mineral_medium_with_pyrrolic_acid

CultureMech:005482 bacterial DEFINED LIQUID
Original name: MINERAL MEDIUM WITH PYRROLIC ACID

Overview

External ontology
komodo.medium:461b (source link unavailable) — MINERAL MEDIUM WITH PYRROLIC ACID
Applications
  • Microbial cultivation
Synonyms
  • {'name': 'mineral_medium_nagel_and_andreesen', 'source': 'KOMODO', 'source_id': 'komodo.medium:461', 'original_category': 'bacterial'}
  • {'name': 'mineral_medium_with_quinoline', 'source': 'KOMODO', 'source_id': 'komodo.medium:461a', 'original_category': 'bacterial'}
  • {'name': 'mineral_medium_with_o_nitrophenol', 'source': 'KOMODO', 'source_id': 'komodo.medium:461c', 'original_category': 'bacterial'}
  • {'name': 'medium_461_modified_for_dsm_11853', 'source': 'KOMODO', 'source_id': 'komodo.medium:461_11853', 'original_category': 'bacterial'}
  • {'name': 'medium_461_modified_for_dsm_11853_replace_2_4_dichlorophenol_with_2_6_dichlorophenol', 'source': 'KOMODO', 'source_id': 'komodo.medium:461_11853_replace_2,4-dichlorophenol_with_2,6-dichlorophenol', 'original_category': 'bacterial'}
  • {'name': 'medium_461_modified_for_dsm_13477', 'source': 'KOMODO', 'source_id': 'komodo.medium:461_13477', 'original_category': 'bacterial'}
  • {'name': 'medium_461_modified_for_dsm_14262', 'source': 'KOMODO', 'source_id': 'komodo.medium:461_14262', 'original_category': 'bacterial'}
  • {'name': 'medium_461_modified_for_dsm_16637', 'source': 'KOMODO', 'source_id': 'komodo.medium:461_16637', 'original_category': 'bacterial'}
  • {'name': 'medium_461_modified_for_dsm_6284', 'source': 'KOMODO', 'source_id': 'komodo.medium:461_6284', 'original_category': 'bacterial'}
  • {'name': 'medium_461_modified_for_dsm_6384', 'source': 'KOMODO', 'source_id': 'komodo.medium:461_6384', 'original_category': 'bacterial'}
  • {'name': 'medium_461_modified_for_dsm_6387', 'source': 'KOMODO', 'source_id': 'komodo.medium:461_6387', 'original_category': 'bacterial'}
  • {'name': 'medium_461_modified_for_dsm_6388', 'source': 'KOMODO', 'source_id': 'komodo.medium:461_6388', 'original_category': 'bacterial'}
  • {'name': 'medium_461_modified_for_dsm_6392', 'source': 'KOMODO', 'source_id': 'komodo.medium:461_6392', 'original_category': 'bacterial'}
  • {'name': 'medium_461_modified_for_dsm_7215', 'source': 'KOMODO', 'source_id': 'komodo.medium:461_7215', 'original_category': 'bacterial'}
  • {'name': 'medium_461_modified_for_dsm_7216', 'source': 'KOMODO', 'source_id': 'komodo.medium:461_7216', 'original_category': 'bacterial'}
  • {'name': 'medium_461_modified_for_dsm_9506', 'source': 'KOMODO', 'source_id': 'komodo.medium:461_9506', 'original_category': 'bacterial'}
pH
7.2
High-metal flag
True
Notes
Source: KOMODO ModelSEED | ID: 461b | DSMZ Medium: 461b (mediadive.medium:461b) | Aerobic: No

