bacteroides_galacturonicus_medium (CultureMech:004022)

Overview

External ontology

komodo.medium:1265 (source link unavailable) — BACTEROIDES GALACTURONICUS medium

Applications

Microbial cultivation

pH

7.1

Notes

Source: KOMODO ModelSEED | ID: 1265 | DSMZ Medium: 1265 (mediadive.medium:1265) | Aerobic: Yes

Composition

flowchart LR
    CultureMech_004022["bacteroides_galacturonicus_medium"]
    ing0_Sodium_polygalacturonate["Sodium polygalacturonate"]
    CultureMech_004022 --> ing0_Sodium_polygalacturonate
    ing1_Trypticase["Trypticase"]
    CultureMech_004022 --> ing1_Trypticase
    ing2_Yeast_extract["Yeast extract"]
    CultureMech_004022 --> ing2_Yeast_extract
    ing3_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_004022 --> ing3_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing3_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing4_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_004022 --> ing4_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing4_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing5_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_004022 --> ing5_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing5_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing6__NH4_2SO4["(NH4)2SO4"]
    CultureMech_004022 --> ing6__NH4_2SO4
    CHEBI_62946["CHEBI:62946"]
    ing6__NH4_2SO4 -.-> CHEBI_62946
    ing7_L_Cysteine["L-Cysteine"]
    CultureMech_004022 --> ing7_L_Cysteine
    CHEBI_17561["CHEBI:17561"]
    ing7_L_Cysteine -.-> CHEBI_17561
    ing8_Resazurin["Resazurin"]
    CultureMech_004022 --> ing8_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing8_Resazurin -.-> CHEBI_8806
    ing9_NaHCO3["NaHCO3"]
    CultureMech_004022 --> ing9_NaHCO3
    CHEBI_32139["CHEBI:32139"]
    ing9_NaHCO3 -.-> CHEBI_32139

Ingredients (10)

#	Ingredient	Concentration	Ontology
1	Sodium polygalacturonate	4 G_PER_L
2	Trypticase	5 G_PER_L	MICRO:0000175 (source link unavailable) Trypticase peptone
3	Yeast extract	2.5 G_PER_L
4	MgSO4 x 7 H2O 7H2O.Mg.O4S 246.473 g/mol	2.5 G_PER_L	CHEBI:31795 magnesium sulfate heptahydrate
5	CaCl2 x 2 H2O Ca.2Cl.2H2O 147.014 g/mol	0.15 G_PER_L	CHEBI:86158 calcium chloride dihydrate
6	FeSO4 x 7 H2O Fe.7H2O.O4S 278.013 g/mol	0.02 G_PER_L	CHEBI:75836 iron(2+) sulfate heptahydrate
7	(NH4)2SO4 2H4N.O4S 132.141 g/mol	1.4 G_PER_L	CHEBI:62946 ammonium sulfate
8	L-Cysteine C3H7NO2S 121.161 g/mol	1 G_PER_L	CHEBI:17561 L-cysteine
9	Resazurin C12H7NO4 229.191 g/mol	0.001 G_PER_L	CHEBI:8806 Resazurin
10	NaHCO3 CHO3.Na 84.006 g/mol	2 G_PER_L	CHEBI:32139 sodium hydrogencarbonate

Target organisms

No target organisms are recorded.

Provenance

Timestamp	Curator	Action	Notes
2026-01-27T01:15:01.fZ	komodo-web-import	Imported from KOMODO web table	Source: KOMODO, ID: 1265
2026-02-03T11:19:18.266223	dsmz-resolver-v1.0	Enriched with DSMZ composition	Copied ingredients from DSMZ Medium 1265
2026-03-13T06:19:24.211675Z	culturemech-id-assigner-v1.0	Assigned CultureMech ID	Assigned stable identifier: CultureMech:004022
2026-03-17T06:30:52.000000Z	mediaingredientmech-enrichment-v1.0	Added MediaIngredientMech links	Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:38.915876+00:00	normalize_media_names_to_snake_case.py	NAME_NORMALIZED	Normalized name from "BACTEROIDES GALACTURONICUS medium" to "bacteroides_galacturonicus_medium" for consistent matching
2026-06-05T07:40:20.512180+00:00	mim-legacy-to-chebi-migration-v1.0	Refreshed legacy MediaIngredientMech links to CHEBI keying	Replaced 7 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:43.995348+00:00	primary-term-label-canonicalization-v1.0	Canonicalized primary term label to OBO canonical (OAK)	1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-09-22T00:03:26.686152+00:00	repair_rejected_peptone_groundings.py	CORRECTED_REJECTED_PEPTONE_GROUNDING	CultureMech #484. /ingredients/1/term/id: Trypticase CHEBI:78018 -> MICRO:0000175 (replace_term). Reviewed identities: https://github.com/CultureBotAI/MediaIngredientMech/tree/24562493919391df4468a4285b7c997960cc8868. Publication resolver: MIM label index 9f09e4fb97fb0e6cbbd6f25baca40b36512adb88. MediaDive source IDs and concentrations preserved.