Overview
- External ontology
- mediadive.medium:J389 (source link unavailable) — DESULFOVIBRIO MEDIUM
- Applications
-
- Microbial cultivation
- pH
- 7.8
- Notes
- Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=389
Composition
flowchart LR
CultureMech_002746["desulfovibrio_medium"]
ing0_K2HPO4["K2HPO4"]
CultureMech_002746 --> ing0_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing0_K2HPO4 -.-> CHEBI_131527
ing1_NH4Cl["NH4Cl"]
CultureMech_002746 --> ing1_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing1_NH4Cl -.-> CHEBI_31206
ing2_Na2SO4["Na2SO4"]
CultureMech_002746 --> ing2_Na2SO4
CHEBI_32149["CHEBI:32149"]
ing2_Na2SO4 -.-> CHEBI_32149
ing3_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_002746 --> ing3_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing3_MgSO4_x_7_H2O -.-> CHEBI_31795
ing4_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_002746 --> ing4_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing4_CaCl2_x_2_H2O -.-> CHEBI_86158
ing5_Sodium_lactate["Sodium lactate"]
CultureMech_002746 --> ing5_Sodium_lactate
CHEBI_75228["CHEBI:75228"]
ing5_Sodium_lactate -.-> CHEBI_75228
ing6_Yeast_extract["Yeast extract"]
CultureMech_002746 --> ing6_Yeast_extract
ing7_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_002746 --> ing7_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing7_FeSO4_x_7_H2O -.-> CHEBI_75836
ing8_Sodium_thioglycolate["Sodium thioglycolate"]
CultureMech_002746 --> ing8_Sodium_thioglycolate
CHEBI_86481["CHEBI:86481"]
ing8_Sodium_thioglycolate -.-> CHEBI_86481
ing9_Ascorbic_acid["Ascorbic acid"]
CultureMech_002746 --> ing9_Ascorbic_acid
CHEBI_22652["CHEBI:22652"]
ing9_Ascorbic_acid -.-> CHEBI_22652
ing10_Resazurin["Resazurin"]
CultureMech_002746 --> ing10_Resazurin
CHEBI_8806["CHEBI:8806"]
ing10_Resazurin -.-> CHEBI_8806
Ingredients (11)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
K2HPO4
HO4P.2K 174.174 g/mol
|
0.5 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 2 |
NH4Cl
Cl.H4N 53.492 g/mol
|
1 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 3 |
Na2SO4
2Na.O4S 142.043 g/mol
|
1 G_PER_L |
CHEBI:32149
sodium sulfate
|
|
| 4 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
2 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 5 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.1 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 6 |
Sodium lactate
C3H5O3.Na 112.06 g/mol
|
2 G_PER_L |
CHEBI:75228
sodium lactate
|
|
| 7 | Yeast extract | 1 G_PER_L | ||
| 8 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
0.5 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 9 |
Sodium thioglycolate
C2H3O2S.Na 114.101 g/mol
|
0.1 G_PER_L |
CHEBI:86481
sodium thioglycolate
|
|
| 10 | Ascorbic acid | 0.1 G_PER_L |
CHEBI:22652
ascorbic acid
|
|
| 11 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.0005 G_PER_L |
CHEBI:8806
Resazurin
|
Preparation
- Mix ingredients, except FeSO4 x 7H2O, sodium thioglycolate and ascorbic acid, bring to a boil, and cool down to room temperature under a N2 gas stream. Add FeSO4 x 7H2O in 10 ml distilled water, and sodium thioglycolate and ascorbic acid in 10 ml distilled water, and adjust pH to 7.8 with NaOH. While swirling the medium, dispense into culture vessels under a N2 gas stream, seal with butyl rubber stoppers, and autoclave. Adjust pH to 6.8-7.0, if necessary.
Target organisms and growth evidence
These are curated observations and conditions for named organisms; they do not imply universal growth suitability.
- Preferred term
- Desulfovibrio intestinalis
- Term
- Id
- NCBITaxon:58621
- Label
- Desulfovibrio intestinalis
- Growth metrics
- Doubling time minutes
- 750.0
- Temperature celsius
- 37.0
- Evidence
- Reference
- PMID:10380647
- Supports
- SUPPORT
- Snippet
- Fastest growth with a doubling time of 12.5 h was obtained at 37 degrees C and not at 28 degrees C, the temperature at which the termites were grown.
- Explanation
- Auto-applied from literature query: targeted: Desulfovibrio intestinalis doubling time
- Is max attainment
- True
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-26T17:53:16.481062Z | mediadive-import | Imported from MediaDive | Source: JCM, ID: J389 |
| 2026-03-13T06:19:15.450820Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:002746 |
| 2026-03-17T06:30:25.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:28.850565+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "DESULFOVIBRIO MEDIUM" to "desulfovibrio_medium" for consistent matching |
| 2026-05-04T07:57:10.548403+00:00 | literature_review_apply | ADDED_GROWTH_EVIDENCE | organisms_added=1 metrics_added=1 genomes_added=0 strain_mods_added=0 |
| 2026-06-05T07:40:57.882025+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 10 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:56.067933+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T00:58:02.739443+00:00 | curate_organism_culture_type.py | SET_ORGANISM_CULTURE_TYPE | Inferred isolate: 1 specific strain(s) named, no community signal (#142) |