Overview
- External ontology
- komodo.medium:1180 (source link unavailable) — METHYLOMICROBIUM MEDIUM
- Applications
-
- Microbial cultivation
- Notes
- Source: KOMODO ModelSEED | ID: 1180 | DSMZ Medium: 1180 (mediadive.medium:1180) | Aerobic: No
Composition
flowchart LR
CultureMech_003900["methylomicrobium_medium"]
ing0_NaCl["NaCl"]
CultureMech_003900 --> ing0_NaCl
CHEBI_26710["CHEBI:26710"]
ing0_NaCl -.-> CHEBI_26710
ing1_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_003900 --> ing1_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing1_MgSO4_x_7_H2O -.-> CHEBI_31795
ing2_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_003900 --> ing2_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing2_CaCl2_x_2_H2O -.-> CHEBI_86158
ing3_KNO3["KNO3"]
CultureMech_003900 --> ing3_KNO3
CHEBI_63043["CHEBI:63043"]
ing3_KNO3 -.-> CHEBI_63043
ing4_NaHCO3["NaHCO3"]
CultureMech_003900 --> ing4_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing4_NaHCO3 -.-> CHEBI_32139
ing5_Na2CO3["Na2CO3"]
CultureMech_003900 --> ing5_Na2CO3
CHEBI_29377["CHEBI:29377"]
ing5_Na2CO3 -.-> CHEBI_29377
ing6_EDTA["EDTA"]
CultureMech_003900 --> ing6_EDTA
CHEBI_4735["CHEBI:4735"]
ing6_EDTA -.-> CHEBI_4735
ing7_CuCl2_x_5_H2O["CuCl2 x 5 H2O"]
CultureMech_003900 --> ing7_CuCl2_x_5_H2O
CHEBI_91245["CHEBI:91245"]
ing7_CuCl2_x_5_H2O -.-> CHEBI_91245
ing8_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_003900 --> ing8_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing8_FeSO4_x_7_H2O -.-> CHEBI_75836
ing9_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_003900 --> ing9_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing9_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing10_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_003900 --> ing10_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing10_NiCl2_x_6_H2O -.-> CHEBI_34887
ing11_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_003900 --> ing11_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing11_CoCl2_x_6_H2O -.-> CHEBI_53503
ing12_Na2MoO4["Na2MoO4"]
CultureMech_003900 --> ing12_Na2MoO4
CHEBI_75215["CHEBI:75215"]
ing12_Na2MoO4 -.-> CHEBI_75215
ing13_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_003900 --> ing13_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing13_MnCl2_x_4_H2O -.-> CHEBI_86368
ing14_H3BO3["H3BO3"]
CultureMech_003900 --> ing14_H3BO3
CHEBI_33118["CHEBI:33118"]
ing14_H3BO3 -.-> CHEBI_33118
ing15_KH2PO4["KH2PO4"]
CultureMech_003900 --> ing15_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing15_KH2PO4 -.-> CHEBI_63036
ing16_Na2HPO4_x_12_H2O["Na2HPO4 x 12 H2O"]
CultureMech_003900 --> ing16_Na2HPO4_x_12_H2O
CHEBI_34683["CHEBI:34683"]
ing16_Na2HPO4_x_12_H2O -.-> CHEBI_34683
Ingredients (17)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
NaCl
Cl.Na 58.443 g/mol
|
30 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 2 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.2 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 3 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.02 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 4 |
KNO3
K.NO3 101.102 g/mol
|
1 G_PER_L |
CHEBI:63043
potassium nitrate
|
|
| 5 |
NaHCO3
CHO3.Na 84.006 g/mol
|
4.20035 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 6 |
Na2CO3
CO3.2Na 105.988 g/mol
|
0.52994 G_PER_L |
CHEBI:29377
sodium carbonate
|
|
| 7 |
EDTA
C10H16N2O8 292.244 g/mol
|
5 G_PER_L |
CHEBI:4735
ethylenediaminetetraacetic acid
|
|
| 8 |
CuCl2 x 5 H2O
Cl2Cu.5H2O 224.527 g/mol
|
0.1 G_PER_L |
CHEBI:91245
copper(II) chloride pentahydrate
|
|
| 9 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
2 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 10 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
0.1 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
|
| 11 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.02 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 12 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.2 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 13 |
Na2MoO4
MoO4.2Na 205.916 g/mol
|
0.03 G_PER_L |
CHEBI:75215
sodium molybdate (anhydrous)
|
|
| 14 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.03 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
|
| 15 |
H3BO3
H3BO3 61.833 g/mol
|
0.03 G_PER_L |
CHEBI:33118
boric acid
|
|
| 16 |
KH2PO4
H2O4P.K 136.084 g/mol
|
14 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 17 |
Na2HPO4 x 12 H2O
HO4P.2Na 141.958 g/mol
|
30 G_PER_L |
CHEBI:34683
disodium hydrogenphosphate
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_1180_METHYLOMICROBIUM_MEDIUM (CultureMech:003900)
- methylomicrobium_medium (CultureMech:000622)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:01.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1180 |
| 2026-02-03T11:19:05.629624 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1180 |
| 2026-03-13T06:19:23.098253Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:003900 |
| 2026-03-17T06:30:13.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:37.594273+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "METHYLOMICROBIUM MEDIUM" to "methylomicrobium_medium" for consistent matching |
| 2026-06-05T07:40:19.601794+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 16 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:37:34.194791+00:00 | primary-term-regrounding-v1.0 | Re-grounded wrong primary term id (OAK-verified) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-06-10T07:46:43.695795+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 4 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:04:40.985270+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_1180_METHYLOMICROBIUM_MEDIUM, methylomicrobium_medium |
| 2026-08-06T03:04:40.985398+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint 1d071a92aa15415c17729977241ab2360e1c2547477141d02721115b7a25d4d3 |