sulfophobococcus_medium

CultureMech:002612 archaea COMPLEX LIQUID
Original name: SULFOPHOBOCOCCUS MEDIUM

Overview

External ontology
mediadive.medium:J252 (source link unavailable) — SULFOPHOBOCOCCUS MEDIUM
Applications
  • Microbial cultivation
pH
7.6
Notes
Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=252 Commercial Product: LB Medium (Luria-Bertani, Miller formulation) Supplier: Multiple suppliers (Difco, Sigma, etc.) Catalog: Multiple (L3522 Sigma, 244520 BD) Source: https://www.laboratorynotes.com/preparation-of-luria-bertani-lb-miller-broth/ Accessed: 2026-03-28 Constituent composition researched from product specification.

Composition

flowchart LR
    CultureMech_002612["sulfophobococcus_medium"]
    ing0_Yeast_extract["Yeast extract"]
    CultureMech_002612 --> ing0_Yeast_extract
    ing1_Tryptone["Tryptone"]
    CultureMech_002612 --> ing1_Tryptone
    ing2_Yeast_extract["Yeast extract"]
    CultureMech_002612 --> ing2_Yeast_extract
    ing3_Sodium_chloride["Sodium chloride"]
    CultureMech_002612 --> ing3_Sodium_chloride
    CHEBI_26710["CHEBI:26710"]
    ing3_Sodium_chloride -.-> CHEBI_26710
    ing4_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_002612 --> ing4_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing4_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing5_Na2_EDTA["Na2-EDTA"]
    CultureMech_002612 --> ing5_Na2_EDTA
    CHEBI_64734["CHEBI:64734"]
    ing5_Na2_EDTA -.-> CHEBI_64734
    ing6_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_002612 --> ing6_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing6_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing7_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_002612 --> ing7_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing7_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing8_KCl["KCl"]
    CultureMech_002612 --> ing8_KCl
    CHEBI_32588["CHEBI:32588"]
    ing8_KCl -.-> CHEBI_32588
    ing9_ZnCl2["ZnCl2"]
    CultureMech_002612 --> ing9_ZnCl2
    CHEBI_49976["CHEBI:49976"]
    ing9_ZnCl2 -.-> CHEBI_49976
    ing10_MnSO4_x_n_H2O["MnSO4 x n H2O"]
    CultureMech_002612 --> ing10_MnSO4_x_n_H2O
    CHEBI_86360["CHEBI:86360"]
    ing10_MnSO4_x_n_H2O -.-> CHEBI_86360
    ing11_Na2B4O7_x_10_H2O["Na2B4O7 x 10 H2O"]
    CultureMech_002612 --> ing11_Na2B4O7_x_10_H2O
    CHEBI_131366["CHEBI:131366"]
    ing11_Na2B4O7_x_10_H2O -.-> CHEBI_131366
    ing12_Glycine["Glycine"]
    CultureMech_002612 --> ing12_Glycine
    CHEBI_15428["CHEBI:15428"]
    ing12_Glycine -.-> CHEBI_15428
    ing13_Na2CO3["Na2CO3"]
    CultureMech_002612 --> ing13_Na2CO3
    CHEBI_29377["CHEBI:29377"]
    ing13_Na2CO3 -.-> CHEBI_29377
    ing14_Na2S_x_9_H2O["Na2S x 9 H2O"]
    CultureMech_002612 --> ing14_Na2S_x_9_H2O
    CHEBI_76209["CHEBI:76209"]
    ing14_Na2S_x_9_H2O -.-> CHEBI_76209
    ing15_Resazurin["Resazurin"]
    CultureMech_002612 --> ing15_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing15_Resazurin -.-> CHEBI_8806

Ingredients (16)

