methylobacterium_medium

CultureMech:004018 bacterial DEFINED SOLID_AGAR
Original name: METHYLOBACTERIUM MEDIUM

Overview

External ontology
komodo.medium:125 (source link unavailable) — METHYLOBACTERIUM MEDIUM
Applications
  • Microbial cultivation
Synonyms
  • {'name': 'medium_125_modified_for_dsm_23675', 'source': 'KOMODO', 'source_id': 'komodo.medium:125_23675', 'original_category': 'bacterial'}
  • {'name': 'medium_125_modified_for_dsm_23679', 'source': 'KOMODO', 'source_id': 'komodo.medium:125_23679', 'original_category': 'bacterial'}
  • {'name': 'medium_125_modified_for_dsm_8269', 'source': 'KOMODO', 'source_id': 'komodo.medium:125_8269', 'original_category': 'bacterial'}
pH
6.8
Notes
Source: KOMODO ModelSEED | ID: 125 | DSMZ Medium: 125 (mediadive.medium:125) | Aerobic: No

Composition

flowchart LR
    CultureMech_004018["methylobacterium_medium"]
    ing0_KNO3["KNO3"]
    CultureMech_004018 --> ing0_KNO3
    CHEBI_63043["CHEBI:63043"]
    ing0_KNO3 -.-> CHEBI_63043
    ing1_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_004018 --> ing1_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing1_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing2_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_004018 --> ing2_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing2_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing3_Na2HPO4["Na2HPO4"]
    CultureMech_004018 --> ing3_Na2HPO4
    CHEBI_34683["CHEBI:34683"]
    ing3_Na2HPO4 -.-> CHEBI_34683
    ing4_NaH2PO4["NaH2PO4"]
    CultureMech_004018 --> ing4_NaH2PO4
    CHEBI_37585["CHEBI:37585"]
    ing4_NaH2PO4 -.-> CHEBI_37585
    ing5_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_004018 --> ing5_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing5_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing6_CuSO4_x_5_H2O["CuSO4 x 5 H2O"]
    CultureMech_004018 --> ing6_CuSO4_x_5_H2O
    CHEBI_31440["CHEBI:31440"]
    ing6_CuSO4_x_5_H2O -.-> CHEBI_31440
    ing7_H3BO3["H3BO3"]
    CultureMech_004018 --> ing7_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing7_H3BO3 -.-> CHEBI_33118
    ing8_MnSO4_x_5_H2O["MnSO4 x 5 H2O"]
    CultureMech_004018 --> ing8_MnSO4_x_5_H2O
    CHEBI_131524["CHEBI:131524"]
    ing8_MnSO4_x_5_H2O -.-> CHEBI_131524
    ing9_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
    CultureMech_004018 --> ing9_ZnSO4_x_7_H2O
    CHEBI_32312["CHEBI:32312"]
    ing9_ZnSO4_x_7_H2O -.-> CHEBI_32312
    ing10_MoO3["MoO3"]
    CultureMech_004018 --> ing10_MoO3
    CHEBI_30627["CHEBI:30627"]
    ing10_MoO3 -.-> CHEBI_30627
    ing11_Agar["Agar"]
    CultureMech_004018 --> ing11_Agar
    CHEBI_2509["CHEBI:2509"]
    ing11_Agar -.-> CHEBI_2509

Ingredients (12)

# Ingredient Concentration Ontology Notes
1 KNO3
K.NO3 101.102 g/mol
1 G_PER_L CHEBI:63043
potassium nitrate
2 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
0.2 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
3 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
0.02 G_PER_L CHEBI:86158
calcium chloride dihydrate
4 Na2HPO4
HO4P.2Na 141.958 g/mol
0.23 G_PER_L CHEBI:34683
disodium hydrogenphosphate
5 NaH2PO4
H2O4P.Na 119.976 g/mol
0.07 G_PER_L CHEBI:37585
sodium dihydrogenphosphate
6 FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
0.001 G_PER_L CHEBI:75836
iron(2+) sulfate heptahydrate
7 CuSO4 x 5 H2O
Cu.5H2O.O4S 249.684 g/mol
5e-06 G_PER_L CHEBI:31440
copper(II) sulfate pentahydrate
8 H3BO3
H3BO3 61.833 g/mol
1e-05 G_PER_L CHEBI:33118
boric acid
9 MnSO4 x 5 H2O
5H2O.Mn.O4S 241.076 g/mol
1e-05 G_PER_L CHEBI:131524
manganese(II) sulfate pentahydrate
10 ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
7e-05 G_PER_L CHEBI:32312
zinc sulfate heptahydrate
11 MoO3
MoO3 143.937 g/mol
1e-05 G_PER_L CHEBI:30627
molybdenum trioxide
12 Agar 12 G_PER_L CHEBI:2509
agar

Target organisms

No target organisms are recorded.

Provenance

Merged from 5 source records.

TimestampCuratorActionNotes
2026-01-27T01:15:01.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 125
2026-02-03T11:18:54.282610 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 125
2026-03-13T06:19:24.173866Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:004018
2026-03-17T06:29:39.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:38.852073+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "METHYLOBACTERIUM MEDIUM" to "methylobacterium_medium" for consistent matching
2026-06-05T07:40:20.472716+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 11 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:37:34.219193+00:00 primary-term-regrounding-v1.0 Re-grounded wrong primary term id (OAK-verified) 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-06-10T07:46:43.980141+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:04:42.528459+00:00 recipe-merger Merged 5 duplicate recipes into canonical record Sources: KOMODO_125_METHYLOBACTERIUM_MEDIUM, medium_125_modified_for_dsm_23675, medium_125_modified_for_dsm_23679, medium_125_modified_for_dsm_8269, methylobacterium_medium
2026-08-06T03:04:42.528528+00:00 merge_recipes.py MERGED_RECIPES merged 5 source recipe(s) on fingerprint 8a113e78a8fd83628bd3a855599822da8329e13d155ed12acb81d2249e51c8fa