mineral_medium_with_2_hydroxybiphenyl

CultureMech:005567 bacterial COMPLEX SOLID_AGAR
Original name: MINERAL MEDIUM WITH 2-HYDROXYBIPHENYL

Overview

External ontology
komodo.medium:465a (source link unavailable) — MINERAL MEDIUM WITH 2-HYDROXYBIPHENYL
Applications
  • Microbial cultivation
Synonyms
  • {'name': 'mineral_medium_ph_7_25', 'source': 'KOMODO', 'source_id': 'komodo.medium:465', 'original_category': 'bacterial'}
  • {'name': 'mineral_medium_with_pcp', 'source': 'KOMODO', 'source_id': 'komodo.medium:465b', 'original_category': 'bacterial'}
  • {'name': 'mineral_medium_with_dichloromethane', 'source': 'KOMODO', 'source_id': 'komodo.medium:465c', 'original_category': 'bacterial'}
  • {'name': 'mineral_medium_with_benzylcyanide_as_nitrogen_source', 'source': 'KOMODO', 'source_id': 'komodo.medium:465d', 'original_category': 'bacterial'}
  • {'name': 'mineral_medium_with_sulfobenzoic_acid', 'source': 'KOMODO', 'source_id': 'komodo.medium:465e', 'original_category': 'bacterial'}
  • {'name': 'mineral_medium_with_3_aminophenol', 'source': 'KOMODO', 'source_id': 'komodo.medium:465f', 'original_category': 'bacterial'}
  • {'name': 'mineral_medium_with_cyanuric_acid_as_nitrogen_source', 'source': 'KOMODO', 'source_id': 'komodo.medium:465g', 'original_category': 'bacterial'}
  • {'name': 'mineralmedium_with_6_methylnicotinate', 'source': 'KOMODO', 'source_id': 'komodo.medium:465h', 'original_category': 'bacterial'}
  • {'name': 'mineral_medium_with_atrazin', 'source': 'KOMODO', 'source_id': 'komodo.medium:465i', 'original_category': 'bacterial'}
  • {'name': 'for_dsm_6813', 'source': 'KOMODO', 'source_id': 'komodo.medium:465c.1', 'original_category': 'bacterial'}
  • {'name': 'for_dsm_9675_and_dsm_9685', 'source': 'KOMODO', 'source_id': 'komodo.medium:465d.1', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_10063', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_10063', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_10064', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_10064', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_10065', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_10065', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_10066', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_10066', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_10698', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_10698', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_10699', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_10699', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_10700', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_10700', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_11098', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_11098', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_11199', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_11199', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_11414', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_11414', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_11437', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_11437', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_12578', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_12578', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_12579', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_12579', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_12584', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_12584', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_12585', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_12585', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_12678', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_12678', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_12775', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_12775', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_12877', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_12877', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_13640', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_13640', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_13640_replace_taurine_with_ethanedisulfonate', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_13640_replace_taurine_with_ethanedisulfonate', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_14773', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_14773', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_16812', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_16812', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_16843', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_16843', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_16845', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_16845', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_16851', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_16851', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_16962', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_16962', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_16963', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_16963', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_16964', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_16964', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_17507', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_17507', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_17540', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_17540', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_17854', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_17854', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_18361', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_18361', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_19529', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_19529', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_19550', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_19550', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_6383', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_6383', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_6428', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_6428', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_6428_replace_phenol_with_2_4_6_trichlorophenol', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_6428_replace_phenol_with_2,4,6-trichlorophenol', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_6431', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_6431', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_6432', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_6432', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_6434', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_6434', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_6577', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_6577', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_6708', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_6708', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_6985', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_6985', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_6986', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_6986', 'original_category': 'bacterial'}
  • {'name': 'medium_465_modified_for_dsm_7005', 'source': 'KOMODO', 'source_id': 'komodo.medium:465_7005', 'original_category': 'bacterial'}
  • {'name': 'medium_465b_modified_for_dsm_6824', 'source': 'KOMODO', 'source_id': 'komodo.medium:465b_6824', 'original_category': 'bacterial'}
Notes
Source: KOMODO ModelSEED | ID: 465a | DSMZ Medium: 465a (mediadive.medium:465a) | Aerobic: No Commercial Product: Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) Supplier: Multiple suppliers (BD, Sigma, Neogen) Catalog: Multiple (22092 Sigma, 211825 BD) Source: https://en.wikipedia.org/wiki/Tryptic_soy_broth Accessed: 2026-03-28 Constituent composition researched from product specification.

