Overview
- External ontology
- komodo.medium:1137 (source link unavailable) — RUBRITALEA medium
- Applications
-
- Microbial cultivation
- pH
- 7.5
- Notes
- Source: KOMODO ModelSEED | ID: 1137 | DSMZ Medium: 1137 (mediadive.medium:1137) | Aerobic: No
Composition
flowchart LR
CultureMech_003846["rubritalea_medium"]
ing0_Peptone["Peptone"]
CultureMech_003846 --> ing0_Peptone
ing1_Yeast_extract["Yeast extract"]
CultureMech_003846 --> ing1_Yeast_extract
ing2_Glucose["Glucose"]
CultureMech_003846 --> ing2_Glucose
CHEBI_17234["CHEBI:17234"]
ing2_Glucose -.-> CHEBI_17234
ing3_Tris_HCl["Tris-HCl"]
CultureMech_003846 --> ing3_Tris_HCl
ing4_Nitrilotriacetic_acid["Nitrilotriacetic acid"]
CultureMech_003846 --> ing4_Nitrilotriacetic_acid
CHEBI_44557["CHEBI:44557"]
ing4_Nitrilotriacetic_acid -.-> CHEBI_44557
ing5_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_003846 --> ing5_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing5_MgSO4_x_7_H2O -.-> CHEBI_31795
ing6_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_003846 --> ing6_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing6_CaCl2_x_2_H2O -.-> CHEBI_86158
ing7__NH4_6Mo7O24_x_4_H2O["(NH4)6Mo7O24 x 4 H2O"]
CultureMech_003846 --> ing7__NH4_6Mo7O24_x_4_H2O
CHEBI_91249["CHEBI:91249"]
ing7__NH4_6Mo7O24_x_4_H2O -.-> CHEBI_91249
ing8_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_003846 --> ing8_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing8_FeSO4_x_7_H2O -.-> CHEBI_75836
ing9_Na_EDTA["Na-EDTA"]
CultureMech_003846 --> ing9_Na_EDTA
CHEBI_64734["CHEBI:64734"]
ing9_Na_EDTA -.-> CHEBI_64734
ing10_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_003846 --> ing10_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing10_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing11_MnSO4_x_H2O["MnSO4 x H2O"]
CultureMech_003846 --> ing11_MnSO4_x_H2O
CHEBI_86364["CHEBI:86364"]
ing11_MnSO4_x_H2O -.-> CHEBI_86364
ing12_CuSO4_x_5_H2O["CuSO4 x 5 H2O"]
CultureMech_003846 --> ing12_CuSO4_x_5_H2O
CHEBI_31440["CHEBI:31440"]
ing12_CuSO4_x_5_H2O -.-> CHEBI_31440
ing13_Co_NO3_2_x_6_H2O["Co(NO3)2 x 6 H2O"]
CultureMech_003846 --> ing13_Co_NO3_2_x_6_H2O
CHEBI_86214["CHEBI:86214"]
ing13_Co_NO3_2_x_6_H2O -.-> CHEBI_86214
ing14_Na2B4O7_x_10_H2O["Na2B4O7 x 10 H2O"]
CultureMech_003846 --> ing14_Na2B4O7_x_10_H2O
CHEBI_131366["CHEBI:131366"]
ing14_Na2B4O7_x_10_H2O -.-> CHEBI_131366
ing15_NaCl["NaCl"]
CultureMech_003846 --> ing15_NaCl
CHEBI_26710["CHEBI:26710"]
ing15_NaCl -.-> CHEBI_26710
ing16_Na2SO4["Na2SO4"]
CultureMech_003846 --> ing16_Na2SO4
CHEBI_32149["CHEBI:32149"]
ing16_Na2SO4 -.-> CHEBI_32149
ing17_NaHCO3["NaHCO3"]
CultureMech_003846 --> ing17_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing17_NaHCO3 -.-> CHEBI_32139
ing18_KCl["KCl"]
CultureMech_003846 --> ing18_KCl
CHEBI_32588["CHEBI:32588"]
ing18_KCl -.-> CHEBI_32588
ing19_KBr["KBr"]
CultureMech_003846 --> ing19_KBr
CHEBI_32030["CHEBI:32030"]
ing19_KBr -.-> CHEBI_32030
ing20_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
CultureMech_003846 --> ing20_MgCl2_x_6_H2O
CHEBI_86345["CHEBI:86345"]
ing20_MgCl2_x_6_H2O -.-> CHEBI_86345
ing21_H3BO3["H3BO3"]
CultureMech_003846 --> ing21_H3BO3
CHEBI_33118["CHEBI:33118"]
ing21_H3BO3 -.-> CHEBI_33118
Ingredients (22)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Peptone | 1.5 G_PER_L | ||
| 2 | Yeast extract | 1.5 G_PER_L | ||
| 3 |
Glucose
C6H12O6 180.156 g/mol
|
1.5 G_PER_L |
CHEBI:17234
glucose
|
|
