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Arabidopsis Coumarin Root SynCom

Community ID CommunityMech:000094
Ecological State ENGINEERED
Environment rhizosphere
ENVO:00005801

A reduced Arabidopsis root-isolate SynCom used to detect rhizosphere community shifts caused by phytoalexin, flavonoid, and coumarin exudates.

Taxonomy

Taxon Ontology ID Functional Roles Abundance
Arabidopsis root-isolated bacteria NCBITaxon:2
CROSS_FEEDER
N/A
  • PMID:31152139 - SUPPORT (IN_VITRO)
    "We employed a reduced synthetic community (SynCom) of Arabidopsis thaliana root-isolated bacteria to detect community shifts that occur in the absence of the secreted small-molecule phytoalexins, flavonoids, and coumarins."

Ecological Interactions

Ecological interaction network for Arabidopsis Coumarin Root SynCom Bipartite graph where circle nodes represent taxa and colored rectangles represent ecological interactions (cross-feeding, mutualism, syntrophy, competition, commensalism).
Taxon
Cross-feeding
Mutualism
Syntrophy
Competition
Commensalism
Niche partitioning
Colonization facilitation
Strain competition
Predation

Coumarin-Dependent Recruitment

COLONIZATION_FACILITATION

Evidence

  • PMID:31152139 - SUPPORT (IN_VITRO)
    "We employed a reduced synthetic community (SynCom) of Arabidopsis thaliana root-isolated bacteria to detect community shifts that occur in the absence of the secreted small-molecule phytoalexins, flavonoids, and coumarins."

Environmental Factors

Factor Value Unit
defined synthetic community design Reduced synthetic community of Arabidopsis thaliana root-isolated bacteria. N/A
  • PMID:31152139 - SUPPORT (IN_VITRO)
    "We employed a reduced synthetic community (SynCom) of Arabidopsis thaliana root-isolated bacteria to detect community shifts that occur in the absence of the secreted small-molecule phytoalexins, flavonoids, and coumarins."