signal transduction histidine-protein kinase BaeS"
    },
    {
     "id": "UniProtKB:P69228",
     "label": "Transcriptional regulatory protein BaeR"
    }
   ],
   "reactions": [
    "PathBank:SMP0002123/Reactions/6144",
    "PathBank:SMP0002123/Reactions/179009"
   ]
  },
  {
   "id": "PathBank:SMP0002406",
   "label": "Riboneogenesis",
   "pathway_type": "ribose-phosphate-biosynthesis",
   "page": "records/PathBank_SMP0002406.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/PathBank_SMP0002406.html",
   "taxa": [
    {
     "id": "NCBITaxon:4932",
     "label": "Saccharomyces cerevisiae"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P23254",
     "label": "Transketolase 1"
    },
    {
     "id": "UniProtKB:P33315",
     "label": "Transketolase 2"
    },
    {
     "id": "UniProtKB:P14540",
     "label": "Fructose-bisphosphate aldolase"
    },
    {
     "id": "UniProtKB:P36136",
     "label": "Sedoheptulose 1,7-bisphosphatase"
    },
    {
     "id": "UniProtKB:P46969",
     "label": "Ribulose-phosphate 3-epimerase"
    },
    {
     "id": "UniProtKB:Q12189",
     "label": "Ribose-5-phosphate isomerase"
    }
   ],
   "reactions": [
    "RHEA:27628",
    "RHEA:30168",
    "RHEA:17462",
    "RHEA:10509",
    "RHEA:13679",
    "RHEA:14659"
   ]
  },
  {
   "id": "Reactome:R-MTU-868688",
   "label": "Mycobacterium tuberculosis trehalose biosynthesis",
   "pathway_type": "biopax-pathway",
   "page": "records/Reactome_R-MTU-868688.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/Reactome_R-MTU-868688.html",
   "taxa": [
    {
     "id": "NCBITaxon:1773",
     "label": "Mycobacterium tuberculosis"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P9WN11",
     "label": "OtsA"
    },
    {
     "id": "UniProtKB:P9WFZ5",
     "label": "OtsB"
    },
    {
     "id": "UniProtKB:P9WQ19",
     "label": "TreS"
    },
    {
     "id": "UniProtKB:P9WQ21",
     "label": "TreY"
    },
    {
     "id": "UniProtKB:P9WQ23",
     "label": "TreZ"
    }
   ],
   "reactions": [
    "Reactome:R-MTU-868622",
    "Reactome:R-MTU-868608",
    "Reactome:R-MTU-868709",
    "Reactome:R-MTU-868658",
    "Reactome:R-MTU-868657"
   ]
  },
  {
   "id": "Reactome:R-MTU-879299",
   "label": "Mycothiol biosynthesis",
   "pathway_type": "biopax-pathway",
   "page": "records/Reactome_R-MTU-879299.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/Reactome_R-MTU-879299.html",
   "taxa": [
    {
     "id": "NCBITaxon:1773",
     "label": "Mycobacterium tuberculosis"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P9WKI1",
     "label": "Ino1"
    },
    {
     "id": "UniProtKB:P9WMY7",
     "label": "MshA"
    },
    {
     "id": "UniProtKB:P9WJN1",
     "label": "mca"
    },
    {
     "id": "UniProtKB:P9WJM9",
     "label": "MshC"
    },
    {
     "id": "UniProtKB:P9WJM7",
     "label": "MshD"
    },
    {
     "id": "UniProtKB:P9WJN3",
     "label": "MshB"
    }
   ],
   "reactions": [
    "Reactome:R-MTU-879331",
    "Reactome:R-MTU-879298",
    "Reactome:R-MTU-879274",
    "Reactome:R-MTU-879327",
    "Reactome:R-MTU-879319",
    "Reactome:R-MTU-879248",
    "RHEA:26180"
   ]
  },
  {
   "id": "Reactome:R-MTU-879325",
   "label": "mycothiol S-conjugate catabolism",
   "pathway_type": "biopax-pathway",
   "page": "records/Reactome_R-MTU-879325.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/Reactome_R-MTU-879325.html",
   "taxa": [
    {
     "id": "NCBITaxon:1773",
     "label": "Mycobacterium tuberculosis"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:P9WJN1",
     "label": "mca"
    }
   ],
   "reactions": [
    "Reactome:R-MTU-879281"
   ]
  },
  {
   "id": "Reactome:R-MTU-936635",
   "label": "Sulfate assimilation",
   "pathway_type": "biopax-pathway",
   "page": "records/Reactome_R-MTU-936635.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/Reactome_R-MTU-936635.html",
   "taxa": [
    {
     "id": "NCBITaxon:1773",
     "label": "Mycobacterium tuberculosis"
    }
   ],
   "proteins": [],
   "reactions": [
    "Reactome:R-MTU-936667",
    "Reactome:R-MTU-936631",
    "Reactome:R-MTU-936729",
    "Reactome:R-MTU-936583",
    "Reactome:R-MTU-936659"
   ]
  },
  {
   "id": "Reactome:R-MTU-936654",
   "label": "Cysteine synthesis from O-phosphoserine",
   "pathway_type": "biopax-pathway",
   "page": "records/Reactome_R-MTU-936654.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/Reactome_R-MTU-936654.html",
   "taxa": [
    {
     "id": "NCBITaxon:1773",
     "label": "Mycobacterium tuberculosis"
    }
   ],
   "proteins": [],
   "reactions": [
    "Reactome:R-MTU-936665",
    "Reactome:R-MTU-936747"
   ]
  },
  {
   "id": "Reactome:R-MTU-936721",
   "label": "Cysteine synthesis from O-acetylserine",
   "pathway_type": "biopax-pathway",
   "page": "records/Reactome_R-MTU-936721.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/Reactome_R-MTU-936721.html",
   "taxa": [
    {
     "id": "NCBITaxon:1773",
     "label": "Mycobacterium tuberculosis"
    }
   ],
   "proteins": [],
   "reactions": [
    "Reactome:R-MTU-936655",
    "Reactome:R-MTU-936703",
    "Reactome:R-MTU-936615",
    "Reactome:R-MTU-936642"
   ]
  },
  {
   "id": "WikiPathways:WP171",
   "label": "NAD salvage pathway V",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/WikiPathways_WP171.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/WikiPathways_WP171.html",
   "taxa": [
    {
     "id": "NCBITaxon:4932",
     "label": "Saccharomyces cerevisiae"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000005735",
     "label": "NPT1"
    },
    {
     "id": "SGD:S000003005",
     "label": "PNC1"
    },
    {
     "id": "SGD:S000001116",
     "label": "QNS1"
    },
    {
     "id": "SGD:S000004320",
     "label": "NMA1"
    },
    {
     "id": "SGD:S000003242",
     "label": "NMA2"
    },
    {
     "id": "SGD:S000002200",
     "label": "SIR2"
    }
   ],
   "reactions": [
    "WikiPathways:WP171/id4b00dac6",
    "WikiPathways:WP171/id58e1978f",
    "WikiPathways:WP171/id5b2236e7",
    "WikiPathways:WP171/ide26ea2c3",
    "WikiPathways:WP171/idfac03b17"
   ]
  },
  {
   "id": "WikiPathways:WP178",
   "label": "Isoleucine degradation",
   "pathway_type": "amino-acid-degradation",
   "page": "records/WikiPathways_WP178.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/WikiPathways_WP178.html",
   "taxa": [
    {
     "id": "NCBITaxon:4932",
     "label": "Saccharomyces cerevisiae"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000003909",
     "label": "BAT2"
    },
    {
     "id": "SGD:S000001251",
     "label": "BAT1"
    },
    {
     "id": "SGD:S000004034",
     "label": "PDC1"
    },
    {
     "id": "SGD:S000002788",
     "label": "ARO10"
    },
    {
     "id": "SGD:S000003319",
     "label": "PDC6"
    },
    {
     "id": "SGD:S000004124",
     "label": "PDC5"
    },
    {
     "id": "SGD:S000002327",
     "label": "SFA1"
    },
    {
     "id": "SGD:S000000349",
     "label": "ADH5"
    },
    {
     "id": "SGD:S000003225",
     "label": "ADH4"
    }
   ],
   "reactions": [
    "WikiPathways:WP178/id59c25f71",
    "WikiPathways:WP178/idbcd10869",
    "WikiPathways:WP178/idf1c4befb"
   ]
  },
  {
   "id": "WikiPathways:WP266",
   "label": "Triglyceride biosynthesis",
   "pathway_type": "lipid-biosynthesis",
   "page": "records/WikiPathways_WP266.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/WikiPathways_WP266.html",
   "taxa": [
    {
     "id": "NCBITaxon:4932",
     "label": "Saccharomyces cerevisiae"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000002210",
     "label": "SLC1"
    },
    {
     "id": "SGD:S000005771",
     "label": "DGA1"
    },
    {
     "id": "SGD:S000000107",
     "label": "SCT1"
    },
    {
     "id": "SGD:S000004775",
     "label": "PAH1"
    },
    {
     "id": "SGD:S000001775",
     "label": "GPT2"
    },
    {
     "id": "SGD:S000002692",
     "label": "DPP1"
    },
    {
     "id": "SGD:S000002911",
     "label": "LPP1"
    },
    {
     "id": "SGD:S000005291",
     "label": "LRO1"
    }
   ],
   "reactions": [
    "WikiPathways:WP266/id1cd7ea26",
    "WikiPathways:WP266/id3bcd2f4",
    "WikiPathways:WP266/id60909eec",
    "WikiPathways:WP266/id85e34cbe",
    "WikiPathways:WP266/idc8402cc8"
   ]
  },
  {
   "id": "WikiPathways:WP287",
   "label": "Ubiquinol-6 biosynthesis from 4-hydroxybenzoate",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/WikiPathways_WP287.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/WikiPathways_WP287.html",
   "taxa": [
    {
     "id": "NCBITaxon:4932",
     "label": "Saccharomyces cerevisiae"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000003487",
     "label": "COQ6"
    },
    {
     "id": "SGD:S000005456",
     "label": "COQ3"
    },
    {
     "id": "SGD:S000005324",
     "label": "COQ2"
    },
    {
     "id": "SGD:S000005651",
     "label": "CAT5"
    },
    {
     "id": "SGD:S000004578",
     "label": "COQ5"
    }
   ],
   "reactions": [
    "WikiPathways:WP287/id1105b8d9",
    "WikiPathways:WP287/id46b5e257",
    "WikiPathways:WP287/id4c332e28",
    "WikiPathways:WP287/id55520bdd",
    "WikiPathways:WP287/id646fb25b",
    "WikiPathways:WP287/id74367dd4",
    "WikiPathways:WP287/id86d34e80",
    "WikiPathways:WP287/idac01794e"
   ]
  },
  {
   "id": "WikiPathways:WP296",
   "label": "TCA cycle - detailed",
   "pathway_type": "central-carbon-metabolism",
   "page": "records/WikiPathways_WP296.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/WikiPathways_WP296.html",
   "taxa": [
    {
     "id": "NCBITaxon:4932",
     "label": "Saccharomyces cerevisiae"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000005668",
     "label": "succinyl-CoA ligase 1"
    },
    {
     "id": "SGD:S000005284",
     "label": "citrate synthase 1"
    },
    {
     "id": "SGD:S000005486",
     "label": "cytoplasmic malate dehydrogenase"
    },
    {
     "id": "SGD:S000001624",
     "label": "succinate dehydrogenase 3"
    },
    {
     "id": "SGD:S000001631",
     "label": "succinate dehydrogenase 1"
    },
    {
