mineral_medium_for_thiomonas_islandicum

CultureMech:003117 bacterial COMPLEX LIQUID
Original name: MINERAL MEDIUM FOR THIOMONAS ISLANDICUM

Overview

External ontology
mediadive.medium:J775 (source link unavailable) — MINERAL MEDIUM FOR THIOMONAS ISLANDICUM
Applications
  • Microbial cultivation
Synonyms
  • {'name': 'mineral_medium_for_hydrogenophilus_islandicum', 'source': 'MediaDive', 'source_id': 'mediadive.medium:J774', 'original_category': 'bacterial'}
pH
4.0
Notes
Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=775

Composition

flowchart LR
    CultureMech_003117["mineral_medium_for_thiomonas_islandicum"]
    ing0_KH2PO4["KH2PO4"]
    CultureMech_003117 --> ing0_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing0_KH2PO4 -.-> CHEBI_63036
    ing1_Na2HPO4_x_6_H2O["Na2HPO4 x 6 H2O"]
    CultureMech_003117 --> ing1_Na2HPO4_x_6_H2O
    CHEBI_34683["CHEBI:34683"]
    ing1_Na2HPO4_x_6_H2O -.-> CHEBI_34683
    ing2_NH4Cl["NH4Cl"]
    CultureMech_003117 --> ing2_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing2_NH4Cl -.-> CHEBI_31206
    ing3_NaHCO3["NaHCO3"]
    CultureMech_003117 --> ing3_NaHCO3
    CHEBI_32139["CHEBI:32139"]
    ing3_NaHCO3 -.-> CHEBI_32139
    ing4_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_003117 --> ing4_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing4_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing5_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_003117 --> ing5_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing5_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing6_Fe_NH4_citrate["Fe(NH4)citrate"]
    CultureMech_003117 --> ing6_Fe_NH4_citrate
    CHEBI_31604["CHEBI:31604"]
    ing6_Fe_NH4_citrate -.-> CHEBI_31604
    ing7_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
    CultureMech_003117 --> ing7_ZnSO4_x_7_H2O
    CHEBI_32312["CHEBI:32312"]
    ing7_ZnSO4_x_7_H2O -.-> CHEBI_32312
    ing8_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_003117 --> ing8_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing8_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing9_H3BO3["H3BO3"]
    CultureMech_003117 --> ing9_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing9_H3BO3 -.-> CHEBI_33118
    ing10_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
    CultureMech_003117 --> ing10_CoCl2_x_6_H2O
    CHEBI_53503["CHEBI:53503"]
    ing10_CoCl2_x_6_H2O -.-> CHEBI_53503
    ing11_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
    CultureMech_003117 --> ing11_CuCl2_x_2_H2O
    CHEBI_86318["CHEBI:86318"]
    ing11_CuCl2_x_2_H2O -.-> CHEBI_86318
    ing12_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_003117 --> ing12_NiCl2_x_6_H2O
    CHEBI_34887["CHEBI:34887"]
    ing12_NiCl2_x_6_H2O -.-> CHEBI_34887
    ing13_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_003117 --> ing13_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing13_Na2MoO4_x_2_H2O -.-> CHEBI_75213

Ingredients (14)

# Ingredient Concentration Ontology Notes
1 KH2PO4
H2O4P.K 136.084 g/mol
2.28856 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
2 Na2HPO4 x 6 H2O
HO4P.2Na 141.958 g/mol
2.88557 G_PER_L CHEBI:34683
disodium hydrogenphosphate
3 NH4Cl
Cl.H4N 53.492 g/mol
0.995025 G_PER_L CHEBI:31206
ammonium chloride
4 NaHCO3
CHO3.Na 84.006 g/mol
0.497512 G_PER_L CHEBI:32139
sodium hydrogencarbonate
5 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
0.0995025 G_PER_L CHEBI:86158
calcium chloride dihydrate
6 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
100 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
7 Fe(NH4)citrate 20 G_PER_L CHEBI:31604
ferric ammonium citrate
8 ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
0.1 G_PER_L CHEBI:32312
zinc sulfate heptahydrate
9 MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
0.03 G_PER_L CHEBI:86368
manganese(II) chloride tetrahydrate
10 H3BO3
H3BO3 61.833 g/mol
0.3 G_PER_L CHEBI:33118
boric acid
11 CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
0.2 G_PER_L CHEBI:53503
cobalt chloride hexahydrate
12 CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
0.01 G_PER_L CHEBI:86318
copper(II) chloride dihydrate
13 NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
0.02 G_PER_L CHEBI:34887
nickel dichloride
14 Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
0.03 G_PER_L CHEBI:75213
sodium molybdate dihydrate

Preparation

  1. Use Medium No. 774 and adjust pH to 4.0.

Target organisms

No target organisms are recorded.

Provenance

Merged from 2 source records.

TimestampCuratorActionNotes
2026-01-26T17:53:17.562653Z mediadive-import Imported from MediaDive Source: JCM, ID: J775
2026-02-03T11:26:56.056168 quality-tagger-v1.0 Added data quality flag Marked as incomplete_composition due to placeholder ingredients
2026-03-13T06:19:17.934994Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:003117
2026-03-17T19:45:31.724427+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "MINERAL MEDIUM FOR THIOMONAS ISLANDICUM" to "mineral_medium_for_thiomonas_islandicum" for consistent matching
2026-04-04T18:49:20.010018 copy_referenced_compositions RESOLVED_REFERENCE Resolved reference by copying from mineral_medium_for_hydrogenophilus_islandicum (CultureMech:003116)
2026-05-16T08:58:08.054379+00:00 migrate_data_quality_flags.py MIGRATED_DATA_QUALITY_FLAGS dict(2 keys) -> list(1 entries)
2026-06-05T07:41:34.166866+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 14 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:47:07.888730+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:05:45.668232+00:00 recipe-merger Merged 2 duplicate recipes into canonical record Sources: mineral_medium_for_hydrogenophilus_islandicum, mineral_medium_for_thiomonas_islandicum
2026-08-06T03:05:45.668358+00:00 merge_recipes.py MERGED_RECIPES merged 2 source recipe(s) on fingerprint b3cbc8b88193ab4410c2185971e6a8c3cf17587ac9e1c401f8a8412eeebc7096