desulfovibrio_medium

CultureMech:002746 bacterial COMPLEX LIQUID
Original name: DESULFOVIBRIO MEDIUM

Overview

External ontology
mediadive.medium:J389 (source link unavailable) — DESULFOVIBRIO MEDIUM
Applications
  • Microbial cultivation
pH
7.8
Notes
Source: JCM | Link: https://www.jcm.riken.jp/cgi-bin/jcm/jcm_grmd?GRMD=389

Composition

flowchart LR
    CultureMech_002746["desulfovibrio_medium"]
    ing0_K2HPO4["K2HPO4"]
    CultureMech_002746 --> ing0_K2HPO4
    CHEBI_131527["CHEBI:131527"]
    ing0_K2HPO4 -.-> CHEBI_131527
    ing1_NH4Cl["NH4Cl"]
    CultureMech_002746 --> ing1_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing1_NH4Cl -.-> CHEBI_31206
    ing2_Na2SO4["Na2SO4"]
    CultureMech_002746 --> ing2_Na2SO4
    CHEBI_32149["CHEBI:32149"]
    ing2_Na2SO4 -.-> CHEBI_32149
    ing3_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_002746 --> ing3_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing3_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing4_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_002746 --> ing4_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing4_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing5_Sodium_lactate["Sodium lactate"]
    CultureMech_002746 --> ing5_Sodium_lactate
    CHEBI_75228["CHEBI:75228"]
    ing5_Sodium_lactate -.-> CHEBI_75228
    ing6_Yeast_extract["Yeast extract"]
    CultureMech_002746 --> ing6_Yeast_extract
    ing7_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_002746 --> ing7_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing7_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing8_Sodium_thioglycolate["Sodium thioglycolate"]
    CultureMech_002746 --> ing8_Sodium_thioglycolate
    CHEBI_86481["CHEBI:86481"]
    ing8_Sodium_thioglycolate -.-> CHEBI_86481
    ing9_Ascorbic_acid["Ascorbic acid"]
    CultureMech_002746 --> ing9_Ascorbic_acid
    CHEBI_22652["CHEBI:22652"]
    ing9_Ascorbic_acid -.-> CHEBI_22652
    ing10_Resazurin["Resazurin"]
    CultureMech_002746 --> ing10_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing10_Resazurin -.-> CHEBI_8806

Ingredients (11)

# Ingredient Concentration Ontology Notes
1 K2HPO4
HO4P.2K 174.174 g/mol
0.5 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
2 NH4Cl
Cl.H4N 53.492 g/mol
1 G_PER_L CHEBI:31206
ammonium chloride
3 Na2SO4
2Na.O4S 142.043 g/mol
1 G_PER_L CHEBI:32149
sodium sulfate
4 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
2 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
5 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
0.1 G_PER_L CHEBI:86158
calcium chloride dihydrate
6 Sodium lactate
C3H5O3.Na 112.06 g/mol
2 G_PER_L CHEBI:75228
sodium lactate
7 Yeast extract 1 G_PER_L
8 FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
0.5 G_PER_L CHEBI:75836
iron(2+) sulfate heptahydrate
9 Sodium thioglycolate
C2H3O2S.Na 114.101 g/mol
0.1 G_PER_L CHEBI:86481
sodium thioglycolate
10 Ascorbic acid 0.1 G_PER_L CHEBI:22652
ascorbic acid
11 Resazurin
C12H7NO4 229.191 g/mol
0.0005 G_PER_L CHEBI:8806
Resazurin

Preparation

  1. Mix ingredients, except FeSO4 x 7H2O, sodium thioglycolate and ascorbic acid, bring to a boil, and cool down to room temperature under a N2 gas stream. Add FeSO4 x 7H2O in 10 ml distilled water, and sodium thioglycolate and ascorbic acid in 10 ml distilled water, and adjust pH to 7.8 with NaOH. While swirling the medium, dispense into culture vessels under a N2 gas stream, seal with butyl rubber stoppers, and autoclave. Adjust pH to 6.8-7.0, if necessary.

Target organisms and growth evidence

These are curated observations and conditions for named organisms; they do not imply universal growth suitability.

Provenance

TimestampCuratorActionNotes
2026-01-26T17:53:16.481062Z mediadive-import Imported from MediaDive Source: JCM, ID: J389
2026-03-13T06:19:15.450820Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:002746
2026-03-17T06:30:25.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:28.850565+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "DESULFOVIBRIO MEDIUM" to "desulfovibrio_medium" for consistent matching
2026-05-04T07:57:10.548403+00:00 literature_review_apply ADDED_GROWTH_EVIDENCE organisms_added=1 metrics_added=1 genomes_added=0 strain_mods_added=0
2026-06-05T07:40:57.882025+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 10 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:56.067933+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T00:58:02.739443+00:00 curate_organism_culture_type.py SET_ORGANISM_CULTURE_TYPE Inferred isolate: 1 specific strain(s) named, no community signal (#142)