# Ingredient Concentration Ontology Notes
1 Yeast extract 1 G_PER_L
2 Tryptone
Multiple suppliers (Difco, Sigma, etc.) LB Medium (Luria-Bertani, Miller formulation) Multiple (L3522 Sigma, 244520 BD)
10.0 G_PER_L MICRO:0000182 (source link unavailable)
tryptone
Pancreatic digest of casein providing amino acids, peptides, and nitrogen; Constituent of LB Medium (Luria-Bertani, Miller formulation) commercial product
3 Yeast extract
Multiple suppliers (Difco, Sigma, etc.) LB Medium (Luria-Bertani, Miller formulation) Multiple (L3522 Sigma, 244520 BD)
5.0 G_PER_L FOODON:03315426
yeast extract
Autodigest of Saccharomyces cerevisiae providing vitamins, amino acids, and trace elements; Constituent of LB Medium (Luria-Bertani, Miller formulation) commercial product
4 Sodium chloride
Cl.Na 58.443 g/mol
Multiple suppliers (Difco, Sigma, etc.) LB Medium (Luria-Bertani, Miller formulation) Multiple (L3522 Sigma, 244520 BD)
10.0 G_PER_L CHEBI:26710
sodium chloride
Maintains osmotic equilibrium (Miller formulation); Constituent of LB Medium (Luria-Bertani, Miller formulation) commercial product
5 FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
0.05 G_PER_L CHEBI:75836
iron(2+) sulfate heptahydrate
6 Na2-EDTA
C10H14N2O8.2Na 336.208 g/mol
0.032 G_PER_L CHEBI:64734
EDTA disodium salt (anhydrous)
7 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
0.066 G_PER_L CHEBI:86158
calcium chloride dihydrate
8 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
0.031 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
9 KCl
Cl.K 74.551 g/mol
0.031 G_PER_L CHEBI:32588
potassium chloride
10 ZnCl2
2Cl.Zn 136.296 g/mol
0.0021 G_PER_L CHEBI:49976
zinc dichloride
11 MnSO4 x n H2O
Mn.O4S 151.001 g/mol
0.0023 G_PER_L CHEBI:86360
manganese(II) sulfate
12 Na2B4O7 x 10 H2O
10H2O.H4B4O9.2Na 417.401 g/mol
0.0018 G_PER_L CHEBI:131366
disodium tetraborate decahydrate
13 Glycine
C2H5NO2 75.067 g/mol
1.5 G_PER_L CHEBI:15428
glycine
14 Na2CO3
CO3.2Na 105.988 g/mol
0.23 G_PER_L CHEBI:29377
sodium carbonate
15 Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
0.5 G_PER_L CHEBI:76209
sodium sulfide nonahydrate
16 Resazurin
C12H7NO4 229.191 g/mol
0.001 G_PER_L CHEBI:8806
Resazurin

Preparation

  1. Mix components except yeast extract, bovine serum albumin and Na2S x 9H2O. Bring to a boil for 5-10 sec and flush with N2. Adjust pH to 7.6 at 80-90C. After cooling to room temperature, dispense the medium into serum bottles under a N2 atmosphere, seal with butyl rubber stoppers and autoclave. Separately autoclave yeast extract as a 10% solution and neutralized Na2S x 9H2O as a 5% solution under a N2 atmosphere. Filter-sterilize bovine serum albumin as a 10% (w/v) solution under a N2 atmosphere. Before inoculation, aseptically and anaerobically add the yeast extract, bovine serum albumin and neutralized Na2S x 9H2O solutions.

Target organisms

No target organisms are recorded.

Provenance

Merged from 1 source record.

TimestampCuratorActionNotes
2026-01-26T17:53:16.093680Z mediadive-import Imported from MediaDive Source: JCM, ID: J252
2026-03-13T06:19:14.547484Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:002612
2026-03-17T06:29:57.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:27.825693+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "SULFOPHOBOCOCCUS MEDIUM" to "sulfophobococcus_medium" for consistent matching
2026-06-05T07:41:47.515753+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 10 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:47:12.047386+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:04:32.854368+00:00 merge_recipes.py MERGED_RECIPES merged 1 source recipe(s) on fingerprint 4b48ea64d9669915642158d3263495491dda5696c54ff875140a9cfb79c22df7