Record browser
Faceted browser of microbial communities — filter by category, ecological state, metals, and rare-earth elements.
Embedding browser
Interactive 2D PaCMAP & PCA projections of text embeddings (BAAI/bge-small-en-v1.5) and KG-Microbe taxonomic DeepWalk embeddings.
Protein sequence map (pLM)
Interactive 1,280-D ESM-2 protein language model embedding space for CommunityMech functional genes and guild markers.
LinkML Schema
Browse classes, slots, ontology prefixes (NCBITaxon, ENVO, ChEBI, GO, METPO), and permissible enums in the CommunityMech schema.
Downloads & bulk data
Download the full 473-community dataset as structured JSON or tabular TSV, or inspect individual YAML records in kb/communities/.