Composition

flowchart LR
    CultureMech_005567["mineral_medium_with_2_hydroxybiphenyl"]
    ing0__1_1__Biphenyl__2_ol["[1,1′-Biphenyl]-2-ol"]
    CultureMech_005567 --> ing0__1_1__Biphenyl__2_ol
    ing1_Na2HPO4_x_2_H2O["Na2HPO4 x 2 H2O"]
    CultureMech_005567 --> ing1_Na2HPO4_x_2_H2O
    CHEBI_91258["CHEBI:91258"]
    ing1_Na2HPO4_x_2_H2O -.-> CHEBI_91258
    ing2_KH2PO4["KH2PO4"]
    CultureMech_005567 --> ing2_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing2_KH2PO4 -.-> CHEBI_63036
    ing3__NH4_2SO4["(NH4)2SO4"]
    CultureMech_005567 --> ing3__NH4_2SO4
    CHEBI_62946["CHEBI:62946"]
    ing3__NH4_2SO4 -.-> CHEBI_62946
    ing4_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
    CultureMech_005567 --> ing4_MgCl2_x_6_H2O
    CHEBI_86345["CHEBI:86345"]
    ing4_MgCl2_x_6_H2O -.-> CHEBI_86345
    ing5_Ca_NO3_2_x_4_H2O["Ca(NO3)2 x 4 H2O"]
    CultureMech_005567 --> ing5_Ca_NO3_2_x_4_H2O
    CHEBI_86159["CHEBI:86159"]
    ing5_Ca_NO3_2_x_4_H2O -.-> CHEBI_86159
    ing6_Na2_EDTA["Na2-EDTA"]
    CultureMech_005567 --> ing6_Na2_EDTA
    CHEBI_64734["CHEBI:64734"]
    ing6_Na2_EDTA -.-> CHEBI_64734
    ing7_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
    CultureMech_005567 --> ing7_FeSO4_x_7_H2O
    CHEBI_75836["CHEBI:75836"]
    ing7_FeSO4_x_7_H2O -.-> CHEBI_75836
    ing8_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
    CultureMech_005567 --> ing8_ZnSO4_x_7_H2O
    CHEBI_32312["CHEBI:32312"]
    ing8_ZnSO4_x_7_H2O -.-> CHEBI_32312
    ing9_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
    CultureMech_005567 --> ing9_MnCl2_x_4_H2O
    CHEBI_86368["CHEBI:86368"]
    ing9_MnCl2_x_4_H2O -.-> CHEBI_86368
    ing10_H3BO3["H3BO3"]
    CultureMech_005567 --> ing10_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing10_H3BO3 -.-> CHEBI_33118
    ing11_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
    CultureMech_005567 --> ing11_CoCl2_x_6_H2O
    CHEBI_53503["CHEBI:53503"]
    ing11_CoCl2_x_6_H2O -.-> CHEBI_53503
    ing12_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
    CultureMech_005567 --> ing12_CuCl2_x_2_H2O
    CHEBI_86318["CHEBI:86318"]
