Overview
- External ontology
- komodo.medium:1265 (source link unavailable) — BACTEROIDES GALACTURONICUS medium
- Applications
-
- Microbial cultivation
- pH
- 7.1
- Notes
- Source: KOMODO ModelSEED | ID: 1265 | DSMZ Medium: 1265 (mediadive.medium:1265) | Aerobic: Yes
Composition
flowchart LR
CultureMech_004022["bacteroides_galacturonicus_medium"]
ing0_Sodium_polygalacturonate["Sodium polygalacturonate"]
CultureMech_004022 --> ing0_Sodium_polygalacturonate
ing1_Trypticase["Trypticase"]
CultureMech_004022 --> ing1_Trypticase
ing2_Yeast_extract["Yeast extract"]
CultureMech_004022 --> ing2_Yeast_extract
ing3_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_004022 --> ing3_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing3_MgSO4_x_7_H2O -.-> CHEBI_31795
ing4_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_004022 --> ing4_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing4_CaCl2_x_2_H2O -.-> CHEBI_86158
ing5_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_004022 --> ing5_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing5_FeSO4_x_7_H2O -.-> CHEBI_75836
ing6__NH4_2SO4["(NH4)2SO4"]
CultureMech_004022 --> ing6__NH4_2SO4
CHEBI_62946["CHEBI:62946"]
ing6__NH4_2SO4 -.-> CHEBI_62946
ing7_L_Cysteine["L-Cysteine"]
CultureMech_004022 --> ing7_L_Cysteine
CHEBI_17561["CHEBI:17561"]
ing7_L_Cysteine -.-> CHEBI_17561
ing8_Resazurin["Resazurin"]
CultureMech_004022 --> ing8_Resazurin
CHEBI_8806["CHEBI:8806"]
ing8_Resazurin -.-> CHEBI_8806
ing9_NaHCO3["NaHCO3"]
CultureMech_004022 --> ing9_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing9_NaHCO3 -.-> CHEBI_32139
Ingredients (10)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Sodium polygalacturonate | 4 G_PER_L | ||
| 2 | Trypticase | 5 G_PER_L |
MICRO:0000175 (source link unavailable)
Trypticase peptone
|
|
| 3 | Yeast extract | 2.5 G_PER_L | ||
| 4 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
2.5 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 5 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.15 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 6 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
0.02 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 7 |
(NH4)2SO4
2H4N.O4S 132.141 g/mol
|
1.4 G_PER_L |
CHEBI:62946
ammonium sulfate
|
|
| 8 |
L-Cysteine
C3H7NO2S 121.161 g/mol
|
1 G_PER_L |
CHEBI:17561
L-cysteine
|
|
| 9 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.001 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 10 |
NaHCO3
CHO3.Na 84.006 g/mol
|
2 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_1265_BACTEROIDES_GALACTURONICUS_medium (CultureMech:004022)
- bacteroides_galacturonicus_medium (CultureMech:000724)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:01.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 1265 |
| 2026-02-03T11:19:18.266223 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 1265 |
| 2026-03-13T06:19:24.211675Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:004022 |
| 2026-03-17T06:30:52.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:38.915876+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "BACTEROIDES GALACTURONICUS medium" to "bacteroides_galacturonicus_medium" for consistent matching |
| 2026-06-05T07:40:20.512180+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 7 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:43.995348+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-09-22T00:03:26.686152+00:00 | repair_rejected_peptone_groundings.py | CORRECTED_REJECTED_PEPTONE_GROUNDING | CultureMech #484. /ingredients/1/term/id: Trypticase CHEBI:78018 -> MICRO:0000175 (replace_term). Reviewed identities: https://github.com/CultureBotAI/MediaIngredientMech/tree/24562493919391df4468a4285b7c997960cc8868. Publication resolver: MIM label index 9f09e4fb97fb0e6cbbd6f25baca40b36512adb88. MediaDive source IDs and concentrations preserved. |
| 2026-09-22T00:08:34.602944+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_1265_BACTEROIDES_GALACTURONICUS_medium, bacteroides_galacturonicus_medium |
| 2026-09-22T00:08:34.602986+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint df75235dc22263e40b15dfa6d1367a70b8a879e1946bc8cd3cc74d979b348886 |