     "id": "SGD:S000001568",
     "label": "mitochondrial malate dehydrogenase"
    },
    {
     "id": "SGD:S000000598",
     "label": "citrate synthase 2"
    },
    {
     "id": "SGD:S000004295",
     "label": "aconitase"
    },
    {
     "id": "SGD:S000004982",
     "label": "isocitrate dehydrogenase 1"
    },
    {
     "id": "SGD:S000003476",
     "label": "succinyl-CoA ligase 2"
    },
    {
     "id": "SGD:S000006183",
     "label": "fumarate hydratase"
    },
    {
     "id": "SGD:S000003736",
     "label": "aconitate hydratase"
    },
    {
     "id": "SGD:S000005662",
     "label": "isocitrate dehydrogenase 2"
    },
    {
     "id": "SGD:S000002585",
     "label": "succinate dehydrogenase 4"
    },
    {
     "id": "SGD:S000006205",
     "label": "citrate synthase 3"
    },
    {
     "id": "SGD:S000002236",
     "label": "malate dehydrogenase"
    },
    {
     "id": "SGD:S000001387",
     "label": "2-ketoglutarate dehydrogenase"
    },
    {
     "id": "SGD:S000002555",
     "label": "dihydrolipoyl transsuccinylase"
    },
    {
     "id": "SGD:S000003964",
     "label": "succinate dehydrogenase 2"
    },
    {
     "id": "SGD:S000001876",
     "label": "dihydrolipoamide dehydrogenase"
    }
   ],
   "reactions": [
    "WikiPathways:WP296/b7797",
    "WikiPathways:WP296/bec38",
    "WikiPathways:WP296/c084d",
    "WikiPathways:WP296/id21c76d83",
    "WikiPathways:WP296/id238f9689",
    "WikiPathways:WP296/id718be16e",
    "WikiPathways:WP296/id892d5e82",
    "WikiPathways:WP296/ida3b8a465",
    "WikiPathways:WP296/idaf5b761e"
   ]
  },
  {
   "id": "WikiPathways:WP392",
   "label": "Glutathione-glutaredoxin redox reaction",
   "pathway_type": "glutathione-redox",
   "page": "records/WikiPathways_WP392.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/WikiPathways_WP392.html",
   "taxa": [
    {
     "id": "NCBITaxon:4932",
     "label": "Saccharomyces cerevisiae"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000003983",
     "label": "GTT2"
    },
    {
     "id": "SGD:S000001477",
     "label": "GTT1"
    },
    {
     "id": "SGD:S000001509",
     "label": "GPX1"
    },
    {
     "id": "SGD:S000000448",
     "label": "GPX2"
    },
    {
     "id": "SGD:S000006012",
     "label": "GLR1"
    },
    {
     "id": "SGD:S000001476",
     "label": "HYR1"
    }
   ],
   "reactions": [
    "WikiPathways:WP392/id3206f739",
    "WikiPathways:WP392/id8cc08cdf",
    "WikiPathways:WP392/idb13bbbe"
   ]
  },
  {
   "id": "WikiPathways:WP478",
   "label": "Glycogen catabolism",
   "pathway_type": "glycogen-catabolism",
   "page": "records/WikiPathways_WP478.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/WikiPathways_WP478.html",
   "taxa": [
    {
     "id": "NCBITaxon:4932",
     "label": "Saccharomyces cerevisiae"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000004711",
     "label": "PGM2"
    },
    {
     "id": "SGD:S000001610",
     "label": "PGM1"
    },
    {
     "id": "SGD:S000006364",
     "label": "GPH1"
    }
   ],
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    "WikiPathways:WP478/id5442c585"
   ]
  },
  {
   "id": "WikiPathways:WP5019",
   "label": "Acetogenesis",
   "pathway_type": "acetogenesis",
   "page": "records/WikiPathways_WP5019.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/WikiPathways_WP5019.html",
   "taxa": [
    {
     "id": "NCBITaxon:33952",
     "label": "Acetobacterium woodii"
    }
   ],
   "proteins": [
    {
     "id": "UniProtKB:H6LB59",
     "label": "FdhF1"
    },
    {
     "id": "UniProtKB:H6LBX4",
     "label": "Fhs1"
    },
    {
     "id": "UniProtKB:H6LB62",
     "label": "HycB2"
    },
    {
     "id": "UniProtKB:H6LB60",
     "label": "HycB1"
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    {
     "id": "UniProtKB:H6LD21",
     "label": "AcsA"
    },
    {
     "id": "UniProtKB:H6LFG3",
     "label": "HydA1"
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    {
     "id": "UniProtKB:H6LB64",
     "label": "HycB3"
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    {
     "id": "UniProtKB:H6LB65",
     "label": "HydA2"
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    {
     "id": "UniProtKB:H6LFG4",
     "label": "HydB"
    },
    {
     "id": "UniProtKB:H6LB61",
     "label": "FdhF2"
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    {
     "id": "UniProtKB:H6LBX6",
     "label": "FolD"
    },
    {
     "id": "UniProtKB:H6LBX5",
     "label": "FchA"
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    {
     "id": "UniProtKB:H6LD20",
     "label": "AcsE"
    },
    {
     "id": "UniProtKB:H6LD18",
     "label": "AcsD"
    },
    {
     "id": "UniProtKB:H6LD19",
     "label": "AcsC"
    },
    {
     "id": "UniProtKB:H6LD23",
     "label": "AcsB1"
    },
    {
     "id": "UniProtKB:H6LJY6",
     "label": "Pta"
    },
    {
     "id": "UniProtKB:H6LBE7",
     "label": "AckA"
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   ],
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    "WikiPathways:WP5019/idf6f6d75"
   ]
  },
  {
   "id": "WikiPathways:WP5060",
   "label": "Peptidoglycan cytoplasmic synthesis and recycling pathways",
   "pathway_type": "cell-wall-biosynthesis",
   "page": "records/WikiPathways_WP5060.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/WikiPathways_WP5060.html",
   "taxa": [
    {
     "id": "NCBITaxon:562",
     "label": "Escherichia coli"
    }
   ],
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    {
     "id": "UniProtKB:P17169",
     "label": "glmS"
    },
    {
     "id": "UniProtKB:P0ACC7",
     "label": "glmU"
    },
    {
     "id": "UniProtKB:P31120",
     "label": "glmM"
    },
    {
     "id": "UniProtKB:P11880",
     "label": "murF"
    },
    {
     "id": "UniProtKB:P76577",
     "label": "Penicillin-binding protein 1C"
    },
    {
     "id": "UniProtKB:P02919",
     "label": "Penicillin-binding protein 1B"
    },
    {
     "id": "UniProtKB:P60932",
     "label": "Undecaprenyl-diphosphatase"
    },
    {
     "id": "UniProtKB:P02918",
     "label": "Penicillin-binding protein 1A"
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    {
     "id": "UniProtKB:Q2TL65",
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    },
    {
     "id": "UniProtKB:P0AD68",
     "label": "Penicillin-binding protein 3 (Peptidoglycan D,D-transpeptidase FtsI)"
    },
    {
     "id": "UniProtKB:P22188",
     "label": "murE"
    },
    {
     "id": "UniProtKB:P14900",
     "label": "murD"
    },
    {
     "id": "UniProtKB:P17952",
     "label": "murC"
    },
    {
     "id": "UniProtKB:P08373",
     "label": "murB"
    },
    {
     "id": "UniProtKB:P0A749",
     "label": "murA"
    },
    {
     "id": "UniProtKB:P17443",
     "label": "murG"
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    {
     "id": "UniProtKB:P0A6W3",
     "label": "mraY"
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    {
     "id": "UniProtKB:P07862",
     "label": "ddlB"
    },
    {
     "id": "UniProtKB:P29012",
     "label": "dadX"
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    {
     "id": "UniProtKB:P0A6B4",
     "label": "alr"
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    {
     "id": "UniProtKB:P22634",
     "label": "murI"
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    {
     "id": "UniProtKB:P0AE16",
     "label": "ampG"
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    {
     "id": "UniProtKB:P37773",
     "label": "mpl"
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    {
     "id": "UniProtKB:P0AF16",
     "label": "murJ"
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    {
     "id": "UniProtKB:P0ABG4",
     "label": "ftsW"
    },
    {
     "id": "UniProtKB:P46022",
     "label": "mtgA"
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    {
     "id": "UniProtKB:P77272",
     "label": "murP"
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    {
     "id": "UniProtKB:P77570",
     "label": "anmK"
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    {
     "id": "UniProtKB:P76535",
     "label": "murQ"
    },
    {
     "id": "UniProtKB:P0AF18",
     "label": "nagA"
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    {
     "id": "UniProtKB:P0A759",
     "label": "nagB"
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    {
     "id": "UniProtKB:P75959",
     "label": "nagK"
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    {
     "id": "UniProtKB:P75949",
     "label": "nagZ"
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    {
     "id": "UniProtKB:P13016",
     "label": "1,6-anhydro-N-acetylmuramyl-L-alanine amidase (AmpD)"
    },
    {
     "id": "UniProtKB:P76008",
     "label": "Murein tetrapeptide carboxypeptidase (LdcA)"
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     "id": "NCBITaxon:4932",
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     "id": "SGD:S000000210",
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    {
     "id": "SGD:S000004862",
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    {
     "id": "SGD:S000003251",
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   ],
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    {
     "id": "SGD:S000002788",
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     "id": "SGD:S000003170",
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    "WikiPathways:WP5587/idf107e51d"
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     "id": "NCBITaxon:4932",
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  },
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   "id": "gomodel:6882d2b800000609",
   "label": "lipid IV(A) biosynthesis pathway",
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     "id": "NCBITaxon:83333",
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   "id": "gomodel:YeastPathways_AERO-GLYCEROL-CAT-PWY",
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   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_AERO-GLYCEROL-CAT-PWY.html",
