modified_desulfovibrio_medium (CultureMech:003178)

Overview

External ontology

mediadive.medium:J834 (source link unavailable) — MODIFIED DESULFOVIBRIO MEDIUM

Applications

Microbial cultivation

Synonyms

{'name': 'desulfovibrio_medium', 'source': 'MediaDive', 'source_id': 'mediadive.medium:J389', 'original_category': 'bacterial'}
{'name': 'desulfovibrio_postgate_medium', 'source': 'MediaDive', 'source_id': 'mediadive.medium:63', 'original_category': 'bacterial'}
{'name': 'desulfovibrio_marine_medium', 'source': 'MediaDive', 'source_id': 'mediadive.medium:J750', 'original_category': 'specialized'}

Notes

Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=834

Composition

flowchart LR
    CultureMech_003178["modified_desulfovibrio_medium"]
    ing0_K2HPO4["K2HPO4"]
    CultureMech_003178 --> ing0_K2HPO4
    CHEBI_131527["CHEBI:131527"]
    ing0_K2HPO4 -.-> CHEBI_131527
    ing1_NH4Cl["NH4Cl"]
    CultureMech_003178 --> ing1_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing1_NH4Cl -.-> CHEBI_31206
    ing2_Na2SO4["Na2SO4"]
    CultureMech_003178 --> ing2_Na2SO4
    CHEBI_32149["CHEBI:32149"]
    ing2_Na2SO4 -.-> CHEBI_32149
    ing3_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_003178 --> ing3_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing3_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing4_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_003178 --> ing4_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing4_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing5_Sodium_lactate["Sodium lactate"]
    CultureMech_003178 --> ing5_Sodium_lactate
    CHEBI_75228["CHEBI:75228"]
    ing5_Sodium_lactate -.-> CHEBI_75228
    ing6_Yeast_extract["Yeast extract"]
    CultureMech_003178 --> ing6_Yeast_extract
    ing7_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_003178 --> ing7_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing7_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing8_Sodium_thioglycolate["Sodium thioglycolate"]
    CultureMech_003178 --> ing8_Sodium_thioglycolate
    CHEBI_86481["CHEBI:86481"]
    ing8_Sodium_thioglycolate -.-> CHEBI_86481
    ing9_Ascorbic_acid["Ascorbic acid"]
    CultureMech_003178 --> ing9_Ascorbic_acid
    CHEBI_22652["CHEBI:22652"]
    ing9_Ascorbic_acid -.-> CHEBI_22652
    ing10_Resazurin["Resazurin"]
    CultureMech_003178 --> ing10_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing10_Resazurin -.-> CHEBI_8806

Ingredients (11)

#	Ingredient	Concentration	Ontology	Notes
1	K2HPO4 HO4P.2K 174.174 g/mol	0.5 G_PER_L	CHEBI:131527 dipotassium hydrogen phosphate	Copied from referenced JCM Medium 389
2	NH4Cl Cl.H4N 53.492 g/mol	1 G_PER_L	CHEBI:31206 ammonium chloride	Copied from referenced JCM Medium 389
3	Na2SO4 2Na.O4S 142.043 g/mol	1 G_PER_L	CHEBI:32149 sodium sulfate	Copied from referenced JCM Medium 389
4	MgSO4 x 7 H2O 7H2O.Mg.O4S 246.473 g/mol	2 G_PER_L	CHEBI:31795 magnesium sulfate heptahydrate	Copied from referenced JCM Medium 389
5	CaCl2 x 2 H2O Ca.2Cl.2H2O 147.014 g/mol	0.1 G_PER_L	CHEBI:86158 calcium chloride dihydrate	Copied from referenced JCM Medium 389
6	Sodium lactate C3H5O3.Na 112.06 g/mol	2 G_PER_L	CHEBI:75228 sodium lactate	Copied from referenced JCM Medium 389
7	Yeast extract	1 G_PER_L		Copied from referenced JCM Medium 389
8	FeSO4 x 7 H2O Fe.7H2O.O4S 278.013 g/mol	0.5 G_PER_L	CHEBI:75836 iron(2+) sulfate heptahydrate	Copied from referenced JCM Medium 389
9	Sodium thioglycolate C2H3O2S.Na 114.101 g/mol	0.1 G_PER_L	CHEBI:86481 sodium thioglycolate	Copied from referenced JCM Medium 389
10	Ascorbic acid	0.1 G_PER_L	CHEBI:22652 ascorbic acid	Copied from referenced JCM Medium 389
11	Resazurin C12H7NO4 229.191 g/mol	0.0005 G_PER_L	CHEBI:8806 Resazurin	Copied from referenced JCM Medium 389

Preparation

Use Medium No. 389 supplemented with 3 g/L Beef extract (BD-Difco).

Target organisms

No target organisms are recorded.

Provenance

Merged from 4 source records.

JCM_J834_MODIFIED_DESULFOVIBRIO_MEDIUM (CultureMech:003178)
desulfovibrio_medium (CultureMech:002746)
desulfovibrio_postgate_medium (CultureMech:001773)
desulfovibrio_marine_medium (normalized source unresolved)

Timestamp	Curator	Action	Notes
2026-01-26T17:53:17.748418Z	mediadive-import	Imported from MediaDive	Source: JCM, ID: J834
2026-02-03T11:26:56.290709	quality-tagger-v1.0	Added data quality flag	Marked as incomplete_composition due to placeholder ingredients
2026-03-13T06:19:18.391530Z	culturemech-id-assigner-v1.0	Assigned CultureMech ID	Assigned stable identifier: CultureMech:003178
2026-03-17T19:45:32.240030+00:00	normalize_media_names_to_snake_case.py	NAME_NORMALIZED	Normalized name from "MODIFIED DESULFOVIBRIO MEDIUM" to "modified_desulfovibrio_medium" for consistent matching
2026-04-04T18:49:19.661983	copy_referenced_compositions	RESOLVED_REFERENCE	Resolved reference by copying from desulfovibrio_medium (CultureMech:002746)
2026-05-16T08:57:04.899339+00:00	migrate_data_quality_flags.py	MIGRATED_DATA_QUALITY_FLAGS	dict(2 keys) -> list(1 entries)
2026-06-05T07:40:17.751606+00:00	mim-legacy-to-chebi-migration-v1.0	Refreshed legacy MediaIngredientMech links to CHEBI keying	Replaced 10 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:43.123760+00:00	primary-term-label-canonicalization-v1.0	Canonicalized primary term label to OBO canonical (OAK)	3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:04:37.325294+00:00	recipe-merger	Merged 4 duplicate recipes into canonical record	Sources: JCM_J834_MODIFIED_DESULFOVIBRIO_MEDIUM, desulfovibrio_medium, desulfovibrio_postgate_medium, desulfovibrio_marine_medium
2026-08-06T03:04:37.325346+00:00	merge_recipes.py	MERGED_RECIPES	merged 4 source recipe(s) on fingerprint 77287fa714c07ffb895ff25ea4ec34d4416d76c2b93c919bf1ba1fe314df1ef9