| 4 | Tris-HCl | 5 G_PER_L | ||
| 5 |
Nitrilotriacetic acid
C6H9NO6 191.139 g/mol
|
10 G_PER_L |
CHEBI:44557
nitrilotriacetic acid
|
|
| 6 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
29.7 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 7 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
7.685 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
[Merged 2 duplicates: 3.335, 4.35] |
| 8 |
(NH4)6Mo7O24 x 4 H2O
2H4N.MoO4 196.014 g/mol
|
0.00925 G_PER_L |
CHEBI:91249
ammonium molybdate
|
|
| 9 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
0.599 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
[Merged 2 duplicates: 0.099, 0.5] |
| 10 |
Na-EDTA
C10H14N2O8.2Na 336.208 g/mol
|
0.25 G_PER_L |
CHEBI:64734
EDTA disodium salt (anhydrous)
|
|
| 11 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
1.095 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
|
| 12 |
MnSO4 x H2O
H2O.Mn.O4S 169.016 g/mol
|
0.154 G_PER_L |
CHEBI:86364
manganese(II) sulfate monohydrate
|
|
| 13 |
CuSO4 x 5 H2O
Cu.5H2O.O4S 249.684 g/mol
|
0.0392 G_PER_L |
CHEBI:31440
copper(II) sulfate pentahydrate
|
|
| 14 |
Co(NO3)2 x 6 H2O
Co.6H2O.2NO3 291.031 g/mol
|
0.0248 G_PER_L |
CHEBI:86214
cobalt dinitrate hexahydrate
|
|
| 15 |
Na2B4O7 x 10 H2O
10H2O.H4B4O9.2Na 417.401 g/mol
|
0.0177 G_PER_L |
CHEBI:131366
disodium tetraborate decahydrate
|
|
| 16 |
NaCl
Cl.Na 58.443 g/mol
|
70.43 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 17 |
Na2SO4
2Na.O4S 142.043 g/mol
|
11.75 G_PER_L |
CHEBI:32149
sodium sulfate
|
|
| 18 |
NaHCO3
CHO3.Na 84.006 g/mol
|
2.88 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 19 |
KCl
Cl.K 74.551 g/mol
|
1.99 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 20 |
KBr
Br.K 119.002 g/mol
|
0.29 G_PER_L |
CHEBI:32030
potassium bromide
|
|
| 21 |
MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
|
31.86 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
|
| 22 |
H3BO3
H3BO3 61.833 g/mol
|
0.08 G_PER_L |
CHEBI:33118
boric acid
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_1137_RUBRITALEA_medium (CultureMech:003846)
- rubritalea_medium (CultureMech:000573)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:01.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1137 |
| 2026-02-03T11:19:05.119127 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1137 |
| 2026-02-06T05:10:29.798865Z | invalid-chebi-removal | Removed 1 invalid CHEBI ID(s) | Removed CHEBI IDs with invalid format (7+ digits) from MicrobeMediaParam source data |
| 2026-03-13T03:09:05.147244Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 2 duplicate ingredient(s) |
| 2026-03-13T06:19:22.685714Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003846 |
| 2026-03-17T06:30:11.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:37.109552+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "RUBRITALEA medium" to "rubritalea_medium" for consistent matching |
| 2026-06-05T07:40:19.276297+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 17 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:43.585322+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 4 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:04:40.473008+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_1137_RUBRITALEA_medium, rubritalea_medium |
| 2026-08-06T03:04:40.473052+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint ae50c6229d7f5293663fe2289ff8a6778f530f8abc5fe46ef614579fe47a47bb |