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     "id": "NCBITaxon:559292",
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     "id": "SGD:S000001024",
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   "id": "gomodel:YeastPathways_ARGSPECAT-PWY",
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     "id": "NCBITaxon:559292",
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     "id": "SGD:S000004136",
     "label": "SPE4 Scer"
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   ],
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  },
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   "id": "gomodel:YeastPathways_ARGSYNBSUB-PWY",
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     "id": "NCBITaxon:559292",
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   ],
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     "id": "SGD:S000217863",
     "label": "CPX-579 Scer"
    },
    {
     "id": "SGD:S000003870",
     "label": "CPA2 Scer"
    },
    {
     "id": "SGD:S000000871",
     "label": "ARG56 Scer"
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    {
     "id": "SGD:S000003607",
     "label": "ARG2 Scer"
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    {
     "id": "SGD:S000004666",
     "label": "ARG7 Scer"
    },
    {
     "id": "SGD:S000001060",
     "label": "ARG4 Scer"
    },
    {
     "id": "SGD:S000005419",
     "label": "ARG1 Scer"
    },
    {
     "id": "SGD:S000005500",
     "label": "ARG8 Scer"
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    {
     "id": "SGD:S000005829",
     "label": "CPA1 Scer"
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   ],
   "reactions": [
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   "id": "gomodel:YeastPathways_ASPARAGINE-BIOSYNTHESIS-1",
   "label": "L-asparagine biosynthesis I",
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     "id": "NCBITaxon:559292",
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   ],
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    {
     "id": "SGD:S000006349",
     "label": "ASN1 Scer"
    },
    {
     "id": "SGD:S000001589",
     "label": "AAT1 Scer"
    },
    {
     "id": "SGD:S000004017",
     "label": "AAT2 Scer"
    },
    {
     "id": "SGD:S000003356",
     "label": "ASN2 Scer"
    }
   ],
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   "id": "gomodel:YeastPathways_ASPARAGINE-DEG2-PWY",
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   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_ASPARAGINE-DEG2-PWY.html",
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     "id": "NCBITaxon:559292",
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   ],
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     "id": "SGD:S000002729",
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     "id": "SGD:S000004017",
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    },
    {
     "id": "SGD:S000004147",
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    },
    {
     "id": "SGD:S000004150",
     "label": "ASP3-4 Scer"
    },
    {
     "id": "SGD:S000004148",
     "label": "ASP3-3 Scer"
    },
    {
     "id": "SGD:S000001589",
     "label": "AAT1 Scer"
    },
    {
     "id": "SGD:S000004145",
     "label": "ASP3-1 Scer"
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   ],
   "reactions": [
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   "taxa": [
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     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000004017",
     "label": "AAT2 Scer"
    },
    {
     "id": "SGD:S000001589",
     "label": "AAT1 Scer"
    },
    {
     "id": "SGD:S000003030",
     "label": "PYC1 Scer"
    },
    {
     "id": "SGD:S000000422",
     "label": "PYC2 Scer"
    }
   ],
   "reactions": [
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    "gomodel:PYRUVATE-CARBOXYLASE-RXN",
    "gomodel:YeastPathways_ASPBIO-PWY/6a4c244800002248",
    "gomodel:YeastPathways_ASPBIO-PWY/6a4c244800002268"
   ]
  },
  {
   "id": "gomodel:YeastPathways_BSUBPOLYAMSYN-PWY",
   "label": "spermidine biosynthesis I",
   "pathway_type": "polyamine-biosynthesis",
   "page": "records/gomodel_YeastPathways_BSUBPOLYAMSYN-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_BSUBPOLYAMSYN-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000006273",
     "label": "SPE3 Scer"
    },
    {
     "id": "SGD:S000005412",
     "label": "SPE2 Scer"
    }
   ],
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    "gomodel:SPERMIDINESYN-RXN"
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   "id": "gomodel:YeastPathways_CITRUL-BIO2-PWY",
   "label": "citrulline biosynthesis",
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     "id": "NCBITaxon:559292",
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   ],
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    {
     "id": "SGD:S000217863",
     "label": "CPX-579 Scer"
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    {
     "id": "SGD:S000003624",
     "label": "ARG3 Scer"
    },
    {
     "id": "SGD:S000003870",
     "label": "CPA2 Scer"
    },
    {
     "id": "SGD:S000005829",
     "label": "CPA1 Scer"
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   ],
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   "id": "gomodel:YeastPathways_DETOX1-PWY",
   "label": "superoxide radicals degradation",
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   ],
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    {
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     "label": "SOD1 Scer"
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    {
     "id": "SGD:S000002664",
     "label": "CTA1 Scer"
    },
    {
     "id": "SGD:S000003320",
     "label": "CTT1 Scer"
    },
    {
     "id": "SGD:S000001050",
     "label": "SOD2 Scer"
    }
   ],
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  },
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   "id": "gomodel:YeastPathways_FASYN-ELONG2-PWY",
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   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_FASYN-ELONG2-PWY.html",
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   ],
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    {
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     "label": "FAS2 Scer"
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     "id": "SGD:S000001538",
     "label": "OAR1 Scer"
    },
    {
     "id": "SGD:S000000863",
     "label": "CEM1 Scer"
    },
    {
     "id": "SGD:S000001665",
     "label": "FAS1 Scer"
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    {
     "id": "SGD:S000003780",
     "label": "TES1 Scer"
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   ],
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   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_GLUCONEO-PWY-1.html",
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     "id": "SGD:S000001512",
     "label": "MAE1 Scer"
    },
    {
     "id": "SGD:S000003424",
     "label": "TDH3 Scer"
    },
    {
     "id": "SGD:S000000605",
     "label": "PGK1 Scer"
    },
    {
     "id": "SGD:S000005486",
     "label": "MDH2 Scer"
    },
    {
     "id": "SGD:S000001217",
     "label": "ENO2 Scer"
    },
    {
     "id": "SGD:S000001805",
     "label": "PCK1 Scer"
    },
    {
     "id": "SGD:S000004369",
     "label": "FBP1 Scer"
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    {
     "id": "SGD:S000003486",
     "label": "ENO1 Scer"
    },
    {
     "id": "SGD:S000000422",
     "label": "PYC2 Scer"
    },
    {
     "id": "SGD:S000003030",
     "label": "PYC1 Scer"
    },
    {
     "id": "SGD:S000000400",
     "label": "PGI1 Scer"
    },
    {
     "id": "SGD:S000003588",
     "label": "TDH1 Scer"
    },
    {
     "id": "SGD:S000001543",
     "label": "FBA1 Scer"
    },
    {
     "id": "SGD:S000003769",
     "label": "TDH2 Scer"
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   ],
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    "gomodel:YeastPathways_GLUCONEO-PWY-1/6a4c244800005125",
    "gomodel:YeastPathways_GLUCONEO-PWY-1/6a4c244800005138",
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   "label": "glycine cleavage",
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     "id": "NCBITaxon:559292",
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    {
     "id": "SGD:S000001876",
     "label": "LPD1 Scer"
    },
    {
     "id": "SGD:S000002426",
     "label": "GCV1 Scer"
    },
    {
     "id": "SGD:S000004801",
     "label": "GCV2 Scer"
    }
   ],
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   "id": "gomodel:YeastPathways_GLYCOLYSIS",
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     "id": "NCBITaxon:559292",
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    {
     "id": "SGD:S000004369",
     "label": "FBP1 Scer"
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    {
     "id": "SGD:S000000605",
     "label": "PGK1 Scer"
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    {
     "id": "SGD:S000218025",
     "label": "CPX-554 Scer"
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    {
     "id": "SGD:S000000400",
     "label": "PGI1 Scer"
    },
    {
     "id": "SGD:S000005874",
     "label": "PYK2 Scer"
    },
    {
     "id": "SGD:S000001543",
     "label": "FBA1 Scer"
    },
    {
     "id": "SGD:S000003486",
     "label": "ENO1 Scer"
    },
    {
     "id": "SGD:S000003588",
     "label": "TDH1 Scer"
    },
    {
     "id": "SGD:S000003769",
     "label": "TDH2 Scer"
    },
    {
     "id": "SGD:S000002457",
     "label": "TPI1 Scer"
    },
    {
     "id": "SGD:S000003424",
     "label": "TDH3 Scer"
    },
    {
     "id": "SGD:S000000036",
     "label": "CDC19 Scer"
    },
    {
     "id": "SGD:S000001217",
     "label": "ENO2 Scer"
    },
    {
     "id": "UniProtKB:P16861",
     "label": "ATP-dependent 6-phosphofructokinase subunit alpha"