    ing12_CuCl2_x_2_H2O -.-> CHEBI_86318
    ing13_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
    CultureMech_005567 --> ing13_NiCl2_x_6_H2O
    CHEBI_34887["CHEBI:34887"]
    ing13_NiCl2_x_6_H2O -.-> CHEBI_34887
    ing14_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
    CultureMech_005567 --> ing14_Na2MoO4_x_2_H2O
    CHEBI_75213["CHEBI:75213"]
    ing14_Na2MoO4_x_2_H2O -.-> CHEBI_75213
    ing15_Peptone["Peptone"]
    CultureMech_005567 --> ing15_Peptone
    ing16_Meat_extract["Meat extract"]
    CultureMech_005567 --> ing16_Meat_extract
    ing17_Agar["Agar"]
    CultureMech_005567 --> ing17_Agar
    CHEBI_2509["CHEBI:2509"]
    ing17_Agar -.-> CHEBI_2509
    ing18_Casein_peptone["Casein peptone"]
    CultureMech_005567 --> ing18_Casein_peptone
    ing19_Soy_peptone["Soy peptone"]
    CultureMech_005567 --> ing19_Soy_peptone
    ing20_NaCl["NaCl"]
    CultureMech_005567 --> ing20_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing20_NaCl -.-> CHEBI_26710
    ing21_Pancreatic_digest_of_casein["Pancreatic digest of casein"]
    CultureMech_005567 --> ing21_Pancreatic_digest_of_casein
    ing22_Peptic_digest_of_soybean_meal["Peptic digest of soybean meal"]
    CultureMech_005567 --> ing22_Peptic_digest_of_soybean_meal
    ing23_Glucose["Glucose"]
    CultureMech_005567 --> ing23_Glucose
    CHEBI_17234["CHEBI:17234"]
    ing23_Glucose -.-> CHEBI_17234
    ing24_Sodium_chloride["Sodium chloride"]
    CultureMech_005567 --> ing24_Sodium_chloride
    ing24_Sodium_chloride -.-> CHEBI_26710
    ing25_Dipotassium_phosphate["Dipotassium phosphate"]
    CultureMech_005567 --> ing25_Dipotassium_phosphate
    CHEBI_131527["CHEBI:131527"]
    ing25_Dipotassium_phosphate -.-> CHEBI_131527
    ing26_Agar["Agar"]
    CultureMech_005567 --> ing26_Agar
    ing26_Agar -.-> CHEBI_2509
    ing27_Yeast_extract["Yeast extract"]
    CultureMech_005567 --> ing27_Yeast_extract
    ing28_Proteose_peptone["Proteose peptone"]
    CultureMech_005567 --> ing28_Proteose_peptone
    ing29_Casamino_acids["Casamino acids"]
    CultureMech_005567 --> ing29_Casamino_acids
    CultureMech_005567 --> more["...5 more"]

