phenelfamycin D

antibioticmech:aro-b4caf30bd7 ·ANTIBACTERIAL ·MINTED SEEDED

Phenelfamycin D was isolated from two environmental isolates called AB999F-80 and AB1047T-33. They were both identified as Streptomyces violaceoniger strains. Both these strains were found to produce phenelfamycins A-F and unphenelfamycin. Phenelfamycin D has a disaccaride moeity and is isomeric with phenelfamycin C. All phenelfamycins were selected due to their activity against anaerobic bacteria, especially Clostridioides difficile. — PMID:2921230

Machine-generated and unreviewed. Identity, structure and cross-references come straight from ChEBI's and CARD's own data; no curator has signed off on this record yet.

Classification

elfamycin antibioticARO:3001219

Strictly broader compounds or drug classes this molecule belongs to.

ARO:3001219 ARO:3001219

Chemical structure

Computed structure properties
Molecular formula	C58H83NO18
Charge	0
Average mass	1082.3 Da
Monoisotopic mass	1081.5610148 Da
Source	PubChem · retrieved 2026-08-29
InChIKey	FKLIFBBUPUAJOL-VZLGSHJVSA-N

SMILES

C/C=C\C=C\[C@H]1C([C@H]([C@H]([C@](O1)(C(CO[C@@H]2C[C@H]([C@H]([C@H](O2)C)O[C@@H]3C[C@H]([C@H]([C@H](O3)C)O)OC)OC)C(=O)NC/C=C/C=C(\C)/C(C(C)C4CC(C(O4)/C=C/C=C/C=C/C(=O)O)O)OC)O)O)OC(=O)CC5=CC=CC=C5)(C)C

InChI

InChI=1S/C58H83NO18/c1-11-12-16-27-46-57(6,7)55(75-48(63)30-39-24-17-15-18-25-39)54(65)58(67,77-46)40(34-71-49-33-45(69-9)53(38(5)73-49)76-50-32-44(68-8)51(64)37(4)72-50)56(66)59-29-22-21-23-35(2)52(70-10)36(3)43-31-41(60)42(74-43)26-19-13-14-20-28-47(61)62/h11-28,36-38,40-46,49-55,60,64-65,67H,29-34H2,1-10H3,(H,59,66)(H,61,62)/b12-11-,14-13+,22-21+,26-19+,27-16+,28-20+,35-23+/t36?,37-,38-,40?,41?,42?,43?,44-,45-,46+,49+,50-,51+,52?,53+,54-,55+,58-/m1/s1

Cross-references

Equivalent identifiers for this same structure in other resources.

Source concepts

Every upstream concept that resolved to this record. The merge is the product: this is what shows ChEBI and CARD are describing the same structure.

Upstream concepts merged into this record
Source	Native ID	Label	Minted CURIE	Version
ARO	`ARO:3001252`	phenelfamycin D	`antibioticmech:aro-b4caf30bd7`	2026-08-30

Curation history

SEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources
Seeded from data/raw/ inventories (ARO)
RESEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources
Re-seeded from updated data/raw/ inventories
RESEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources
Re-seeded from updated data/raw/ inventories

Provenance

Seeded by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record.