Overview
- External ontology
- komodo.medium:538 (source link unavailable) — HERBASPIRILLUM medium
- Applications
-
- Microbial cultivation
- pH
- 7.0
- Notes
- Source: KOMODO ModelSEED | ID: 538 | DSMZ Medium: 538 (mediadive.medium:538) | Aerobic: No
Composition
flowchart LR
CultureMech_005964["herbaspirillum_medium"]
ing0_KH2PO4["KH2PO4"]
CultureMech_005964 --> ing0_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing0_KH2PO4 -.-> CHEBI_63036
ing1_K2HPO4["K2HPO4"]
CultureMech_005964 --> ing1_K2HPO4
CHEBI_131527["CHEBI:131527"]
ing1_K2HPO4 -.-> CHEBI_131527
ing2_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_005964 --> ing2_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing2_MgSO4_x_7_H2O -.-> CHEBI_31795
ing3_NaCl["NaCl"]
CultureMech_005964 --> ing3_NaCl
CHEBI_26710["CHEBI:26710"]
ing3_NaCl -.-> CHEBI_26710
ing4_CaCl2["CaCl2"]
CultureMech_005964 --> ing4_CaCl2
CHEBI_3312["CHEBI:3312"]
ing4_CaCl2 -.-> CHEBI_3312
ing5_FeCl2_x_6_H2O["FeCl2 x 6 H2O"]
CultureMech_005964 --> ing5_FeCl2_x_6_H2O
CHEBI_30812["CHEBI:30812"]
ing5_FeCl2_x_6_H2O -.-> CHEBI_30812
ing6_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_005964 --> ing6_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing6_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing7_Yeast_extract["Yeast extract"]
CultureMech_005964 --> ing7_Yeast_extract
ing8_Agar["Agar"]
CultureMech_005964 --> ing8_Agar
CHEBI_2509["CHEBI:2509"]
ing8_Agar -.-> CHEBI_2509
ing9_Na_malate["Na-malate"]
CultureMech_005964 --> ing9_Na_malate
CHEBI_91260["CHEBI:91260"]
ing9_Na_malate -.-> CHEBI_91260
Ingredients (10)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.4 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 2 |
K2HPO4
HO4P.2K 174.174 g/mol
|
0.1 G_PER_L |
CHEBI:131527
dipotassium hydrogen phosphate
|
|
| 3 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.2 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 4 |
NaCl
Cl.Na 58.443 g/mol
|
0.1 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 5 |
CaCl2
Ca.2Cl 110.984 g/mol
|
0.02 G_PER_L |
CHEBI:3312
calcium dichloride
|
|
| 6 |
FeCl2 x 6 H2O
Cl2Fe 126.751 g/mol
|
0.01 G_PER_L |
CHEBI:30812
iron dichloride
|
|
| 7 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.002 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
|
| 8 | Yeast extract | 0.05 G_PER_L | ||
| 9 | Agar | 15 G_PER_L |
CHEBI:2509
agar
|
|
| 10 | Na-malate | 100 G_PER_L |
CHEBI:91260
disodium malate
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_538_HERBASPIRILLUM_medium (CultureMech:005964)
- herbaspirillum_medium (CultureMech:001670)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 538 |
| 2026-02-03T11:19:00.618854 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 538 |
| 2026-03-13T06:19:37.350891Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:005964 |
| 2026-03-17T06:29:57.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:54.101175+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "HERBASPIRILLUM medium" to "herbaspirillum_medium" for consistent matching |
| 2026-06-05T07:40:24.476516+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 9 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:45.256263+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:04:55.245664+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_538_HERBASPIRILLUM_medium, herbaspirillum_medium |
| 2026-08-06T03:04:55.245710+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint 1504a5481ea339fd0f6cc588740f25002cff56c5993f930ede09f8aa856746c7 |