Overview
- External ontology
- mediadive.medium:J625 (source link unavailable) — MODIFIED THERMUS SV MEDIUM
- Applications
-
- Microbial cultivation
- Synonyms
-
- {'name': 'modified_thermus_medium_with_3_nacl', 'source': 'MediaDive', 'source_id': 'mediadive.medium:J624', 'original_category': 'bacterial'}
- Notes
- Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=625
Composition
flowchart LR
CultureMech_002971["modified_thermus_sv_medium"]
ing0_Peptone["Peptone"]
CultureMech_002971 --> ing0_Peptone
ing1_Yeast_extract["Yeast extract"]
CultureMech_002971 --> ing1_Yeast_extract
ing2_Sodium_glutamate_monohydrate["Sodium glutamate monohydrate"]
CultureMech_002971 --> ing2_Sodium_glutamate_monohydrate
CHEBI_232425["CHEBI:232425"]
ing2_Sodium_glutamate_monohydrate -.-> CHEBI_232425
ing3_NaCl["NaCl"]
CultureMech_002971 --> ing3_NaCl
CHEBI_26710["CHEBI:26710"]
ing3_NaCl -.-> CHEBI_26710
ing4_Nitrilotriacetic_acid["Nitrilotriacetic acid"]
CultureMech_002971 --> ing4_Nitrilotriacetic_acid
CHEBI_44557["CHEBI:44557"]
ing4_Nitrilotriacetic_acid -.-> CHEBI_44557
ing5_CaSO4_x_2_H2O["CaSO4 x 2 H2O"]
CultureMech_002971 --> ing5_CaSO4_x_2_H2O
CHEBI_32583["CHEBI:32583"]
ing5_CaSO4_x_2_H2O -.-> CHEBI_32583
ing6_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_002971 --> ing6_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing6_MgSO4_x_7_H2O -.-> CHEBI_31795
ing7_KNO3["KNO3"]
CultureMech_002971 --> ing7_KNO3
CHEBI_63043["CHEBI:63043"]
ing7_KNO3 -.-> CHEBI_63043
ing8_NaNO3["NaNO3"]
CultureMech_002971 --> ing8_NaNO3
CHEBI_63005["CHEBI:63005"]
ing8_NaNO3 -.-> CHEBI_63005
ing9_Na2HPO4["Na2HPO4"]
CultureMech_002971 --> ing9_Na2HPO4
CHEBI_34683["CHEBI:34683"]
ing9_Na2HPO4 -.-> CHEBI_34683
ing10_FeCl3_x_6_H2O["FeCl3 x 6 H2O"]
CultureMech_002971 --> ing10_FeCl3_x_6_H2O
CHEBI_86254["CHEBI:86254"]
ing10_FeCl3_x_6_H2O -.-> CHEBI_86254
Ingredients (11)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Peptone | 2.9703 G_PER_L | ||
| 2 | Yeast extract | 0.990099 G_PER_L | ||
| 3 |
Sodium glutamate monohydrate
C5H8NO4.H2O.Na 187.127 g/mol
|
0.990099 G_PER_L |
CHEBI:232425
monosodium L-glutamate hydrate
|
|
| 4 |
NaCl
Cl.Na 58.443 g/mol
|
29.7814314 G_PER_L |
CHEBI:26710
sodium chloride
|
[Merged 2 duplicates: 29.703, 0.0784314] |
| 5 |
Nitrilotriacetic acid
C6H9NO6 191.139 g/mol
|
0.980392 G_PER_L |
CHEBI:44557
nitrilotriacetic acid
|
|
| 6 |
CaSO4 x 2 H2O
Ca.2H2O.O4S 172.171 g/mol
|
0.588235 G_PER_L |
CHEBI:32583
calcium sulfate dihydrate
|
|
| 7 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.980392 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 8 |
KNO3
K.NO3 101.102 g/mol
|
1.0098 G_PER_L |
CHEBI:63043
potassium nitrate
|
|
| 9 |
NaNO3
NO3.Na 84.994 g/mol
|
6.7549 G_PER_L |
CHEBI:63005
sodium nitrate
|
|
| 10 |
Na2HPO4
HO4P.2Na 141.958 g/mol
|
1.08824 G_PER_L |
CHEBI:34683
disodium hydrogenphosphate
|
|
| 11 |
FeCl3 x 6 H2O
Cl3Fe.6H2O 270.294 g/mol
|
10 G_PER_L |
CHEBI:86254
iron trichloride hexahydrate
|
Preparation
- Use Medium No. 624 supplemented with 3.0 g/L L-proline. Trace vitamins (see Medium No. 197, 10 ml/L) can be substituted for L-proline.
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- modified_thermus_medium_with_3_nacl (CultureMech:002970)
- modified_thermus_sv_medium (CultureMech:002971)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:17.124017Z | mediadive-import | Imported from MediaDive | Source: JCM, ID: J625 |
| 2026-02-03T11:26:55.526195 | quality-tagger-v1.0 | Added data quality flag | Marked as incomplete_composition due to placeholder ingredients |
| 2026-03-13T06:19:16.895980Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:002971 |
| 2026-03-17T19:45:30.512432+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "MODIFIED THERMUS SV MEDIUM" to "modified_thermus_sv_medium" for consistent matching |
| 2026-04-04T18:49:19.889402 | copy_referenced_compositions | RESOLVED_REFERENCE | Resolved reference by copying from modified_thermus_medium_with_3_nacl (CultureMech:002970) |
| 2026-05-16T08:58:10.349628+00:00 | migrate_data_quality_flags.py | MIGRATED_DATA_QUALITY_FLAGS | dict(2 keys) -> list(1 entries) |
| 2026-06-05T07:41:37.933648+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 7 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:37:35.668019+00:00 | primary-term-regrounding-v1.0 | Re-grounded wrong primary term id (OAK-verified) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-06-10T07:47:09.010273+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:49.943773+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: modified_thermus_medium_with_3_nacl, modified_thermus_sv_medium |
| 2026-08-06T03:05:49.943809+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint 55aa403eb26f8343ae457db5124cea1f3c161c384027e2b03502e55f4bda541b |