Composition

flowchart LR
    CultureMech_005482["mineral_medium_with_pyrrolic_acid"]
    ing0_Na2HPO4_x_2_H2O["Na2HPO4 x 2 H2O"]
    CultureMech_005482 --> ing0_Na2HPO4_x_2_H2O
    CHEBI_91258["CHEBI:91258"]
    ing0_Na2HPO4_x_2_H2O -.-> CHEBI_91258
    ing1_KH2PO4["KH2PO4"]
    CultureMech_005482 --> ing1_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing1_KH2PO4 -.-> CHEBI_63036
    ing2_CaCl2["CaCl2"]
    CultureMech_005482 --> ing2_CaCl2
    CHEBI_3312["CHEBI:3312"]
    ing2_CaCl2 -.-> CHEBI_3312
    ing3_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_005482 --> ing3_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing3_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing4_MnSO4["MnSO4"]
    CultureMech_005482 --> ing4_MnSO4
    CHEBI_86360["CHEBI:86360"]
    ing4_MnSO4 -.-> CHEBI_86360
    ing5_NH4Cl["NH4Cl"]
    CultureMech_005482 --> ing5_NH4Cl
    CHEBI_31206["CHEBI:31206"]
    ing5_NH4Cl -.-> CHEBI_31206
    ing6_NaCl["NaCl"]
    CultureMech_005482 --> ing6_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing6_NaCl -.-> CHEBI_26710
    ing7_Pyrrole_2_carboxylic_acid["Pyrrole-2-carboxylic acid"]
    CultureMech_005482 --> ing7_Pyrrole_2_carboxylic_acid
    ing8_Potassium_phosphate_buffer["Potassium phosphate buffer"]
    CultureMech_005482 --> ing8_Potassium_phosphate_buffer

Ingredients (9)

# Ingredient Concentration Ontology Notes
1 Na2HPO4 x 2 H2O
2H2O.HO4P.2Na 177.988 g/mol
1.44135 G_PER_L CHEBI:91258
disodium hydrogenphosphate dihydrate
2 KH2PO4
H2O4P.K 136.084 g/mol
0.248509 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
3 CaCl2
Ca.2Cl 110.984 g/mol
0.00994036 G_PER_L CHEBI:3312
calcium dichloride
4 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
0.497018 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
5 MnSO4
Mn.O4S 151.001 g/mol
0.00994036 G_PER_L CHEBI:86360
manganese(II) sulfate
6 NH4Cl
Cl.H4N 53.492 g/mol
0.298211 G_PER_L CHEBI:31206
ammonium chloride
7 NaCl
Cl.Na 58.443 g/mol
0.0497018 G_PER_L CHEBI:26710
sodium chloride
8 Pyrrole-2-carboxylic acid 1111 G_PER_L
9 Potassium phosphate buffer 1000 G_PER_L

Target organisms

No target organisms are recorded.

Provenance

Merged from 18 source records.

TimestampCuratorActionNotes
2026-01-27T01:15:02.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 461b
2026-02-03T11:19:07.251301 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 461
2026-03-13T06:19:33.223614Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:005482
2026-03-17T06:30:18.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:49.306382+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "MINERAL MEDIUM WITH PYRROLIC ACID" to "mineral_medium_with_pyrrolic_acid" for consistent matching
2026-06-05T07:40:23.535998+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 7 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:44.961984+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 3 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:04:51.750330+00:00 recipe-merger Merged 18 duplicate recipes into canonical record Sources: KOMODO_461_MINERAL_MEDIUM_NAGEL_AND_ANDREESEN, KOMODO_461a_MINERAL_MEDIUM_WITH_QUINOLINE, KOMODO_461b_MINERAL_MEDIUM_WITH_PYRROLIC_ACID, KOMODO_461c_MINERAL_MEDIUM_WITH_O-NITROPHENOL, medium_461_modified_for_dsm_11853, medium_461_modified_for_dsm_11853_replace_2_4_dichlorophenol_with_2_6_dichlorophenol, medium_461_modified_for_dsm_13477, medium_461_modified_for_dsm_14262, medium_461_modified_for_dsm_16637, medium_461_modified_for_dsm_6284, medium_461_modified_for_dsm_6384, medium_461_modified_for_dsm_6387, medium_461_modified_for_dsm_6388, medium_461_modified_for_dsm_6392, medium_461_modified_for_dsm_7215, medium_461_modified_for_dsm_7216, medium_461_modified_for_dsm_9506, mineral_medium_with_pyrrolic_acid
2026-08-06T03:04:51.750441+00:00 merge_recipes.py MERGED_RECIPES merged 18 source recipe(s) on fingerprint 2ae864d108735fda46267d172cc8ed3d4f16e3ff151352c8d647148a8a7c5967