AntibioticMech

nocardamine

CHEBI:50437 ·resolve ·ANTIBACTERIAL ·EXACT SEEDED

Nocardamine is a cyclic trihydroxamate. It belongs to a group of microbial siderophores which form complexes with iron and aluminum ions. Nocardamine was described first as an antibiotic active against mycobacteria and proteus. It is produced by Nocardia species, several Streptomyces species, Chromobacterium and Pseudomonas. — PMID:31395970

Classification

peptide antibioticARO:3000053

Strictly broader compounds or drug classes this molecule belongs to.

• ARO:3000053 ARO:3000053

Chemical structure

Computed structure properties

Molecular formula	C27H48N6O9
Charge	0
Average mass	600.714 Da
Monoisotopic mass	600.34828 Da
Source	ChEBI
InChIKey	NHKCCADZVLTPPO-UHFFFAOYSA-N

SMILES

O=C1CCC(=O)N(O)CCCCCNC(=O)CCC(=O)N(O)CCCCCNC(=O)CCC(=O)N(O)CCCCCN1

InChI

InChI=1S/C27H48N6O9/c34-22-10-14-26(38)32(41)20-8-3-6-18-30-24(36)12-15-27(39)33(42)21-9-2-5-17-29-23(35)11-13-25(37)31(40)19-7-1-4-16-28-22/h40-42H,1-21H2,(H,28,34)(H,29,35)(H,30,36)

Also called

• Deferrioxamine E (EXACT_SYNONYM)— aro
• nocardamin (EXACT_SYNONYM)— aro

Cross-references

Equivalent identifiers for this same structure in other resources.

• ARO:3007785
• chembl:CHEMBL505734
• pubchem.compound:161532

Source concepts

Every upstream concept that resolved to this record. The merge is the product: this is what shows ChEBI and CARD are describing the same structure.

Upstream concepts merged into this record

Source	Native ID	Label	Minted CURIE	Version
ARO	ARO:3007785	nocardamine	antibioticmech:aro-017963dba2	2026-08-30

Curation history

1. SEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources

   Seeded from data/raw/ inventories (ARO)

2. RESEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources

   Re-seeded from updated data/raw/ inventories

3. RESEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources

   Re-seeded from updated data/raw/ inventories

Provenance

Seeded by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record.