albomycin ε

CHEBI:83217 ·resolve ·ANTIBACTERIAL ·EXACT SEEDED

An iron(III) hydroxamate in which desferrialbomycin ε(3−) is complexed to iron(III). — ChEBI

Machine-generated and unreviewed. Identity, structure and cross-references come straight from ChEBI's and CARD's own data; no curator has signed off on this record yet.

Classification

Strictly broader compounds or drug classes this molecule belongs to.

Label unavailable CHEBI:28163

Chemical structure

Computed structure properties
Molecular formula	C36H56FeN11O17S
Charge	0
Average mass	1002.816 Da
Monoisotopic mass	1002.29257 Da
Source	ChEBI
InChIKey	VQCJCCMAGPCDIK-DFBZBFILSA-N

SMILES

[H][C@]1([C@@H](O)[C@@H](NC(=O)[C@H](CO)NC(=O)[C@@H]2CCCN(C(C)=O)[O][Fe]3[O]N(C(C)=O)CCC[C@H](NC(=O)[C@@H](N)CCCN(C(C)=O)[O]3)C(=O)N2)C(=O)O)S[C@@]([H])(n2ccc(=N)n(C)c2=O)[C@H](O)[C@H]1O

InChI

InChI=1S/C36H56N11O17S.Fe/c1-17(49)45(62)12-5-8-20(37)30(55)39-21(9-6-13-46(63)18(2)50)31(56)40-22(10-7-14-47(64)19(3)51)32(57)41-23(16-48)33(58)42-25(35(59)60)26(52)29-27(53)28(54)34(65-29)44-15-11-24(38)43(4)36(44)61;/h11,15,20-23,25-29,34,38,48,52-54H,5-10,12-14,16,37H2,1-4H3,(H,39,55)(H,40,56)(H,41,57)(H,42,58)(H,59,60);/q-3;+3/t20-,21-,22-,23-,25+,26-,27+,28+,29+,34+;/m0./s1

Also called

iron(3+) N5-acetyl-N5-oxido-L-ornithyl-N5-acetyl-N5-oxido-L-ornithyl-N5-acetyl-N5-oxido-L-ornithyl-L-seryl-(3S)-3-[(2R,3R,4R,5R)-3,4-dihydroxy-5-(4-imino-3-methyl-2-oxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrothiophen-2-yl]-D-serine (EXACT_SYNONYM)— chebi
[N5-acetyl-N5-(hydroxy-κO)-L-ornithyl-N5-acetyl-N5-(hydroxy-κO)-L-ornithyl-N5-acetyl-N5-(hydroxy-κO)-L-ornithyl-L-seryl-(3S)-3-[(2R,3R,4R,5R)-3,4-dihydroxy-5-(4-imino-3-methyl-2-oxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrothiophen-2-yl]-D-serinato(3−)]iron (EXACT_SYNONYM)— chebi
albomycin (ε) (EXACT_SYNONYM)— chebi

Activity roles

Every antimicrobial role a source asserts for this compound — the unreduced evidence behind its antimicrobial_class.

antimicrobial agent CHEBI:33281
antibacterial agent CHEBI:33282

Source concepts

Every upstream concept that resolved to this record. The merge is the product: this is what shows ChEBI and CARD are describing the same structure.

Upstream concepts merged into this record
Source	Native ID	Label	Minted CURIE	Version
CHEBI	`CHEBI:83217`	albomycin ε	`antibioticmech:chebi-2a0900c7f4`	2026-08-30

Curation history

SEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources
Seeded from data/raw/ inventories (CHEBI)
RESEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources
Re-seeded from updated data/raw/ inventories
RESEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources
Re-seeded from updated data/raw/ inventories

Provenance

Seeded by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record (YAML).

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