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    {
     "id": "UniProtKB:P16862",
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   "id": "gomodel:YeastPathways_HEME-BIOSYNTHESIS-II",
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    {
     "id": "SGD:S000005702",
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    },
    {
     "id": "SGD:S000002454",
     "label": "HEM12 Scer"
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    {
     "id": "SGD:S000000816",
     "label": "HEM14 Scer"
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   ],
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   ]
  },
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   "id": "gomodel:YeastPathways_HEXPPSYN-PWY-2",
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   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_HEXPPSYN-PWY-2.html",
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   ],
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     "id": "SGD:S000005990",
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    {
     "id": "SGD:S000000207",
     "label": "COQ1 Scer"
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   ],
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     "id": "SGD:S000003152",
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    {
     "id": "SGD:S000000010",
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    },
    {
     "id": "SGD:S000003387",
     "label": "CYS4 Scer"
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    {
     "id": "SGD:S000003891",
     "label": "STR2 Scer"
    }
   ],
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   ]
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   "id": "gomodel:YeastPathways_HOMOCYSDEGR-PWY-1",
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   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_HOMOCYSDEGR-PWY-1.html",
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     "id": "NCBITaxon:559292",
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   ],
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     "id": "SGD:S000003387",
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    {
     "id": "SGD:S000000010",
     "label": "CYS3 Scer"
    }
   ],
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     "id": "NCBITaxon:559292",
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     "id": "SGD:S000005949",
     "label": "ERG10 Scer"
    },
    {
     "id": "SGD:S000004821",
     "label": "ERG12 Scer"
    },
    {
     "id": "SGD:S000005326",
     "label": "MVD1 Scer"
    },
    {
     "id": "SGD:S000006038",
     "label": "IDI1 Scer"
    },
    {
     "id": "SGD:S000004442",
     "label": "HMG2 Scer"
    },
    {
     "id": "SGD:S000004833",
     "label": "ERG8 Scer"
    },
    {
     "id": "SGD:S000004540",
     "label": "HMG1 Scer"
    },
    {
     "id": "SGD:S000004595",
     "label": "ERG13 Scer"
    }
   ],
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  },
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   "id": "gomodel:YeastPathways_LYSINE-AMINOAD-PWY-2",
   "label": "L-lysine biosynthesis IV",
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   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_LYSINE-AMINOAD-PWY-2.html",
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     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
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   ],
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     "id": "SGD:S000002642",
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    },
    {
     "id": "SGD:S000001356",
     "label": "LYS12 Scer"
    },
    {
     "id": "SGD:S000001473",
     "label": "LYS1 Scer"
    },
    {
     "id": "SGD:S000002289",
     "label": "LYS21 Scer"
    },
    {
     "id": "SGD:S000005333",
     "label": "LYS9 Scer"
    },
    {
     "id": "SGD:S000000319",
     "label": "LYS2 Scer"
    },
    {
     "id": "SGD:S000002341",
     "label": "LYS20 Scer"
    },
    {
     "id": "SGD:S000003170",
     "label": "ARO8 Scer"
    },
    {
     "id": "SGD:S000003736",
     "label": "ACO2 Scer"
    },
    {
     "id": "SGD:S000004295",
     "label": "ACO1 Scer"
    }
   ],
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   ]
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   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PERIPLASMA-NAD-DEGRADATION.html",
   "taxa": [
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     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
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     "id": "SGD:S000003035",
     "label": "NPY1 Scer"
    },
    {
     "id": "SGD:S000001245",
     "label": "SMN1 Scer"
    }
   ],
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    "gomodel:NADPYROPHOSPHAT-RXN"
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  },
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   "id": "gomodel:YeastPathways_PHOSLIPSYN2-PWY-1",
   "label": "phospholipid biosynthesis",
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   "page": "records/gomodel_YeastPathways_PHOSLIPSYN2-PWY-1.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PHOSLIPSYN2-PWY-1.html",
   "taxa": [
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     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
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    {
     "id": "SGD:S000003402",
     "label": "PSD2 Scer"
    },
    {
     "id": "SGD:S000005113",
     "label": "PSD1 Scer"
    },
    {
     "id": "SGD:S000003834",
     "label": "OPI3 Scer"
    },
    {
     "id": "SGD:S000000510",
     "label": "PGS1 Scer"
    },
    {
     "id": "SGD:S000001142",
     "label": "GEP4 Scer"
    },
    {
     "id": "SGD:S000002301",
     "label": "CRD1 Scer"
    },
    {
     "id": "SGD:S000000828",
     "label": "CHO1 Scer"
    },
    {
     "id": "SGD:S000003389",
     "label": "CHO2 Scer"
    }
   ],
   "reactions": [
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    "gomodel:PHOSPHASERDECARB-RXN",
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    "gomodel:RXN3O-349",
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   ]
  },
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   "id": "gomodel:YeastPathways_PROUT-PWY",
   "label": "L-proline degradation",
   "pathway_type": "amino-acid-degradation",
   "page": "records/gomodel_YeastPathways_PROUT-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PROUT-PWY.html",
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     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000004132",
     "label": "PUT1 Scer"
    },
    {
     "id": "SGD:S000001079",
     "label": "PUT2 Scer"
    }
   ],
   "reactions": [
    "gomodel:RXN-14116",
    "gomodel:RXN-14903",
    "gomodel:SPONTPRO-RXN"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-1801-1",
   "label": "formaldehyde oxidation II (glutathione-dependent)",
   "pathway_type": "formaldehyde-degradation",
   "page": "records/gomodel_YeastPathways_PWY-1801-1.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-1801-1.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000005915",
     "label": "FDH1 Scer"
    },
    {
     "id": "SGD:S000002327",
     "label": "SFA1 Scer"
    },
    {
     "id": "SGD:S000003604",
     "label": "YJL068C Scer"
    }
   ],
   "reactions": [
    "gomodel:1.2.1.2-RXN",
    "gomodel:RXN-2961",
    "gomodel:RXN-2962",
    "gomodel:S-FORMYLGLUTATHIONE-HYDROLASE-RXN"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-2301",
   "label": "myo-inositol biosynthesis",
   "pathway_type": "myo-inositol-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-2301.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-2301.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000003689",
     "label": "INO1 Scer"
    },
    {
     "id": "SGD:S000002695",
     "label": "INM2 Scer"
    },
    {
     "id": "SGD:S000001088",
     "label": "INM1 Scer"
    }
   ],
   "reactions": [
    "gomodel:MYO-INOSITOL-1-PHOSPHATE-SYNTHASE-RXN",
    "gomodel:MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN",
    "gomodel:YeastPathways_PWY-2301/6a2b236300005397"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-5041",
   "label": "S-adenosyl-L-methionine cycle II",
   "pathway_type": "amino-acid-metabolism",
   "page": "records/gomodel_YeastPathways_PWY-5041.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-5041.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000000893",
     "label": "MET6 Scer"
    },
    {
     "id": "SGD:S000004170",
     "label": "SAM1 Scer"
    },
    {
     "id": "SGD:S000000845",
     "label": "SAH1 Scer"
    },
    {
     "id": "SGD:S000002910",
     "label": "SAM2 Scer"
    }
   ],
   "reactions": [
    "gomodel:ADENOSYLHOMOCYSTEINASE-RXN",
    "gomodel:HOMOCYSMET-RXN",
    "gomodel:RXN-7605",
    "gomodel:S-ADENMETSYN-RXN",
    "gomodel:YeastPathways_PWY-5041/6a2b236300005409"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-5080-1",
   "label": "very long chain fatty acid biosynthesis I",
   "pathway_type": "lipid-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-5080-1.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-5080-1.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000000630",
     "label": "ELO2 Scer"
    },
    {
     "id": "SGD:S000002173",
     "label": "TSC13 Scer"
    },
    {
     "id": "SGD:S000000363",
     "label": "IFA38 Scer"
    },
    {
     "id": "SGD:S000004364",
     "label": "ELO3 Scer"
    },
    {
     "id": "SGD:S000003633",
     "label": "PHS1 Scer"
    }
   ],
   "reactions": [
    "gomodel:RXN3O-9811",
    "gomodel:RXN3O-9812",
    "gomodel:RXN3O-9813",
    "gomodel:RXN3O-9814",
    "gomodel:YeastPathways_PWY-5080-1/6a2b236300005423"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-5123",
   "label": "trans, trans-farnesyl diphosphate biosynthesis",
   "pathway_type": "lipid-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-5123.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-5123.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000003703",
