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Protein Language Model (ESM-2) Sequence Embedding Map

2D PaCMAP & PCA projection of 1,280-D ESM-2 protein sequence embeddings for CommunityMech functional genes and guild markers

pLM: facebook/esm2_t33_650M_UR50D Dimension: 1280D Proteins: 27

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Showing 27 of 27

Projection layout

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Drag to pan · Scroll to zoom · Click any protein node to inspect ESM-2 neighbors & communities

Click any protein node in the ESM-2 embedding map to inspect its functional role, UniProt accession, nearest pLM sequence neighbors, and participating CommunityMech communities.

CommunityMech Knowledge Base (27 proteins) • Schema: https://w3id.org/communitymech • Source: kb/communities/ • License: BSD-3-Clause