Overview
- External ontology
- komodo.medium:1105 (source link unavailable) — NITRILIRUPTOR ALKALIPHILUS MEDIUM
- Applications
-
- Microbial cultivation
- pH
- 10.0
- Notes
- Source: KOMODO ModelSEED | ID: 1105 | DSMZ Medium: 1105 (mediadive.medium:1105) | Aerobic: No
Composition
flowchart LR
CultureMech_003805["nitriliruptor_alkaliphilus_medium"]
ing0_Na2CO3["Na2CO3"]
CultureMech_003805 --> ing0_Na2CO3
CHEBI_29377["CHEBI:29377"]
ing0_Na2CO3 -.-> CHEBI_29377
ing1_NaHCO3["NaHCO3"]
CultureMech_003805 --> ing1_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing1_NaHCO3 -.-> CHEBI_32139
ing2_NaCl["NaCl"]
CultureMech_003805 --> ing2_NaCl
CHEBI_26710["CHEBI:26710"]
ing2_NaCl -.-> CHEBI_26710
ing3_K2HPO4["K2HPO4"]
CultureMech_003805 --> ing3_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing3_K2HPO4 -.-> CHEBI_131527
ing4_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_003805 --> ing4_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing4_MgSO4_x_7_H2O -.-> CHEBI_31795
ing5_Na2S2O3_x_5_H2O["Na2S2O3 x 5 H2O"]
CultureMech_003805 --> ing5_Na2S2O3_x_5_H2O
CHEBI_32150["CHEBI:32150"]
ing5_Na2S2O3_x_5_H2O -.-> CHEBI_32150
ing6_Vitamin_B12["Vitamin B12"]
CultureMech_003805 --> ing6_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing6_Vitamin_B12 -.-> CHEBI_176843
ing7_Isobutyramide["Isobutyramide"]
CultureMech_003805 --> ing7_Isobutyramide
ing8_Na2S2O3["Na2S2O3"]
CultureMech_003805 --> ing8_Na2S2O3
CHEBI_132112["CHEBI:132112"]
ing8_Na2S2O3 -.-> CHEBI_132112
ing9_EDTA["EDTA"]
CultureMech_003805 --> ing9_EDTA
CHEBI_4735["CHEBI:4735"]
ing9_EDTA -.-> CHEBI_4735
ing10_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_003805 --> ing10_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing10_FeSO4_x_7_H2O -.-> CHEBI_75836
ing11_ZnSO4["ZnSO4"]
CultureMech_003805 --> ing11_ZnSO4
CHEBI_35176["CHEBI:35176"]
ing11_ZnSO4 -.-> CHEBI_35176
ing12_MnCl2["MnCl2"]
CultureMech_003805 --> ing12_MnCl2
CHEBI_63041["CHEBI:63041"]
ing12_MnCl2 -.-> CHEBI_63041
ing13_H3BO3["H3BO3"]
CultureMech_003805 --> ing13_H3BO3
CHEBI_33118["CHEBI:33118"]
ing13_H3BO3 -.-> CHEBI_33118
ing14_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_003805 --> ing14_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing14_CoCl2_x_6_H2O -.-> CHEBI_53503
ing15_CuCl2["CuCl2"]
CultureMech_003805 --> ing15_CuCl2
CHEBI_49553["CHEBI:49553"]
ing15_CuCl2 -.-> CHEBI_49553
ing16_NiCl2_x_2_H2O["NiCl2 x 2 H2O"]
CultureMech_003805 --> ing16_NiCl2_x_2_H2O
CHEBI_34887["CHEBI:34887"]
ing16_NiCl2_x_2_H2O -.-> CHEBI_34887
ing17_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_003805 --> ing17_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing17_Na2MoO4_x_2_H2O -.-> CHEBI_75213
Ingredients (18)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Na2CO3
CO3.2Na 105.988 g/mol
|
22 G_PER_L |
CHEBI:29377
sodium carbonate
|
|
| 2 |
NaHCO3
CHO3.Na 84.006 g/mol
|
8 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 3 |
NaCl
Cl.Na 58.443 g/mol
|
6 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 4 |
K2HPO4
HO4P.2K 174.174 g/mol
|
0.5 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 5 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.2 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 6 |
Na2S2O3 x 5 H2O
5H2O.2Na.O3S2 248.186 g/mol
|
10 G_PER_L |
CHEBI:32150
sodium thiosulfate pentahydrate
|
|
| 7 | Vitamin B12 | 0.0001 G_PER_L |
CHEBI:176843
vitamin B12
|
|
| 8 | Isobutyramide | 0.8712 G_PER_L | ||
| 9 |
Na2S2O3
2Na.O3S2 158.111 g/mol
|
500 G_PER_L |
CHEBI:132112
sodium thiosulfate
|
|
| 10 |
EDTA
C10H16N2O8 292.244 g/mol
|
5 G_PER_L |
CHEBI:4735
ethylenediaminetetraacetic acid
|
|
| 11 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
2 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 12 |
ZnSO4
O4S.Zn 161.453 g/mol
|
0.1 G_PER_L |
CHEBI:35176
zinc sulfate
|
|
| 13 |
MnCl2
Cl2Mn 125.844 g/mol
|
0.03 G_PER_L |
CHEBI:63041
manganese(II) chloride
|
|
| 14 |
H3BO3
H3BO3 61.833 g/mol
|
0.3 G_PER_L |
CHEBI:33118
boric acid
|
|
| 15 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.2 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 16 |
CuCl2
Cl2Cu 134.452 g/mol
|
0.01 G_PER_L |
CHEBI:49553
copper(II) chloride
|
|
| 17 |
NiCl2 x 2 H2O
Cl2Ni 129.599 g/mol
|
0.02 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 18 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.02 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_1105_NITRILIRUPTOR_ALKALIPHILUS_MEDIUM (CultureMech:003805)
- nitriliruptor_alkaliphilus_medium (CultureMech:000538)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:01.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1105 |
| 2026-02-03T11:19:08.535221 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1105 |
| 2026-02-06T05:10:35.855211Z | invalid-chebi-removal | Removed 1 invalid CHEBI ID(s) | Removed CHEBI IDs with invalid format (7+ digits) from MicrobeMediaParam source data |
| 2026-03-13T06:19:22.373681Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003805 |
| 2026-03-17T06:30:22.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:36.754074+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "NITRILIRUPTOR ALKALIPHILUS MEDIUM" to "nitriliruptor_alkaliphilus_medium" for consistent matching |
| 2026-06-05T07:40:18.994328+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 15 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:37:34.173707+00:00 | primary-term-regrounding-v1.0 | Re-grounded wrong primary term id (OAK-verified) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-06-10T07:46:43.494517+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 7 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:04:39.814296+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_1105_NITRILIRUPTOR_ALKALIPHILUS_MEDIUM, nitriliruptor_alkaliphilus_medium |
| 2026-08-06T03:04:39.814345+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint d449d074d6a72850d10acd5981f681d497ae82f6a45e9d965e54fa4befb2db32 |