     "label": "ERG20 Scer"
    },
    {
     "id": "SGD:S000006038",
     "label": "IDI1 Scer"
    }
   ],
   "reactions": [
    "gomodel:FPPSYN-RXN",
    "gomodel:GPPSYN-RXN",
    "gomodel:IPPISOM-RXN"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-5194-1",
   "label": "siroheme biosynthesis",
   "pathway_type": "siroheme-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-5194-1.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-5194-1.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000001777",
     "label": "MET1 Scer"
    },
    {
     "id": "SGD:S000000417",
     "label": "MET8 Scer"
    }
   ],
   "reactions": [
    "gomodel:DIMETHUROPORDEHYDROG-RXN",
    "gomodel:RXN-13403",
    "gomodel:SIROHEME-FERROCHELAT-RXN"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-5340",
   "label": "sulfate activation (for sulfonation)",
   "pathway_type": "metabolic",
   "page": "records/gomodel_YeastPathways_PWY-5340.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-5340.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000001484",
     "label": "MET14 Scer"
    },
    {
     "id": "SGD:S000003771",
     "label": "MET3 Scer"
    }
   ],
   "reactions": [
    "gomodel:ADENYLYLSULFKIN-RXN",
    "gomodel:SULFATE-ADENYLYLTRANS-RXN"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-5344",
   "label": "L-homocysteine biosynthesis",
   "pathway_type": "amino-acid-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-5344.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-5344.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000005221",
     "label": "MET2 Scer"
    },
    {
     "id": "SGD:S000004294",
     "label": "MET17 Scer"
    }
   ],
   "reactions": [
    "gomodel:ACETYLHOMOSER-CYS-RXN",
    "gomodel:HOMOSERINE-O-ACETYLTRANSFERASE-RXN"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-5651",
   "label": "L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde",
   "pathway_type": "amino-acid-degradation",
   "page": "records/gomodel_YeastPathways_PWY-5651.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-5651.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000003786",
     "label": "BNA1 Scer"
    },
    {
     "id": "SGD:S000000194",
     "label": "BNA4 Scer"
    },
    {
     "id": "SGD:S000003839",
     "label": "BNA2 Scer"
    },
    {
     "id": "SGD:S000002836",
     "label": "BNA7 Scer"
    },
    {
     "id": "SGD:S000004221",
     "label": "BNA5 Scer"
    }
   ],
   "reactions": [
    "gomodel:1.13.11.6-RXN",
    "gomodel:3-HYDROXY-KYNURENINASE-RXN",
    "gomodel:KYNURENINE-3-MONOOXYGENASE-RXN",
    "gomodel:RXN-8665",
    "gomodel:YeastPathways_PWY-5651/6a4c244800001147"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-5653",
   "label": "NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-5653.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-5653.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000001116",
     "label": "QNS1 Scer"
    },
    {
     "id": "SGD:S000001943",
     "label": "BNA6 Scer"
    },
    {
     "id": "SGD:S000003242",
     "label": "NMA2 Scer"
    },
    {
     "id": "SGD:S000004320",
     "label": "NMA1 Scer"
    }
   ],
   "reactions": [
    "gomodel:NAD-SYNTH-GLN-RXN",
    "gomodel:NICONUCADENYLYLTRAN-RXN",
    "gomodel:QUINOPRIBOTRANS-RXN",
    "gomodel:RXN-5721",
    "gomodel:YeastPathways_PWY-5653/6a4c244800000432"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-5669",
   "label": "phosphatidylethanolamine biosynthesis I",
   "pathway_type": "lipid-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-5669.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-5669.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000003402",
     "label": "PSD2 Scer"
    },
    {
     "id": "SGD:S000000828",
     "label": "CHO1 Scer"
    },
    {
     "id": "SGD:S000005113",
     "label": "PSD1 Scer"
    }
   ],
   "reactions": [
    "gomodel:PHOSPHASERDECARB-RXN",
    "gomodel:PHOSPHASERSYN-RXN",
    "gomodel:YeastPathways_PWY-5669/6a46ef0600000808"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-5670-1",
   "label": "epoxysqualene biosynthesis",
   "pathway_type": "lipid-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-5670-1.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-5670-1.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000001233",
     "label": "ERG9 Scer"
    },
    {
     "id": "SGD:S000003407",
     "label": "ERG1 Scer"
    }
   ],
   "reactions": [
    "gomodel:RXN-12263",
    "gomodel:RXN3O-9816",
    "gomodel:RXN66-281"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-5694",
   "label": "allantoin degradation to glyoxylate I",
   "pathway_type": "purine-degradation",
   "page": "records/gomodel_YeastPathways_PWY-5694.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-5694.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000001466",
     "label": "DAL1 Scer"
    },
    {
     "id": "SGD:S000001468",
     "label": "DAL2 Scer"
    },
    {
     "id": "SGD:S000001471",
     "label": "DAL3 Scer"
    }
   ],
   "reactions": [
    "gomodel:ALLANTOICASE-RXN",
    "gomodel:ALLANTOINASE-RXN",
    "gomodel:UREIDOGLYCOLATE-LYASE-RXN"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-5697",
   "label": "allantoin degradation to ureidoglycolate I (urea producing)",
   "pathway_type": "purine-degradation",
   "page": "records/gomodel_YeastPathways_PWY-5697.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-5697.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000001468",
     "label": "DAL2 Scer"
    },
    {
     "id": "SGD:S000001466",
     "label": "DAL1 Scer"
    }
   ],
   "reactions": [
    "gomodel:ALLANTOICASE-RXN",
    "gomodel:ALLANTOINASE-RXN"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-5703",
   "label": "urea degradation I",
   "pathway_type": "urea-degradation",
   "page": "records/gomodel_YeastPathways_PWY-5703.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-5703.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000000412",
     "label": "DUR12 Scer"
    }
   ],
   "reactions": [
    "gomodel:ALLOPHANATE-HYDROLASE-RXN",
    "gomodel:UREA-CARBOXYLASE-RXN"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-5760-1",
   "label": "beta-alanine biosynthesis IV",
   "pathway_type": "beta-alanine-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-5760-1.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-5760-1.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000004780",
     "label": "ALD2 Scer"
    },
    {
     "id": "SGD:S000004779",
     "label": "ALD3 Scer"
    },
    {
     "id": "SGD:S000004622",
     "label": "FMS1 Scer"
    }
   ],
   "reactions": [
    "gomodel:3-PROPANAL-DEHYDROGENASE-RXN",
    "gomodel:RXN-9015",
    "gomodel:YeastPathways_PWY-5760-1/6a46ef0600000716"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-6074-1",
   "label": "zymosterol biosynthesis",
   "pathway_type": "lipid-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-6074-1.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-6074-1.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000003292",
     "label": "ERG25 Scer"
    },
    {
     "id": "SGD:S000001049",
     "label": "ERG11 Scer"
    },
    {
     "id": "SGD:S000004090",
     "label": "ERG27 Scer"
    },
    {
     "id": "SGD:S000005224",
     "label": "ERG24 Scer"
    },
    {
     "id": "SGD:S000002969",
     "label": "ERG26 Scer"
    }
   ],
   "reactions": [
    "gomodel:RXN3O-9820",
    "gomodel:RXN3O-9821",
    "gomodel:RXN3O-9822",
    "gomodel:RXN3O-9823",
    "gomodel:RXN3O-9824",
    "gomodel:RXN3O-9825",
    "gomodel:RXN3O-9826",
    "gomodel:RXN66-306",
    "gomodel:RXN66-313",
    "gomodel:RXN66-314",
    "gomodel:RXN66-318",
    "gomodel:RXN66-319"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-6075-1",
   "label": "ergosterol biosynthesis I",
   "pathway_type": "lipid-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-6075-1.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-6075-1.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000004046",
     "label": "ERG3 Scer"
    },
    {
     "id": "SGD:S000002980",
     "label": "ERG4 Scer"
    },
    {
     "id": "SGD:S000004815",
     "label": "ERG2 Scer"
    },
    {
     "id": "SGD:S000004467",
     "label": "ERG6 Scer"
    },
    {
     "id": "SGD:S000004617",
     "label": "ERG5 Scer"
    }
   ],
   "reactions": [
    "gomodel:1.3.1.71-RXN",
    "gomodel:RXN3O-178",
    "gomodel:RXN3O-203",
    "gomodel:RXN3O-9827",
    "gomodel:RXN3O-9828"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-6147",
   "label": "6-hydroxymethyl-dihydropterin diphosphate biosynthesis I",
   "pathway_type": "folate-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-6147.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-6147.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000003499",
     "label": "FOL2 Scer"
    },
    {
     "id": "SGD:S000005200",
     "label": "FOL1 Scer"
    }
   ],
   "reactions": [
    "gomodel:DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN",
    "gomodel:GTP-CYCLOHYDRO-I-RXN",
    "gomodel:H2NEOPTERINALDOL-RXN",
    "gomodel:H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN",
    "gomodel:H2PTERIDINEPYROPHOSPHOKIN-RXN"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-6614",
   "label": "tetrahydrofolate biosynthesis",
   "pathway_type": "folate-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-6614.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-6614.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000005200",
     "label": "FOL1 Scer"
    },
    {
     "id": "SGD:S000004719",
     "label": "FOL3 Scer"
    },
    {
     "id": "SGD:S000005762",
     "label": "DFR1 Scer"
    }
   ],
   "reactions": [
    "gomodel:DIHYDROFOLATEREDUCT-RXN",
    "gomodel:DIHYDROFOLATESYNTH-RXN",
    "gomodel:H2PTEROATESYNTH-RXN"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-7176",
