halobacteria_medium

CultureMech:005104 archaea COMPLEX SOLID_AGAR
Original name: HALOBACTERIA medium

Overview

External ontology
komodo.medium:372 (source link unavailable) — HALOBACTERIA medium
Applications
  • Microbial cultivation
Synonyms
  • {'name': 'jcm_medium_no_1241', 'source': 'MediaDive', 'source_id': 'mediadive.medium:J1241', 'original_category': 'bacterial'}
  • {'name': 'medium_372_modified_for_dsm_18341', 'source': 'KOMODO', 'source_id': 'komodo.medium:372_18341', 'original_category': 'bacterial'}
  • {'name': 'medium_372_modified_for_dsm_18342', 'source': 'KOMODO', 'source_id': 'komodo.medium:372_18342', 'original_category': 'bacterial'}
  • {'name': 'medium_372_modified_for_dsm_19336', 'source': 'KOMODO', 'source_id': 'komodo.medium:372_19336', 'original_category': 'bacterial'}
  • {'name': 'medium_372_modified_for_dsm_21622', 'source': 'KOMODO', 'source_id': 'komodo.medium:372_21622', 'original_category': 'bacterial'}
  • {'name': 'medium_372_modified_for_dsm_21769', 'source': 'KOMODO', 'source_id': 'komodo.medium:372_21769', 'original_category': 'bacterial'}
  • {'name': 'medium_372_modified_for_dsm_21771', 'source': 'KOMODO', 'source_id': 'komodo.medium:372_21771', 'original_category': 'bacterial'}
  • {'name': 'medium_372_modified_for_dsm_23158', 'source': 'KOMODO', 'source_id': 'komodo.medium:372_23158', 'original_category': 'bacterial'}
  • {'name': 'medium_372_modified_for_dsm_23862', 'source': 'KOMODO', 'source_id': 'komodo.medium:372_23862', 'original_category': 'bacterial'}
pH range
{'min': 7.0, 'max': 7.2}
High-metal flag
True
Notes
Source: KOMODO ModelSEED | ID: 372 | DSMZ Medium: 372 (mediadive.medium:372) | Aerobic: No

Composition

flowchart LR
    CultureMech_005104["halobacteria_medium"]
    ing0_Yeast_extract["Yeast extract"]
    CultureMech_005104 --> ing0_Yeast_extract
    ing1_Casamino_acids["Casamino acids"]
    CultureMech_005104 --> ing1_Casamino_acids
    ing2_Na_glutamate["Na glutamate"]
    CultureMech_005104 --> ing2_Na_glutamate
    CHEBI_64220["CHEBI:64220"]
    ing2_Na_glutamate -.-> CHEBI_64220
    ing3_KCl["KCl"]
    CultureMech_005104 --> ing3_KCl
    CHEBI_32588["CHEBI:32588"]
    ing3_KCl -.-> CHEBI_32588
    ing4_Na3_citrate["Na3-citrate"]
    CultureMech_005104 --> ing4_Na3_citrate
    CHEBI_53258["CHEBI:53258"]
    ing4_Na3_citrate -.-> CHEBI_53258
    ing5_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_005104 --> ing5_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing5_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing6_NaCl["NaCl"]
    CultureMech_005104 --> ing6_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing6_NaCl -.-> CHEBI_26710
    ing7_FeCl2_x_4_H2O["FeCl2 x 4 H2O"]
    CultureMech_005104 --> ing7_FeCl2_x_4_H2O
    CHEBI_86249["CHEBI:86249"]
    ing7_FeCl2_x_4_H2O -.-> CHEBI_86249
    ing8_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_005104 --> ing8_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing8_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing9_Agar["Agar"]
    CultureMech_005104 --> ing9_Agar
    CHEBI_2509["CHEBI:2509"]
    ing9_Agar -.-> CHEBI_2509

Ingredients (10)

# Ingredient Concentration Ontology Notes
1 Yeast extract 5 G_PER_L
2 Casamino acids 5 G_PER_L
3 Na glutamate
C5H8NO4.Na 169.112 g/mol
1 G_PER_L CHEBI:64220
monosodium glutamate
4 KCl
Cl.K 74.551 g/mol
2 G_PER_L CHEBI:32588
potassium chloride
5 Na3-citrate
C6H5O7.3Na 258.069 g/mol
3 G_PER_L CHEBI:53258
sodium citrate
6 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
20 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
7 NaCl
Cl.Na 58.443 g/mol
200 G_PER_L CHEBI:26710
sodium chloride
8 FeCl2 x 4 H2O
Cl2Fe.4H2O 198.811 g/mol
0.036 G_PER_L CHEBI:86249
iron dichloride tetrahydrate
9 MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
0.00036 G_PER_L CHEBI:86368
manganese(II) chloride tetrahydrate
10 Agar 20 G_PER_L CHEBI:2509
agar

Target organisms

No target organisms are recorded.

Provenance

Merged from 11 source records.

TimestampCuratorActionNotes
2026-01-27T01:15:02.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 372
2026-02-03T11:18:58.295174 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 372
2026-03-13T06:19:30.112781Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:005104
2026-03-17T06:29:50.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:45.807355+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "HALOBACTERIA medium" to "halobacteria_medium" for consistent matching
2026-05-20T06:00:51.444559+00:00 migrate_ph_range.py MIGRATED_PH_RANGE ph_range '7.0-7.2' -> {'min': 7.0, 'max': 7.2}
2026-06-05T07:40:22.785452+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 9 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-08T23:19:27.939196+00:00 chebi-regrounding-v1.0 Corrected CHEBI ingredient grounding (audit G21/G22) Re-grounded 2 term reference(s) to the correct CHEBI (see reports/chebi_grounding_audit.md). Label-conditional fixes for pyridoxine/pyridoxamine, glycerol, MnSO4, Ca(NO3)2, selenate; casamino acids de-grounded (mixture, no single CHEBI).
2026-08-06T03:04:23.055992+00:00 recipe-merger Merged 11 duplicate recipes into canonical record Sources: KOMODO_372_HALOBACTERIA_medium, halobacteria_medium, jcm_medium_no_1241, medium_372_modified_for_dsm_18341, medium_372_modified_for_dsm_18342, medium_372_modified_for_dsm_19336, medium_372_modified_for_dsm_21622, medium_372_modified_for_dsm_21769, medium_372_modified_for_dsm_21771, medium_372_modified_for_dsm_23158, medium_372_modified_for_dsm_23862
2026-08-06T03:04:23.056094+00:00 merge_recipes.py MERGED_RECIPES merged 11 source recipe(s) on fingerprint a38d0d843e9da3abc9f0d2a94d230465eb19ff6860bbfb01f34f8e957eb09a3d