rhodomycin D

CHEBI:32096 ·resolve ·ANTIMICROBIAL_UNSPECIFIED ·EXACT SEEDED

An anthracycline that is aklavinone having a 3-amino-2,3,6-trideoxy-α-L-lyxo-hexopyranosyl residue attached at position 4 via a glycosidic linkage. — ChEBI

Machine-generated and unreviewed. Identity, structure and cross-references come straight from ChEBI's and CARD's own data; no curator has signed off on this record yet.

Classification

Strictly broader compounds or drug classes this molecule belongs to.

CHEBI:25248 CHEBI:25248
CHEBI:25830 CHEBI:25830
CHEBI:35315 CHEBI:35315
CHEBI:47779 CHEBI:47779
CHEBI:49322 CHEBI:49322
CHEBI:51286 CHEBI:51286
CHEBI:63367 CHEBI:63367

Chemical structure

Computed structure properties
Molecular formula	C28H31NO11
Charge	0
Average mass	557.552 Da
Monoisotopic mass	557.18971 Da
Source	ChEBI
InChIKey	CADJZGPRUYOSGU-QWWLYEKJSA-N

SMILES

CC[C@@]1(O)C[C@H](O[C@H]2C[C@H](N)[C@H](O)[C@H](C)O2)c2c(O)c3c(c(O)c2[C@H]1C(=O)OC)C(=O)c1cccc(O)c1C3=O

InChI

InChI=1S/C28H31NO11/c1-4-28(37)9-14(40-15-8-12(29)22(31)10(2)39-15)17-18(21(28)27(36)38-3)26(35)19-20(25(17)34)24(33)16-11(23(19)32)6-5-7-13(16)30/h5-7,10,12,14-15,21-22,30-31,34-35,37H,4,8-9,29H2,1-3H3/t10-,12-,14-,15-,21-,22+,28+/m0/s1

Also called

methyl (1R,2R,4S)-4-[(3-amino-2,3,6-trideoxy-α-L-lyxo-hexopyranosyl)oxy]-2-ethyl-2,5,7,12-tetrahydroxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracene-1-carboxylate (EXACT_SYNONYM)— chebi
1-Hydroxy-10-methoxycarbonyl-13-deoxocarminomycin (EXACT_SYNONYM)— chebi
7-O-(3-Amino-2,3,6-trideoxy-alpha-hexopyranosyl)-epsilon-isorhodomycinone (EXACT_SYNONYM)— chebi
Rhodomycin D (EXACT_SYNONYM)— chebi
rhodomycinone D (EXACT_SYNONYM)— chebi

Cross-references

Equivalent identifiers for this same structure in other resources.

cas:117016-15-6
kegg.compound:C12426
metacyc.compound:CPD-15730
patent:KR20090092481
reaxys:4222916

Activity roles

Every antimicrobial role a source asserts for this compound — the unreduced evidence behind its antimicrobial_class.

CHEBI:33281 CHEBI:33281

Source concepts

Every upstream concept that resolved to this record. The merge is the product: this is what shows ChEBI and CARD are describing the same structure.

Upstream concepts merged into this record
Source	Native ID	Label	Minted CURIE	Version
CHEBI	`CHEBI:32096`	rhodomycin D	`antibioticmech:chebi-7ca36390fd`	2026-08-30

Curation history

SEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources
Seeded from data/raw/ inventories (CHEBI)
RESEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources
Re-seeded from updated data/raw/ inventories
RESEEDED_FROM_SOURCES 2026-08-30 · seed_from_sources
Re-seeded from updated data/raw/ inventories

Provenance

Seeded by scripts/seed_from_sources.py from the committed inventories in data/raw/. View the record.