   "label": "UTP and CTP de novo biosynthesis",
   "pathway_type": "nucleotide-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-7176.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-7176.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000001550",
     "label": "YNK1 Scer"
    },
    {
     "id": "SGD:S000003864",
     "label": "URA8 Scer"
    },
    {
     "id": "SGD:S000000135",
     "label": "URA7 Scer"
    },
    {
     "id": "SGD:S000001507",
     "label": "URA6 Scer"
    }
   ],
   "reactions": [
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    "gomodel:RXN-12002",
    "gomodel:UDPKIN-RXN",
    "gomodel:YeastPathways_PWY-7176/6a4c244800000283"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-7219",
   "label": "adenosine ribonucleotides de novo biosynthesis",
   "pathway_type": "nucleotide-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-7219.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-7219.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000005164",
     "label": "ADE12 Scer"
    },
    {
     "id": "SGD:S000000972",
     "label": "ADK2 Scer"
    },
    {
     "id": "SGD:S000002634",
     "label": "ADK1 Scer"
    },
    {
     "id": "SGD:S000004351",
     "label": "ADE13 Scer"
    }
   ],
   "reactions": [
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    "gomodel:ADENYLOSUCCINATE-SYNTHASE-RXN",
    "gomodel:AMPSYN-RXN",
    "gomodel:YeastPathways_PWY-7219/6a4c244800000590"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-7220-1",
   "label": "adenosine deoxyribonucleotides de novo biosynthesis II",
   "pathway_type": "nucleotide-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-7220-1.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-7220-1.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000217933",
     "label": "CPX-1102 Scer"
    },
    {
     "id": "SGD:S000217934",
     "label": "CPX-1103 Scer"
    },
    {
     "id": "SGD:S000001550",
     "label": "YNK1 Scer"
    },
    {
     "id": "UniProtKB:P21524",
     "label": "Ribonucleoside-diphosphate reductase large chain 1"
    },
    {
     "id": "UniProtKB:P09938",
     "label": "Ribonucleoside-diphosphate reductase small chain 1"
    },
    {
     "id": "UniProtKB:P49723",
     "label": "Ribonucleoside-diphosphate reductase small chain 2"
    },
    {
     "id": "UniProtKB:P21672",
     "label": "Ribonucleoside-diphosphate reductase large chain 2"
    }
   ],
   "reactions": [
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    "gomodel:DADPKIN-RXN",
    "gomodel:YeastPathways_PWY-7220-1/6a2b236300005372"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-7221",
   "label": "guanosine ribonucleotides de novo biosynthesis",
   "pathway_type": "nucleotide-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY-7221.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-7221.html",
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    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000001550",
     "label": "YNK1 Scer"
    },
    {
     "id": "SGD:S000002862",
     "label": "GUK1 Scer"
    },
    {
     "id": "SGD:S000004830",
     "label": "GUA1 Scer"
    },
    {
     "id": "SGD:S000004424",
     "label": "IMD3 Scer"
    },
    {
     "id": "SGD:S000004520",
     "label": "IMD4 Scer"
    },
    {
     "id": "SGD:S000001259",
     "label": "IMD2 Scer"
    }
   ],
   "reactions": [
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    "gomodel:GMP-SYN-GLUT-RXN",
    "gomodel:GUANYL-KIN-RXN",
    "gomodel:IMP-DEHYDROG-RXN",
    "gomodel:YeastPathways_PWY-7221/6a4c244800000652",
    "gomodel:YeastPathways_PWY-7221/6a4c244800000662"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY-901",
   "label": "methylglyoxal catabolism",
   "pathway_type": "detoxification",
   "page": "records/gomodel_YeastPathways_PWY-901.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY-901.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000002680",
     "label": "GLO2 Scer"
    },
    {
     "id": "SGD:S000004463",
     "label": "GLO1 Scer"
    },
    {
     "id": "SGD:S000005566",
     "label": "GLO4 Scer"
    }
   ],
   "reactions": [
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    "gomodel:GLYOXII-RXN",
    "gomodel:YeastPathways_PWY-901/6a46ef0600000777"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY3O-123",
   "label": "dolichyl phosphate D-mannose biosynthesis",
   "pathway_type": "glycan-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY3O-123.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY3O-123.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000002213",
     "label": "PSA1 Scer"
    },
    {
     "id": "SGD:S000006387",
     "label": "DPM1 Scer"
    },
    {
     "id": "SGD:S000001849",
     "label": "SEC53 Scer"
    },
    {
     "id": "SGD:S000000805",
     "label": "PMI40 Scer"
    }
   ],
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    "gomodel:PHOSMANMUT-RXN"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY3O-15",
   "label": "chitin biosynthesis",
   "pathway_type": "cell-wall-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY3O-15.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY3O-15.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000000227",
     "label": "CHS3 Scer"
    },
    {
     "id": "SGD:S000005136",
     "label": "CHS1 Scer"
    },
    {
     "id": "SGD:S000000242",
     "label": "CHS2 Scer"
    }
   ],
   "reactions": [
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    "gomodel:YeastPathways_PWY3O-15/6a6bcaed00000871",
    "gomodel:YeastPathways_PWY3O-15/6a6bcaed00000891"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY3O-1565",
   "label": "dolichyl glucosyl phosphate biosynthesis",
   "pathway_type": "glycan-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY3O-1565.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY3O-1565.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000006148",
     "label": "ALG5 Scer"
    },
    {
     "id": "SGD:S000001518",
     "label": "UGP1 Scer"
    },
    {
     "id": "SGD:S000004711",
     "label": "PGM2 Scer"
    },
    {
     "id": "SGD:S000001610",
     "label": "PGM1 Scer"
    },
    {
     "id": "SGD:S000001004",
     "label": "YHL012W Scer"
    }
   ],
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    "gomodel:YeastPathways_PWY3O-1565/6a4c244800003258"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY3O-17",
   "label": "thiamine biosynthesis",
   "pathway_type": "cofactor-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY3O-17.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY3O-17.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000006179",
     "label": "THI21 Scer"
    },
    {
     "id": "SGD:S000005416",
     "label": "THI20 Scer"
    },
    {
     "id": "SGD:S000000296",
     "label": "PHO3 Scer"
    },
    {
     "id": "SGD:S000005669",
     "label": "THI80 Scer"
    },
    {
     "id": "SGD:S000003376",
     "label": "THI4 Scer"
    },
    {
     "id": "SGD:S000006135",
     "label": "THI6 Scer"
    },
    {
     "id": "SGD:S000002403",
     "label": "THI13 Scer"
    }
   ],
   "reactions": [
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    "gomodel:RXN3O-9804",
    "gomodel:RXNQT-4191",
    "gomodel:RXNQT-4301",
    "gomodel:THI-P-SYN-RXN",
    "gomodel:THIAMIN-PYROPHOSPHOKINASE-RXN",
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    "gomodel:YeastPathways_PWY3O-17/6a4c244800007677"
   ]
  },
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   "id": "gomodel:YeastPathways_PWY3O-1743",
   "label": "mannose degradation",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/gomodel_YeastPathways_PWY3O-1743.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY3O-1743.html",
   "taxa": [
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     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
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   ],
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    {
     "id": "SGD:S000000545",
     "label": "GLK1 Scer"
    },
    {
     "id": "SGD:S000000805",
     "label": "PMI40 Scer"
    },
    {
     "id": "SGD:S000001949",
     "label": "HXK1 Scer"
    },
    {
     "id": "SGD:S000003222",
     "label": "HXK2 Scer"
    }
   ],
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    "gomodel:YeastPathways_PWY3O-1743/6a4c244800000457"
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  },
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   "id": "gomodel:YeastPathways_PWY3O-1801",
   "label": "palmitoleate biosynthesis",
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   "page": "records/gomodel_YeastPathways_PWY3O-1801.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY3O-1801.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
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   ],
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    {
     "id": "SGD:S000003023",
     "label": "OLE1 Scer"
    },
    {
     "id": "SGD:S000003780",
     "label": "TES1 Scer"
    }
   ],
   "reactions": [
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    "gomodel:RXN-10664"
   ]
  },
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   "id": "gomodel:YeastPathways_PWY3O-214",
   "label": "tryptophan degradation",
   "pathway_type": "amino-acid-degradation",
   "page": "records/gomodel_YeastPathways_PWY3O-214.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY3O-214.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
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   ],
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    {
     "id": "SGD:S000004688",
     "label": "ADH3 Scer"
    },
    {
     "id": "SGD:S000003225",
     "label": "ADH4 Scer"
    },
    {
     "id": "SGD:S000004918",
     "label": "ADH2 Scer"
    },
    {
     "id": "SGD:S000000349",
     "label": "ADH5 Scer"
    },
    {
     "id": "SGD:S000005446",
     "label": "ADH1 Scer"
    },
    {
     "id": "SGD:S000004124",
     "label": "PDC5 Scer"
    },
    {
