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LBNL Human Gut Interaction SynCom

Community ID CommunityMech:000122
Ecological State ENGINEERED
Environment human gut microbiome
UBERON:0001007

A diverse synthetic human gut microbiome community used with model-guided time-series experiments to infer pairwise ecological interactions and metabolic drivers of coexistence.

Taxonomy

Taxon Ontology ID Functional Roles Abundance
human gut bacterial SynCom members NCBITaxon:2
CROSS_FEEDER
N/A
  • PMID:29930200 - SUPPORT (IN_VITRO)
    "This method was employed to decipher microbial interactions in a diverse human gut microbiome synthetic community."

Ecological Interactions

Ecological interaction network for LBNL Human Gut Interaction SynCom Bipartite graph where circle nodes represent taxa and colored rectangles represent ecological interactions (cross-feeding, mutualism, syntrophy, competition, commensalism).
Taxon
Cross-feeding
Mutualism
Syntrophy
Competition
Commensalism
Niche partitioning
Colonization facilitation
Strain competition
Predation

Pairwise Gut Community Interactions

CROSS_FEEDING

Evidence

  • PMID:29930200 - SUPPORT (IN_VITRO)
    "This method was employed to decipher microbial interactions in a diverse human gut microbiome synthetic community."

Environmental Factors

Factor Value Unit
model-guided synthetic community design Lower-order assemblages were used to predict higher-dimensional human gut SynCom dynamics. N/A
  • PMID:29930200 - SUPPORT (IN_VITRO)
    "This method was employed to decipher microbial interactions in a diverse human gut microbiome synthetic community."