Ingredients (35)

# Ingredient Concentration Ontology Notes
1 [1,1′-Biphenyl]-2-ol 0.5 G_PER_L
2 Na2HPO4 x 2 H2O
2H2O.HO4P.2Na 177.988 g/mol
3.5 G_PER_L CHEBI:91258
disodium hydrogenphosphate dihydrate
3 KH2PO4
H2O4P.K 136.084 g/mol
1 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
4 (NH4)2SO4
2H4N.O4S 132.141 g/mol
0.5 G_PER_L CHEBI:62946
ammonium sulfate
5 MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
0.1 G_PER_L CHEBI:86345
magnesium dichloride hexahydrate
6 Ca(NO3)2 x 4 H2O
Ca.4H2O.2NO3 236.146 g/mol
0.05 G_PER_L CHEBI:86159
calcium nitrate tetrahydrate
7 Na2-EDTA
C10H14N2O8.2Na 336.208 g/mol
0.5 G_PER_L CHEBI:64734
EDTA disodium salt (anhydrous)
8 FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
0.2 G_PER_L CHEBI:75836
iron(2+) sulfate heptahydrate
9 ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
0.1 G_PER_L CHEBI:32312
zinc sulfate heptahydrate
10 MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
0.03 G_PER_L CHEBI:86368
manganese(II) chloride tetrahydrate
11 H3BO3
H3BO3 61.833 g/mol
0.3 G_PER_L CHEBI:33118
boric acid
12 CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
0.2 G_PER_L CHEBI:53503
cobalt chloride hexahydrate
13 CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
0.01 G_PER_L CHEBI:86318
copper(II) chloride dihydrate
14 NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
0.02 G_PER_L CHEBI:34887
nickel dichloride
15 Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
0.03 G_PER_L CHEBI:75213
sodium molybdate dihydrate
16 Peptone 5 G_PER_L
17 Meat extract 3 G_PER_L
18 Agar 65.0 G_PER_L CHEBI:2509
agar
 (for solid medium) [Merged 4 duplicates: 15.0, 15.0, 20.0, 15.0]
19 Casein peptone 15 G_PER_L
20 Soy peptone 5 G_PER_L
21 NaCl
Cl.Na 58.443 g/mol
5 G_PER_L CHEBI:26710
sodium chloride
22 Pancreatic digest of casein
Multiple suppliers (BD, Sigma, Neogen) Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) Multiple (22092 Sigma, 211825 BD)
17.0 G_PER_L MICRO:0000182 (source link unavailable)
tryptone
 Pancreatic enzymatic digest of casein providing amino acids and peptides; Constituent of Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) commercial product
23 Peptic digest of soybean meal
Multiple suppliers (BD, Sigma, Neogen) Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) Multiple (22092 Sigma, 211825 BD)
3.0 G_PER_L FOODON:03315720
vegetable protein, hydrolyzed
 Peptic digest of soybean meal providing additional peptides and carbohydrates; Constituent of Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) commercial product
24 Glucose
C6H12O6 180.156 g/mol
Multiple suppliers (BD, Sigma, Neogen) Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) Multiple (22092 Sigma, 211825 BD)
2.5 G_PER_L CHEBI:17234
glucose
 Carbon/energy source; Constituent of Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) commercial product
25 Sodium chloride
Cl.Na 58.443 g/mol
Multiple suppliers (BD, Sigma, Neogen) Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) Multiple (22092 Sigma, 211825 BD)
5.0 G_PER_L CHEBI:26710
sodium chloride
 Maintains osmotic equilibrium; Constituent of Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) commercial product
26 Dipotassium phosphate
HO4P.2K 174.174 g/mol
Multiple suppliers (BD, Sigma, Neogen) Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) Multiple (22092 Sigma, 211825 BD)
2.5 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
 pH buffer; Constituent of Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) commercial product
27 Agar
Multiple suppliers (BD, Sigma, Neogen) Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) Multiple (22092 Sigma, 211825 BD)
15.0 G_PER_L CHEBI:2509
agar
 Solidifying agent (for TSA only, not in TSB); Constituent of Tryptic Soy Broth (TSB) / Tryptic Soy Agar (TSA) commercial product
28 Yeast extract 0.5 G_PER_L
29 Proteose peptone 0.5 G_PER_L
30 Casamino acids 0.5 G_PER_L
31 Glucose
C6H12O6 180.156 g/mol
0.5 G_PER_L CHEBI:17234
glucose
32 Starch 0.5 G_PER_L CHEBI:28017
starch
33 Na-pyruvate
C3H3O3.Na 110.044 g/mol
0.3 G_PER_L CHEBI:50144
sodium pyruvate
34 K2HPO4
HO4P.2K 174.174 g/mol
0.3 G_PER_L CHEBI:131527
dipotassium hydrogen phosphate
35 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
0.05 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate

Target organisms

No target organisms are recorded.

Provenance

Merged from 59 source records.

