pyrobaculum_medium

CultureMech:005172 archaea DEFINED LIQUID
Original name: PYROBACULUM MEDIUM

Overview

External ontology
komodo.medium:390 (source link unavailable) — PYROBACULUM MEDIUM
Applications
  • Microbial cultivation
Synonyms
  • {'name': 'for_dsm_13380', 'source': 'KOMODO', 'source_id': 'komodo.medium:390.3', 'original_category': 'bacterial'}
  • {'name': 'for_dsm_13514', 'source': 'KOMODO', 'source_id': 'komodo.medium:390.4', 'original_category': 'bacterial'}
  • {'name': 'for_dsm_4184', 'source': 'KOMODO', 'source_id': 'komodo.medium:390.1', 'original_category': 'bacterial'}
  • {'name': 'for_dsm_4185', 'source': 'KOMODO', 'source_id': 'komodo.medium:390.2', 'original_category': 'bacterial'}
pH
6.0
Notes
Source: KOMODO ModelSEED | ID: 390 | DSMZ Medium: 390 (mediadive.medium:390) | Aerobic: Yes

Composition

flowchart LR
    CultureMech_005172["pyrobaculum_medium"]
    ing0__NH4_2SO4["(NH4)2SO4"]
    CultureMech_005172 --> ing0__NH4_2SO4
    CHEBI_62946["CHEBI:62946"]
    ing0__NH4_2SO4 -.-> CHEBI_62946
    ing1_KH2PO4["KH2PO4"]
    CultureMech_005172 --> ing1_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing1_KH2PO4 -.-> CHEBI_63036
    ing2_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_005172 --> ing2_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing2_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing3_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_005172 --> ing3_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing3_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing4_FeCl3_x_6_H2O["FeCl3 x 6 H2O"]
    CultureMech_005172 --> ing4_FeCl3_x_6_H2O
    CHEBI_86254["CHEBI:86254"]
    ing4_FeCl3_x_6_H2O -.-> CHEBI_86254
    ing5_Sodium_resazurin["Sodium resazurin"]
    CultureMech_005172 --> ing5_Sodium_resazurin
    CHEBI_8806["CHEBI:8806"]
    ing5_Sodium_resazurin -.-> CHEBI_8806
    ing6_Trypticase_peptone["Trypticase peptone"]
    CultureMech_005172 --> ing6_Trypticase_peptone
    ing7_Yeast_extract["Yeast extract"]
    CultureMech_005172 --> ing7_Yeast_extract
    ing8_Na2S2O3_x_5_H2O["Na2S2O3 x 5 H2O"]
    CultureMech_005172 --> ing8_Na2S2O3_x_5_H2O
    CHEBI_32150["CHEBI:32150"]
    ing8_Na2S2O3_x_5_H2O -.-> CHEBI_32150
    ing9_Na2S_x_9_H2O["Na2S x 9 H2O"]
    CultureMech_005172 --> ing9_Na2S_x_9_H2O
    CHEBI_76209["CHEBI:76209"]
    ing9_Na2S_x_9_H2O -.-> CHEBI_76209
    ing10_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_005172 --> ing10_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing10_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing11_Na2B4O7_x_10_H2O["Na2B4O7 x 10 H2O"]
    CultureMech_005172 --> ing11_Na2B4O7_x_10_H2O
    CHEBI_131366["CHEBI:131366"]
    ing11_Na2B4O7_x_10_H2O -.-> CHEBI_131366
    ing12_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
    CultureMech_005172 --> ing12_ZnSO4_x_7_H2O
    CHEBI_32312["CHEBI:32312"]
    ing12_ZnSO4_x_7_H2O -.-> CHEBI_32312
    ing13_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
    CultureMech_005172 --> ing13_CuCl2_x_2_H2O
    CHEBI_86318["CHEBI:86318"]
    ing13_CuCl2_x_2_H2O -.-> CHEBI_86318
    ing14_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_005172 --> ing14_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing14_Na2MoO4_x_2_H2O -.-> CHEBI_75213
    ing15_VOSO4_x_2_H2O["VOSO4 x 2 H2O"]
    CultureMech_005172 --> ing15_VOSO4_x_2_H2O
    CHEBI_87009["CHEBI:87009"]
    ing15_VOSO4_x_2_H2O -.-> CHEBI_87009
    ing16_CoSO4_x_7_H2O["CoSO4 x 7 H2O"]
    CultureMech_005172 --> ing16_CoSO4_x_7_H2O
    CHEBI_91244["CHEBI:91244"]
    ing16_CoSO4_x_7_H2O -.-> CHEBI_91244

Ingredients (17)

# Ingredient Concentration Ontology Notes
1 (NH4)2SO4
2H4N.O4S 132.141 g/mol
1.28713 G_PER_L CHEBI:62946
ammonium sulfate
2 KH2PO4
H2O4P.K 136.084 g/mol
0.277228 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
3 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
0.247525 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
4 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
0.0693069 G_PER_L CHEBI:86158
calcium chloride dihydrate
5 FeCl3 x 6 H2O
Cl3Fe.6H2O 270.294 g/mol
0.019802 G_PER_L CHEBI:86254
iron trichloride hexahydrate
6 Sodium resazurin
C12H7NO4 229.191 g/mol
0.00049505 G_PER_L CHEBI:8806
Resazurin
7 Trypticase peptone 0.49505 G_PER_L
8 Yeast extract 0.19802 G_PER_L
9 Na2S2O3 x 5 H2O
5H2O.2Na.O3S2 248.186 g/mol
1.9802 G_PER_L CHEBI:32150
sodium thiosulfate pentahydrate
10 Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
0.49505 G_PER_L CHEBI:76209
sodium sulfide nonahydrate
11 MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
0.18 G_PER_L CHEBI:86368
manganese(II) chloride tetrahydrate
12 Na2B4O7 x 10 H2O
10H2O.H4B4O9.2Na 417.401 g/mol
0.45 G_PER_L CHEBI:131366
disodium tetraborate decahydrate
13 ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
0.022 G_PER_L CHEBI:32312
zinc sulfate heptahydrate
14 CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
0.005 G_PER_L CHEBI:86318
copper(II) chloride dihydrate
15 Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
0.003 G_PER_L CHEBI:75213
sodium molybdate dihydrate
16 VOSO4 x 2 H2O
2H2O.O4S.OV 199.036 g/mol
0.003 G_PER_L CHEBI:87009
vanadyl sulfate dihydrate
17 CoSO4 x 7 H2O
Co.7H2O.O4S 281.101 g/mol
0.001 G_PER_L CHEBI:91244
cobalt(2+) sulfate heptahydrate

Target organisms

No target organisms are recorded.

Provenance

Merged from 6 source records.

TimestampCuratorActionNotes
2026-01-27T01:15:02.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 390
2026-02-03T11:19:11.419777 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 390
2026-03-13T06:19:30.794589Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:005172
2026-03-17T06:30:31.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:46.598600+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "PYROBACULUM MEDIUM" to "pyrobaculum_medium" for consistent matching
2026-06-05T07:40:22.955404+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 13 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:44.766346+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:04:23.203001+00:00 recipe-merger Merged 6 duplicate recipes into canonical record Sources: KOMODO_390_PYROBACULUM_MEDIUM, pyrobaculum_medium, for_dsm_13380, for_dsm_13514, for_dsm_4184, for_dsm_4185
2026-08-06T03:04:23.203073+00:00 merge_recipes.py MERGED_RECIPES merged 6 source recipe(s) on fingerprint 138abba6e54d6729367ec43083a35cb9195787a3b07425f4e56369e360344a99