mineral_medium_for_thiomonas_islandicum (CultureMech:003117)

Overview

External ontology

mediadive.medium:J775 (source link unavailable) — MINERAL MEDIUM FOR THIOMONAS ISLANDICUM

Applications

Microbial cultivation

pH

4.0

Notes

Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=775

Composition

flowchart LR
    CultureMech_003117["mineral_medium_for_thiomonas_islandicum"]
    ing0_KH2PO4["KH2PO4"]
    CultureMech_003117 --> ing0_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing0_KH2PO4 -.-> CHEBI_63036
    ing1_Na2HPO4_x_6_H2O["Na2HPO4 x 6 H2O"]
    CultureMech_003117 --> ing1_Na2HPO4_x_6_H2O
    CHEBI_34683["CHEBI:34683"]
    ing1_Na2HPO4_x_6_H2O -.-> CHEBI_34683
    ing2_NH4Cl["NH4Cl"]
    CultureMech_003117 --> ing2_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing2_NH4Cl -.-> CHEBI_31206
    ing3_NaHCO3["NaHCO3"]
    CultureMech_003117 --> ing3_NaHCO3
    CHEBI_32139["CHEBI:32139"]
    ing3_NaHCO3 -.-> CHEBI_32139
    ing4_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_003117 --> ing4_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing4_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing5_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_003117 --> ing5_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing5_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing6_Fe_NH4_citrate["Fe(NH4)citrate"]
    CultureMech_003117 --> ing6_Fe_NH4_citrate
    CHEBI_31604["CHEBI:31604"]
    ing6_Fe_NH4_citrate -.-> CHEBI_31604
    ing7_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
    CultureMech_003117 --> ing7_ZnSO4_x_7_H2O
    CHEBI_32312["CHEBI:32312"]
    ing7_ZnSO4_x_7_H2O -.-> CHEBI_32312
    ing8_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_003117 --> ing8_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing8_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing9_H3BO3["H3BO3"]
    CultureMech_003117 --> ing9_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing9_H3BO3 -.-> CHEBI_33118
    ing10_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
    CultureMech_003117 --> ing10_CoCl2_x_6_H2O
    CHEBI_53503["CHEBI:53503"]
    ing10_CoCl2_x_6_H2O -.-> CHEBI_53503
    ing11_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
    CultureMech_003117 --> ing11_CuCl2_x_2_H2O
    CHEBI_86318["CHEBI:86318"]
    ing11_CuCl2_x_2_H2O -.-> CHEBI_86318
    ing12_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_003117 --> ing12_NiCl2_x_6_H2O
    CHEBI_34887["CHEBI:34887"]
    ing12_NiCl2_x_6_H2O -.-> CHEBI_34887
    ing13_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_003117 --> ing13_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing13_Na2MoO4_x_2_H2O -.-> CHEBI_75213

Ingredients (14)

#	Ingredient	Concentration	Ontology	Notes
1	KH2PO4 H2O4P.K 136.084 g/mol	2.28856 G_PER_L	CHEBI:63036 potassium dihydrogen phosphate	Copied from referenced JCM Medium 774
2	Na2HPO4 x 6 H2O HO4P.2Na 141.958 g/mol	2.88557 G_PER_L	CHEBI:34683 disodium hydrogenphosphate	Copied from referenced JCM Medium 774
3	NH4Cl Cl.H4N 53.492 g/mol	0.995025 G_PER_L	CHEBI:31206 ammonium chloride	Copied from referenced JCM Medium 774
4	NaHCO3 CHO3.Na 84.006 g/mol	0.497512 G_PER_L	CHEBI:32139 sodium hydrogencarbonate	Copied from referenced JCM Medium 774
5	CaCl2 x 2 H2O Ca.2Cl.2H2O 147.014 g/mol	0.0995025 G_PER_L	CHEBI:86158 calcium chloride dihydrate	Copied from referenced JCM Medium 774
6	MgSO4 x 7 H2O 7H2O.Mg.O4S 246.473 g/mol	100 G_PER_L	CHEBI:31795 magnesium sulfate heptahydrate	Copied from referenced JCM Medium 774
7	Fe(NH4)citrate	20 G_PER_L	CHEBI:31604 ferric ammonium citrate	Copied from referenced JCM Medium 774
8	ZnSO4 x 7 H2O 7H2O.O4S.Zn 287.558 g/mol	0.1 G_PER_L	CHEBI:32312 zinc sulfate heptahydrate	Copied from referenced JCM Medium 774
9	MnCl2 x 4 H2O Cl2Mn.4H2O 197.904 g/mol	0.03 G_PER_L	CHEBI:86368 manganese(II) chloride tetrahydrate	Copied from referenced JCM Medium 774
10	H3BO3 H3BO3 61.833 g/mol	0.3 G_PER_L	CHEBI:33118 boric acid	Copied from referenced JCM Medium 774
11	CoCl2 x 6 H2O 2Cl.Co.6H2O 237.929 g/mol	0.2 G_PER_L	CHEBI:53503 cobalt chloride hexahydrate	Copied from referenced JCM Medium 774
12	CuCl2 x 2 H2O Cl2Cu.2H2O 170.482 g/mol	0.01 G_PER_L	CHEBI:86318 copper(II) chloride dihydrate	Copied from referenced JCM Medium 774
13	NiCl2 x 6 H2O Cl2Ni 129.599 g/mol	0.02 G_PER_L	CHEBI:34887 nickel dichloride	Copied from referenced JCM Medium 774
14	Na2MoO4 x 2 H2O 2H2O.MoO4.2Na 241.946 g/mol	0.03 G_PER_L	CHEBI:75213 sodium molybdate dihydrate	Copied from referenced JCM Medium 774

Preparation

Use Medium No. 774 and adjust pH to 4.0.

Target organisms

No target organisms are recorded.

Provenance

Timestamp	Curator	Action	Notes
2026-01-26T17:53:17.562653Z	mediadive-import	Imported from MediaDive	Source: JCM, ID: J775
2026-02-03T11:26:56.056168	quality-tagger-v1.0	Added data quality flag	Marked as incomplete_composition due to placeholder ingredients
2026-03-13T06:19:17.934994Z	culturemech-id-assigner-v1.0	Assigned CultureMech ID	Assigned stable identifier: CultureMech:003117
2026-03-17T19:45:31.724427+00:00	normalize_media_names_to_snake_case.py	NAME_NORMALIZED	Normalized name from "MINERAL MEDIUM FOR THIOMONAS ISLANDICUM" to "mineral_medium_for_thiomonas_islandicum" for consistent matching
2026-04-04T18:49:20.010018	copy_referenced_compositions	RESOLVED_REFERENCE	Resolved reference by copying from mineral_medium_for_hydrogenophilus_islandicum (CultureMech:003116)
2026-05-16T08:58:08.054379+00:00	migrate_data_quality_flags.py	MIGRATED_DATA_QUALITY_FLAGS	dict(2 keys) -> list(1 entries)
2026-06-05T07:41:34.166866+00:00	mim-legacy-to-chebi-migration-v1.0	Refreshed legacy MediaIngredientMech links to CHEBI keying	Replaced 14 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:47:07.888730+00:00	primary-term-label-canonicalization-v1.0	Canonicalized primary term label to OBO canonical (OAK)	3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.