TimestampCuratorActionNotes
2026-01-27T01:15:02.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 465a
2026-02-03T11:18:56.461224 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 465
2026-03-13T03:08:43.182857Z data-quality-cleanup-v1.0 Data quality fixes Merged 3 duplicate ingredient(s)
2026-03-13T06:19:34.135369Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:005567
2026-03-17T06:29:45.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:50.327256+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "MINERAL MEDIUM WITH 2-HYDROXYBIPHENYL" to "mineral_medium_with_2_hydroxybiphenyl" for consistent matching
2026-06-05T07:40:23.683618+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 22 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-08T23:19:28.079551+00:00 chebi-regrounding-v1.0 Corrected CHEBI ingredient grounding (shared-id regrounding audit, G21/G22/G24) Part of the shared-id CHEBI regrounding audit (G21/G22/G24): one or more ingredient groundings on this record that had been collapsed onto a chemically non-specific or shared CHEBI id were re-grounded to the correct chemically-specific term, verified against OAK chebi.db rdfs:label. See reports/chebi_grounding_audit.md.
2026-06-10T07:46:45.010344+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 5 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:04:53.017668+00:00 recipe-merger Merged 59 duplicate recipes into canonical record Sources: KOMODO_465_MINERAL_MEDIUM_PH_7.25, KOMODO_465a_MINERAL_MEDIUM_WITH_2-HYDROXYBIPHENYL, KOMODO_465b_MINERAL_MEDIUM_WITH_PCP, KOMODO_465c_MINERAL_MEDIUM_WITH_DICHLOROMETHANE, KOMODO_465d_MINERAL_MEDIUM_WITH_BENZYLCYANIDE_AS_NITROGEN_SOURCE, KOMODO_465e_MINERAL_MEDIUM_WITH_SULFOBENZOIC_ACID, KOMODO_465f_MINERAL_MEDIUM_WITH_3-AMINOPHENOL, KOMODO_465g_MINERAL_MEDIUM_WITH_CYANURIC_ACID_AS_NITROGEN_SOURCE, KOMODO_465h_MINERALMEDIUM_WITH_6-METHYLNICOTINATE, KOMODO_465i_MINERAL_MEDIUM_WITH_ATRAZIN, for_dsm_6813, for_dsm_9675_and_dsm_9685, medium_465_modified_for_dsm_10063, medium_465_modified_for_dsm_10064, medium_465_modified_for_dsm_10065, medium_465_modified_for_dsm_10066, medium_465_modified_for_dsm_10698, medium_465_modified_for_dsm_10699, medium_465_modified_for_dsm_10700, medium_465_modified_for_dsm_11098, medium_465_modified_for_dsm_11199, medium_465_modified_for_dsm_11414, medium_465_modified_for_dsm_11437, medium_465_modified_for_dsm_12578, medium_465_modified_for_dsm_12579, medium_465_modified_for_dsm_12584, medium_465_modified_for_dsm_12585, medium_465_modified_for_dsm_12678, medium_465_modified_for_dsm_12775, medium_465_modified_for_dsm_12877, medium_465_modified_for_dsm_13640, medium_465_modified_for_dsm_13640_replace_taurine_with_ethanedisulfonate, medium_465_modified_for_dsm_14773, medium_465_modified_for_dsm_16812, medium_465_modified_for_dsm_16843, medium_465_modified_for_dsm_16845, medium_465_modified_for_dsm_16851, medium_465_modified_for_dsm_16962, medium_465_modified_for_dsm_16963, medium_465_modified_for_dsm_16964, medium_465_modified_for_dsm_17507, medium_465_modified_for_dsm_17540, medium_465_modified_for_dsm_17854, medium_465_modified_for_dsm_18361, medium_465_modified_for_dsm_19529, medium_465_modified_for_dsm_19550, medium_465_modified_for_dsm_6383, medium_465_modified_for_dsm_6428, medium_465_modified_for_dsm_6428_replace_phenol_with_2_4_6_trichlorophenol, medium_465_modified_for_dsm_6431, medium_465_modified_for_dsm_6432, medium_465_modified_for_dsm_6434, medium_465_modified_for_dsm_6577, medium_465_modified_for_dsm_6708, medium_465_modified_for_dsm_6985, medium_465_modified_for_dsm_6986, medium_465_modified_for_dsm_7005, medium_465b_modified_for_dsm_6824, mineral_medium_with_2_hydroxybiphenyl
2026-08-06T03:04:53.018507+00:00 merge_recipes.py MERGED_RECIPES merged 59 source recipe(s) on fingerprint 374177bbec2b902cc0e58960bdea2b89c46e3cde021cde8889df3db39f28be4e