     "id": "SGD:S000001179",
     "label": "ARO9 Scer"
    },
    {
     "id": "SGD:S000002327",
     "label": "SFA1 Scer"
    },
    {
     "id": "SGD:S000002788",
     "label": "ARO10 Scer"
    },
    {
     "id": "SGD:S000003319",
     "label": "PDC6 Scer"
    },
    {
     "id": "SGD:S000004034",
     "label": "PDC1 Scer"
    },
    {
     "id": "SGD:S000003170",
     "label": "ARO8 Scer"
    }
   ],
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  },
  {
   "id": "gomodel:YeastPathways_PWY3O-242",
   "label": "phosphatidylinositol phosphate biosynthesis",
   "pathway_type": "lipid-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY3O-242.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY3O-242.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000001915",
     "label": "FAB1 Scer"
    },
    {
     "id": "SGD:S000002616",
     "label": "MSS4 Scer"
    },
    {
     "id": "SGD:S000001695",
     "label": "SAC1 Scer"
    },
    {
     "id": "SGD:S000005269",
     "label": "FIG4 Scer"
    },
    {
     "id": "SGD:S000003871",
     "label": "YMR1 Scer"
    },
    {
     "id": "SGD:S000005050",
     "label": "INP52 Scer"
    },
    {
     "id": "SGD:S000003636",
     "label": "LSB6 Scer"
    },
    {
     "id": "SGD:S000004230",
     "label": "VPS34 Scer"
    },
    {
     "id": "SGD:S000001264",
     "label": "INP51 Scer"
    },
    {
     "id": "SGD:S000004296",
     "label": "STT4 Scer"
    },
    {
     "id": "SGD:S000005635",
     "label": "INP53 Scer"
    },
    {
     "id": "SGD:S000005426",
     "label": "INP54 Scer"
    },
    {
     "id": "SGD:S000005211",
     "label": "PIK1 Scer"
    }
   ],
   "reactions": [
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    "gomodel:RXN-10961",
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    "gomodel:YeastPathways_PWY3O-242/6a4c244800005945",
    "gomodel:YeastPathways_PWY3O-242/6a4c244800005962",
    "gomodel:YeastPathways_PWY3O-242/6a4c244800005984",
    "gomodel:YeastPathways_PWY3O-242/6a4c244800006005",
    "gomodel:YeastPathways_PWY3O-242/6a4c244800006024",
    "gomodel:YeastPathways_PWY3O-242/6a4c244800006043",
    "gomodel:YeastPathways_PWY3O-242/6a4c244800006061",
    "gomodel:YeastPathways_PWY3O-242/6a4c244800006079",
    "gomodel:YeastPathways_PWY3O-242/6a4c244800006096",
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    "gomodel:YeastPathways_PWY3O-242/6a4c244800006132",
    "gomodel:YeastPathways_PWY3O-242/6a4c244800006151"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY3O-259",
   "label": "phospholipid biosynthesis II (Kennedy pathway)",
   "pathway_type": "lipid-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY3O-259.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY3O-259.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000002554",
     "label": "EKI1 Scer"
    },
    {
     "id": "SGD:S000001165",
     "label": "EPT1 Scer"
    },
    {
     "id": "SGD:S000003239",
     "label": "ECT1 Scer"
    }
   ],
   "reactions": [
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   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY3O-4",
   "label": "carnitine shuttle",
   "pathway_type": "carnitine-shuttle",
   "page": "records/gomodel_YeastPathways_PWY3O-4.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY3O-4.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000004506",
     "label": "CAT2 Scer"
    },
    {
     "id": "SGD:S000000080",
     "label": "YAT1 Scer"
    },
    {
     "id": "SGD:S000000826",
     "label": "YAT2 Scer"
    }
   ],
   "reactions": [
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    "gomodel:RXN3O-37",
    "gomodel:YeastPathways_PWY3O-4/6a46ef0600000733",
    "gomodel:YeastPathways_PWY3O-4/6a46ef0600000742"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY3O-402",
   "label": "inositol phosphate biosynthesis",
   "pathway_type": "inositol-phosphate-biosynthesis",
   "page": "records/gomodel_YeastPathways_PWY3O-402.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY3O-402.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000002424",
     "label": "KCS1 Scer"
    },
    {
     "id": "SGD:S000002723",
     "label": "IPK1 Scer"
    },
    {
     "id": "SGD:S000005689",
     "label": "DDP1 Scer"
    },
    {
     "id": "SGD:S000002580",
     "label": "ARG82 Scer"
    },
    {
     "id": "SGD:S000006189",
     "label": "PLC1 Scer"
    },
    {
     "id": "SGD:S000004402",
     "label": "VIP1 Scer"
    }
   ],
   "reactions": [
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    "RHEA:79724"
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    {
     "id": "SGD:S000001179",
     "label": "ARO9 Scer"
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    {
     "id": "SGD:S000005446",
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     "id": "SGD:S000003225",
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   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY3O-4112.html",
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     "label": "ARO10 Scer"
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     "id": "SGD:S000003909",
     "label": "BAT2 Scer"
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    {
     "id": "SGD:S000002327",
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    {
     "id": "SGD:S000001251",
     "label": "BAT1 Scer"
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     "id": "SGD:S000003225",
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    {
     "id": "SGD:S000000349",
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     "id": "SGD:S000000370",
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    {
     "id": "SGD:S000006264",
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     "id": "SGD:S000005804",
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     "id": "SGD:S000006322",
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    {
     "id": "SGD:S000001251",
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    {
     "id": "SGD:S000000764",
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     "id": "SGD:S000003909",
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    {
     "id": "SGD:S000001179",
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    {
     "id": "SGD:S000002210",
     "label": "SLC1 Scer"
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    {
     "id": "SGD:S000001775",
     "label": "GPT2 Scer"
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    {
     "id": "SGD:S000001386",
     "label": "AYR1 Scer"
    }
   ],
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   ],
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    },
    {
     "id": "SGD:S000005420",
     "label": "GPD2 Scer"
    },
    {
     "id": "SGD:S000001775",
     "label": "GPT2 Scer"
    },
    {
     "id": "SGD:S000002180",
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    },
    {
     "id": "SGD:S000002210",
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   ],
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   ]
  },
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   "pathway_type": "folate-metabolism",
   "page": "records/gomodel_YeastPathways_PWY3O-697.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY3O-697.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000000288",
     "label": "MIS1 Scer"
    },
    {
     "id": "SGD:S000003436",
     "label": "ADE3 Scer"
    },
    {
     "id": "SGD:S000001788",
     "label": "MTD1 Scer"
    },
    {
     "id": "SGD:S000218158",
     "label": "CPX-1268 Scer"
    },
    {
     "id": "SGD:S000005944",
     "label": "MET12 Scer"
    },
    {
     "id": "SGD:S000005762",
     "label": "DFR1 Scer"
    },
    {
     "id": "SGD:S000003093",
     "label": "MET13 Scer"
    },
    {
     "id": "SGD:S000004048",
     "label": "SHM2 Scer"
    },
    {
     "id": "SGD:S000000467",
     "label": "SHM1 Scer"
    },
    {
     "id": "SGD:S000005600",
     "label": "CDC21 Scer"
    },
    {
     "id": "UniProtKB:P39726",
     "label": "Glycine cleavage system H protein, mitochondrial"
    },
    {
     "id": "SGD:S000001876",
     "label": "LPD1 Scer"
    },
    {
     "id": "SGD:S000004801",
     "label": "GCV2 Scer"
    },
    {
     "id": "SGD:S000002426",
     "label": "GCV1 Scer"
    }
   ],
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    "gomodel:1.5.1.20-RXN",
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    "gomodel:FORMATETHFLIG-RXN",
    "gomodel:GCVMULTI-RXN",
    "gomodel:GLYOHMETRANS-RXN",
    "gomodel:METHENYLTHFCYCLOHYDRO-RXN",
    "gomodel:METHYLENETHFDEHYDROG-NADP-RXN",
    "gomodel:THYMIDYLATESYN-RXN",
    "gomodel:YeastPathways_PWY3O-697/6a4c244800005448",
    "gomodel:YeastPathways_PWY3O-697/6a4c244800005468",
    "gomodel:YeastPathways_PWY3O-697/6a4c244800005484",
    "gomodel:YeastPathways_PWY3O-697/6a4c244800005502",
    "gomodel:YeastPathways_PWY3O-697/6a4c244800005519"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWY3O-8",
   "label": "xylose metabolism",
   "pathway_type": "carbohydrate-degradation",
   "page": "records/gomodel_YeastPathways_PWY3O-8.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWY3O-8.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000004060",
     "label": "XYL2 Scer"
    },
    {
     "id": "SGD:S000001146",
     "label": "GRE3 Scer"
    }
   ],
   "reactions": [
    "gomodel:D-XYLULOSE-REDUCTASE-RXN",
    "gomodel:RXN-8773"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PWYQT-4432",
   "label": "glutathione degradation",
   "pathway_type": "glutathione-degradation",
   "page": "records/gomodel_YeastPathways_PWYQT-4432.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PWYQT-4432.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000001940",
     "label": "DUG1 Scer"
    },
    {
     "id": "SGD:S000004290",
     "label": "ECM38 Scer"
    }
   ],
   "reactions": [
    "gomodel:RXN-6601",
    "gomodel:RXN-6622"
   ]
  },
  {
   "id": "gomodel:YeastPathways_PYRUVDEHYD-PWY",
