Overview
- External ontology
- komodo.medium:569 (source link unavailable) — MEDIUM 125 WITH METHANOL
- Applications
-
- Microbial cultivation
- pH range
- {'min': 4.0, 'max': 5.4}
- Notes
- Source: KOMODO ModelSEED | ID: 569 | DSMZ Medium: 569 (mediadive.medium:569) | Aerobic: No
Composition
flowchart LR
CultureMech_006016["medium_125_with_methanol"]
ing0_Methanol["Methanol"]
CultureMech_006016 --> ing0_Methanol
CHEBI_17790["CHEBI:17790"]
ing0_Methanol -.-> CHEBI_17790
ing1_KNO3["KNO3"]
CultureMech_006016 --> ing1_KNO3
CHEBI_63043["CHEBI:63043"]
ing1_KNO3 -.-> CHEBI_63043
ing2_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_006016 --> ing2_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing2_MgSO4_x_7_H2O -.-> CHEBI_31795
ing3_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_006016 --> ing3_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing3_CaCl2_x_2_H2O -.-> CHEBI_86158
ing4_Na2HPO4["Na2HPO4"]
CultureMech_006016 --> ing4_Na2HPO4
CHEBI_34683["CHEBI:34683"]
ing4_Na2HPO4 -.-> CHEBI_34683
ing5_NaH2PO4["NaH2PO4"]
CultureMech_006016 --> ing5_NaH2PO4
CHEBI_37585["CHEBI:37585"]
ing5_NaH2PO4 -.-> CHEBI_37585
ing6_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_006016 --> ing6_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing6_FeSO4_x_7_H2O -.-> CHEBI_75836
ing7_CuSO4_x_5_H2O["CuSO4 x 5 H2O"]
CultureMech_006016 --> ing7_CuSO4_x_5_H2O
CHEBI_31440["CHEBI:31440"]
ing7_CuSO4_x_5_H2O -.-> CHEBI_31440
ing8_H3BO3["H3BO3"]
CultureMech_006016 --> ing8_H3BO3
CHEBI_33118["CHEBI:33118"]
ing8_H3BO3 -.-> CHEBI_33118
ing9_MnSO4_x_5_H2O["MnSO4 x 5 H2O"]
CultureMech_006016 --> ing9_MnSO4_x_5_H2O
CHEBI_131524["CHEBI:131524"]
ing9_MnSO4_x_5_H2O -.-> CHEBI_131524
ing10_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_006016 --> ing10_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing10_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing11_MoO3["MoO3"]
CultureMech_006016 --> ing11_MoO3
CHEBI_30627["CHEBI:30627"]
ing11_MoO3 -.-> CHEBI_30627
ing12_Agar["Agar"]
CultureMech_006016 --> ing12_Agar
CHEBI_2509["CHEBI:2509"]
ing12_Agar -.-> CHEBI_2509
Ingredients (13)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
Methanol
CH4O 32.042 g/mol
|
7.92 G_PER_L |
CHEBI:17790
methanol
|
|
| 2 |
KNO3
K.NO3 101.102 g/mol
|
1 G_PER_L |
CHEBI:63043
potassium nitrate
|
|
| 3 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
0.2 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 4 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.02 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 5 |
Na2HPO4
HO4P.2Na 141.958 g/mol
|
0.23 G_PER_L |
CHEBI:34683
disodium hydrogenphosphate
|
|
| 6 |
NaH2PO4
H2O4P.Na 119.976 g/mol
|
0.07 G_PER_L |
CHEBI:37585
sodium dihydrogenphosphate
|
|
| 7 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
0.001 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
|
| 8 |
CuSO4 x 5 H2O
Cu.5H2O.O4S 249.684 g/mol
|
5e-06 G_PER_L |
CHEBI:31440
copper(II) sulfate pentahydrate
|
|
| 9 |
H3BO3
H3BO3 61.833 g/mol
|
1e-05 G_PER_L |
CHEBI:33118
boric acid
|
|
| 10 |
MnSO4 x 5 H2O
5H2O.Mn.O4S 241.076 g/mol
|
1e-05 G_PER_L |
CHEBI:131524
manganese(II) sulfate pentahydrate
|
|
| 11 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
7e-05 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
|
| 12 |
MoO3
MoO3 143.937 g/mol
|
1e-05 G_PER_L |
CHEBI:30627
molybdenum trioxide
|
|
| 13 | Agar | 12 G_PER_L |
CHEBI:2509
agar
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_569_MEDIUM_125_WITH_METHANOL (CultureMech:006016)
- medium_125_with_methanol (CultureMech:001698)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 569 |
| 2026-02-03T11:19:02.774219 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 569 |
| 2026-03-13T06:19:37.661658Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:006016 |
| 2026-03-17T06:30:04.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:45:54.472551+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "MEDIUM 125 WITH METHANOL" to "medium_125_with_methanol" for consistent matching |
| 2026-05-20T06:00:52.671639+00:00 | migrate_ph_range.py | MIGRATED_PH_RANGE | ph_range '4.0-5.4' -> {'min': 4.0, 'max': 5.4} |
| 2026-06-05T07:40:24.630643+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 12 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:37:34.271634+00:00 | primary-term-regrounding-v1.0 | Re-grounded wrong primary term id (OAK-verified) | 1 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-06-10T07:46:45.292507+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:04:55.546325+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_569_MEDIUM_125_WITH_METHANOL, medium_125_with_methanol |
| 2026-08-06T03:04:55.546365+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint c4fa6c985bf8972bcd2285e0fc2c7866af02184c3426424af4543007dfc3d93a |