clerocidin

antibioticmech:aro-df383601e2 ·ANTIBACTERIAL ·MINTED SEEDED

Clerocidin is a terpenoid antibiotic that inhibits bacterial DNA gyrase. It is a natural diterpenoid which has been shown to selectively react with single-stranded bases without targeting the double helix. — PMID:12930966

Machine-generated and unreviewed. Identity, structure and cross-references come straight from ChEBI's and CARD's own data; no curator has signed off on this record yet.

Classification

terpene with antibiotic activityARO:3005172

Strictly broader compounds or drug classes this molecule belongs to.

terpene with antibiotic activity ARO:3005172

Chemical structure

Computed structure properties
Molecular formula	C40H56O10
Charge	0
Average mass	696.9 Da
Monoisotopic mass	696.38734798 Da
Source	PubChem · retrieved 2026-08-29
InChIKey	LKJYEAJRWPUOGW-UHFFFAOYSA-N

SMILES

CC1CCC2(C(C1(C)CC3C4(CO4)C5(C(O3)OC6(C(O5)OC(C67CO7)CC8(C(CCC9(C8CCC=C9C=O)C)C)C)O)O)CCC=C2C=O)C

InChI

InChI=1S/C40H56O10/c1-23-13-15-33(3)25(19-41)9-7-11-27(33)35(23,5)17-29-37(21-45-37)39(43)31(47-29)49-40(44)32(50-39)48-30(38(40)22-46-38)18-36(6)24(2)14-16-34(4)26(20-42)10-8-12-28(34)36/h9-10,19-20,23-24,27-32,43-44H,7-8,11-18,21-22H2,1-6H3

Cross-references

Identifiers for this same structure in other resources. An accession that lands on two different structures in this corpus is withheld from both rather than shown here, since it names at most one of them.

Source concepts

Every upstream concept that resolved to this record. The merge is the product: this is what shows ChEBI and CARD are describing the same structure.

Upstream concepts merged into this record
Source	Native ID	Label	Minted CURIE	Version
ARO	`ARO:3007660`	clerocidin	`antibioticmech:aro-df383601e2`	2026-08-30

Curation history

SEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources
Seeded from data/raw/ inventories (ARO)
RESEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources
Re-seeded from updated data/raw/ inventories
RESEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources
Re-seeded from updated data/raw/ inventories

Provenance

Seeded by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record (YAML).

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