   "label": "pyruvate decarboxylation to acetyl CoA",
   "pathway_type": "central-carbon-metabolism",
   "page": "records/gomodel_YeastPathways_PYRUVDEHYD-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_PYRUVDEHYD-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000005015",
     "label": "LAT1 Scer"
    },
    {
     "id": "SGD:S000001876",
     "label": "LPD1 Scer"
    },
    {
     "id": "SGD:S000000425",
     "label": "PDB1 Scer"
    },
    {
     "id": "SGD:S000000980",
     "label": "PDA1 Scer"
    }
   ],
   "reactions": [
    "gomodel:RXN0-1132",
    "gomodel:RXN0-1133",
    "gomodel:RXN0-1134",
    "gomodel:YeastPathways_PYRUVDEHYD-PWY/6a4c244800000320"
   ]
  },
  {
   "id": "gomodel:YeastPathways_SO4ASSIM-PWY",
   "label": "assimilatory sulfate reduction I",
   "pathway_type": "metabolic",
   "page": "records/gomodel_YeastPathways_SO4ASSIM-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_SO4ASSIM-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000001484",
     "label": "MET14 Scer"
    },
    {
     "id": "SGD:S000003771",
     "label": "MET3 Scer"
    },
    {
     "id": "SGD:S000217821",
     "label": "CPX-3163 Scer"
    },
    {
     "id": "SGD:S000001926",
     "label": "MET10 Scer"
    },
    {
     "id": "SGD:S000003898",
     "label": "MET5 Scer"
    },
    {
     "id": "SGD:S000006371",
     "label": "MET16 Scer"
    }
   ],
   "reactions": [
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    "gomodel:ADENYLYLSULFKIN-RXN",
    "gomodel:SULFATE-ADENYLYLTRANS-RXN",
    "gomodel:SULFITE-REDUCT-RXN"
   ]
  },
  {
   "id": "gomodel:YeastPathways_SPHINGOLIPID-SYN-PWY-1",
   "label": "sphingolipid biosynthesis (yeast)",
   "pathway_type": "sphingolipid-biosynthesis",
   "page": "records/gomodel_YeastPathways_SPHINGOLIPID-SYN-PWY-1.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_SPHINGOLIPID-SYN-PWY-1.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000002705",
     "label": "SUR2 Scer"
    },
    {
     "id": "SGD:S000001761",
     "label": "YSR3 Scer"
    },
    {
     "id": "SGD:S000001487",
     "label": "AUR1 Scer"
    },
    {
     "id": "SGD:S000002702",
     "label": "DPL1 Scer"
    },
    {
     "id": "SGD:S000002479",
     "label": "IPT1 Scer"
    },
    {
     "id": "SGD:S000000469",
     "label": "TSC10 Scer"
    },
    {
     "id": "SGD:S000003670",
     "label": "LCB3 Scer"
    },
    {
     "id": "SGD:S000002469",
     "label": "LCB2 Scer"
    },
    {
     "id": "SGD:S000004911",
     "label": "LCB1 Scer"
    },
    {
     "id": "SGD:S000000387",
     "label": "YPC1 Scer"
    },
    {
     "id": "SGD:S000218096",
     "label": "CPX-1706 Scer"
    },
    {
     "id": "SGD:S000004250",
     "label": "LCB5 Scer"
    },
    {
     "id": "SGD:S000004885",
     "label": "SCS7 Scer"
    },
    {
     "id": "SGD:S000005697",
     "label": "LCB4 Scer"
    },
    {
     "id": "SGD:S000006008",
     "label": "YDC1 Scer"
    },
    {
     "id": "SGD:S000218211",
     "label": "CPX-1739 Scer"
    },
    {
     "id": "UniProtKB:P38703",
     "label": "Ceramide synthase LAG1"
    },
    {
     "id": "UniProtKB:P28496",
     "label": "Ceramide synthase LAC1"
    },
    {
     "id": "UniProtKB:Q03579",
     "label": "Ceramide synthase subunit LIP1"
    },
    {
     "id": "UniProtKB:P33300",
     "label": "Mannosyl phosphorylinositol ceramide synthase SUR1"
    },
    {
     "id": "UniProtKB:P35206",
     "label": "Mannosyl phosphorylinositol ceramide synthase regulatory protein CSG2"
    }
   ],
   "reactions": [
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    "gomodel:CERAMIDASE-YEAST-RXN",
    "gomodel:DHS-PHOSPHATASE-RXN",
    "gomodel:RXN3O-1380",
    "gomodel:RXN3O-328",
    "gomodel:RXN3O-4042",
    "gomodel:RXN3O-458",
    "gomodel:RXN3O-504",
    "gomodel:RXN3O-581",
    "gomodel:RXN3O-663",
    "gomodel:RXN3O-680",
    "gomodel:SERINE-C-PALMITOYLTRANSFERASE-RXN",
    "gomodel:SPHINGANINE-1-PHOSPHATE-ALDOLASE-RXN",
    "gomodel:SPHINGANINE-KINASE-RXN",
    "gomodel:YeastPathways_SPHINGOLIPID-SYN-PWY-1/6a4c244800006208",
    "gomodel:YeastPathways_SPHINGOLIPID-SYN-PWY-1/6a4c244800006227",
    "gomodel:YeastPathways_SPHINGOLIPID-SYN-PWY-1/6a4c244800006241",
    "gomodel:YeastPathways_SPHINGOLIPID-SYN-PWY-1/6a4c244800006260",
    "gomodel:YeastPathways_SPHINGOLIPID-SYN-PWY-1/6a4c244800006275",
    "gomodel:YeastPathways_SPHINGOLIPID-SYN-PWY-1/6a4c244800006292"
   ]
  },
  {
   "id": "gomodel:YeastPathways_THREOCAT2-PWY",
   "label": "threonine degradation",
   "pathway_type": "amino-acid-degradation",
   "page": "records/gomodel_YeastPathways_THREOCAT2-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_THREOCAT2-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000000569",
     "label": "CHA1 Scer"
    },
    {
     "id": "UniProtKB:P37303",
     "label": "Low specificity L-threonine aldolase"
    }
   ],
   "reactions": [
    "gomodel:THREDEHYD2-RXN",
    "GO:0004793"
   ]
  },
  {
   "id": "gomodel:YeastPathways_UDPNAGSYN-YEAST-PWY",
   "label": "UDP-N-acetylglucosamine biosynthesis",
   "pathway_type": "amino-sugar-biosynthesis",
   "page": "records/gomodel_YeastPathways_UDPNAGSYN-YEAST-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_UDPNAGSYN-YEAST-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000002261",
     "label": "QRI1 Scer"
    },
    {
     "id": "SGD:S000001877",
     "label": "GNA1 Scer"
    },
    {
     "id": "SGD:S000001587",
     "label": "GFA1 Scer"
    },
    {
     "id": "SGD:S000000784",
     "label": "PCM1 Scer"
    }
   ],
   "reactions": [
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    "gomodel:NAG1P-URIDYLTRANS-RXN",
    "gomodel:PHOSACETYLGLUCOSAMINEMUT-RXN"
   ]
  },
  {
   "id": "gomodel:YeastPathways_YEAST-4AMINOBUTMETAB-PWY",
   "label": "4-aminobutyrate degradation",
   "pathway_type": "4-aminobutyrate-degradation",
   "page": "records/gomodel_YeastPathways_YEAST-4AMINOBUTMETAB-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_YEAST-4AMINOBUTMETAB-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
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    {
     "id": "SGD:S000000210",
     "label": "UGA2 Scer"
    },
    {
     "id": "SGD:S000003251",
     "label": "UGA1 Scer"
    }
   ],
   "reactions": [
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    "gomodel:RXN0-5293"
   ]
  },
  {
   "id": "gomodel:YeastPathways_YEAST-FAO-PWY",
   "label": "fatty acid oxidation pathway",
   "pathway_type": "fatty-acid-oxidation",
   "page": "records/gomodel_YeastPathways_YEAST-FAO-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_YEAST-FAO-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000004860",
     "label": "FAA4 Scer"
    },
    {
     "id": "SGD:S000001717",
     "label": "FOX2 Scer"
    },
    {
     "id": "SGD:S000004274",
     "label": "ECI1 Scer"
    },
    {
     "id": "SGD:S000005844",
     "label": "FAA1 Scer"
    },
    {
     "id": "SGD:S000001422",
     "label": "POT1 Scer"
    },
    {
     "id": "SGD:S000000245",
     "label": "FAT1 Scer"
    },
    {
     "id": "SGD:S000003173",
     "label": "POX1 Scer"
    },
    {
     "id": "SGD:S000005706",
     "label": "DCI1 Scer"
    },
    {
     "id": "SGD:S000000817",
     "label": "FAA2 Scer"
    },
    {
     "id": "SGD:S000001271",
     "label": "FAA3 Scer"
    }
   ],
   "reactions": [
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    "RHEA:45241",
    "RHEA:26528",
    "gomodel:KETOACYLCOATHIOL-RXN",
    "RHEA:32712",
    "gomodel:RXN-11026",
    "gomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006775",
    "gomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006787",
    "gomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006810",
    "gomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006831",
    "gomodel:YeastPathways_YEAST-FAO-PWY/6a4c244800006852"
   ]
  },
  {
   "id": "gomodel:YeastPathways_YEAST-GALACT-METAB-PWY",
   "label": "galactose degradation",
   "pathway_type": "galactose-degradation",
   "page": "records/gomodel_YeastPathways_YEAST-GALACT-METAB-PWY.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_YEAST-GALACT-METAB-PWY.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000004711",
     "label": "PGM2 Scer"
    },
    {
     "id": "SGD:S000000223",
     "label": "GAL10 Scer"
    },
    {
     "id": "SGD:S000000224",
     "label": "GAL1 Scer"
    },
    {
     "id": "SGD:S000000222",
     "label": "GAL7 Scer"
    },
    {
     "id": "SGD:S000001610",
     "label": "PGM1 Scer"
    }
   ],
   "reactions": [
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    "gomodel:GALACTOKIN-RXN",
    "gomodel:GALACTURIDYLYLTRANS-RXN",
    "gomodel:PHOSPHOGLUCMUT-RXN",
    "gomodel:UDPGLUCEPIM-RXN",
    "gomodel:YeastPathways_YEAST-GALACT-METAB-PWY/6a4c244800000632"
   ]
  },
  {
   "id": "gomodel:YeastPathways_YEAST-RNT-SALV",
   "label": "salvage pathways of pyrimidine ribonucleotides",
   "pathway_type": "nucleotide-salvage",
   "page": "records/gomodel_YeastPathways_YEAST-RNT-SALV.html",
   "url": "https://culturebotai.github.io/PathwayMech/pages/records/gomodel_YeastPathways_YEAST-RNT-SALV.html",
   "taxa": [
    {
     "id": "NCBITaxon:559292",
     "label": "Saccharomyces cerevisiae S288C"
    }
   ],
   "proteins": [
    {
     "id": "SGD:S000002808",
     "label": "URH1 Scer"
    },
    {
     "id": "SGD:S000005295",
     "label": "URK1 Scer"
    },
    {
     "id": "SGD:S000001550",
     "label": "YNK1 Scer"
    },
    {
     "id": "SGD:S000001507",
     "label": "URA6 Scer"
    },
    {
     "id": "SGD:S000006266",
     "label": "FCY1 Scer"
    },
    {
     "id": "SGD:S000004235",
     "label": "CDD1 Scer"
    },
    {
     "id": "SGD:S000001170",
     "label": "FUR1 Scer"
    }
   ],
   "reactions": [
    "gomodel:CDPKIN-RXN",
    "gomodel:CYTDEAM-RXN",
    "gomodel:CYTIDEAM2-RXN",
    "gomodel:CYTIDINEKIN-RXN",
    "gomodel:RXN-11832",
    "gomodel:RXN0-361",
    "gomodel:URACIL-PRIBOSYLTRANS-RXN",
    "gomodel:URIDINE-NUCLEOSIDASE-RXN",
    "gomodel:URIDINEKIN-RXN"
   ]
  }
 ]
}