Overview
- External ontology
- komodo.medium:867 (source link unavailable) — RHODOBACTER VELDKAMPII MEDIUM
- Applications
-
- Microbial cultivation
- Notes
- Source: KOMODO ModelSEED | ID: 867 | DSMZ Medium: 867 (mediadive.medium:867) | Aerobic: Yes
Composition
flowchart LR
CultureMech_006697["rhodobacter_veldkampii_medium"]
ing0_Yeast_extract["Yeast extract"]
CultureMech_006697 --> ing0_Yeast_extract
ing1_Na_acetate["Na-acetate"]
CultureMech_006697 --> ing1_Na_acetate
CHEBI_32954["CHEBI:32954"]
ing1_Na_acetate -.-> CHEBI_32954
ing2_Vitamin_B12["Vitamin B12"]
CultureMech_006697 --> ing2_Vitamin_B12
CHEBI_176843["CHEBI:176843"]
ing2_Vitamin_B12 -.-> CHEBI_176843
ing3_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_006697 --> ing3_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing3_CaCl2_x_2_H2O -.-> CHEBI_86158
ing4_Na2S_x_9_H2O["Na2S x 9 H2O"]
CultureMech_006697 --> ing4_Na2S_x_9_H2O
CHEBI_76209["CHEBI:76209"]
ing4_Na2S_x_9_H2O -.-> CHEBI_76209
ing5_NaHCO3["NaHCO3"]
CultureMech_006697 --> ing5_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing5_NaHCO3 -.-> CHEBI_32139
ing6_Resazurin["Resazurin"]
CultureMech_006697 --> ing6_Resazurin
CHEBI_8806["CHEBI:8806"]
ing6_Resazurin -.-> CHEBI_8806
ing7_Ammonium_chloride["Ammonium chloride"]
CultureMech_006697 --> ing7_Ammonium_chloride
CHEBI_31206["CHEBI:31206"]
ing7_Ammonium_chloride -.-> CHEBI_31206
ing8_Ammonium_acetate["Ammonium acetate"]
CultureMech_006697 --> ing8_Ammonium_acetate
CHEBI_62947["CHEBI:62947"]
ing8_Ammonium_acetate -.-> CHEBI_62947
ing9_Pyruvic_acid_sodium_salt["Pyruvic acid sodium salt"]
CultureMech_006697 --> ing9_Pyruvic_acid_sodium_salt
CHEBI_50144["CHEBI:50144"]
ing9_Pyruvic_acid_sodium_salt -.-> CHEBI_50144
ing10_Dextrose["Dextrose"]
CultureMech_006697 --> ing10_Dextrose
CHEBI_17634["CHEBI:17634"]
ing10_Dextrose -.-> CHEBI_17634
ing11_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_006697 --> ing11_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing11_MgSO4_x_7_H2O -.-> CHEBI_31795
ing12_KCl["KCl"]
CultureMech_006697 --> ing12_KCl
CHEBI_32588["CHEBI:32588"]
ing12_KCl -.-> CHEBI_32588
ing13_KH2PO4["KH2PO4"]
CultureMech_006697 --> ing13_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing13_KH2PO4 -.-> CHEBI_63036
ing14_Riboflavin["Riboflavin"]
CultureMech_006697 --> ing14_Riboflavin
CHEBI_17015["CHEBI:17015"]
ing14_Riboflavin -.-> CHEBI_17015
ing15_Thiamine_HCl_x_2_H2O["Thiamine-HCl x 2 H2O"]
CultureMech_006697 --> ing15_Thiamine_HCl_x_2_H2O
CHEBI_132751["CHEBI:132751"]
ing15_Thiamine_HCl_x_2_H2O -.-> CHEBI_132751
ing16_Nicotinic_acid["Nicotinic acid"]
CultureMech_006697 --> ing16_Nicotinic_acid
CHEBI_15940["CHEBI:15940"]
ing16_Nicotinic_acid -.-> CHEBI_15940
ing17_Pyridoxine_hydrochloride["Pyridoxine hydrochloride"]
CultureMech_006697 --> ing17_Pyridoxine_hydrochloride
CHEBI_30961["CHEBI:30961"]
ing17_Pyridoxine_hydrochloride -.-> CHEBI_30961
ing18_Calcium_pantothenate["Calcium pantothenate"]
CultureMech_006697 --> ing18_Calcium_pantothenate
CHEBI_31345["CHEBI:31345"]
ing18_Calcium_pantothenate -.-> CHEBI_31345
ing19_Biotin["Biotin"]
CultureMech_006697 --> ing19_Biotin
CHEBI_15956["CHEBI:15956"]
ing19_Biotin -.-> CHEBI_15956
ing20_Folic_acid["Folic acid"]
CultureMech_006697 --> ing20_Folic_acid
CHEBI_27470["CHEBI:27470"]
ing20_Folic_acid -.-> CHEBI_27470
Ingredients (21)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 | Yeast extract | 3.043478 G_PER_L | [Merged 2 duplicates: 2.5, 0.543478] | |
| 2 |
Na-acetate
C2H3O2.Na 82.034 g/mol
|
3 G_PER_L |
CHEBI:32954
sodium acetate
|
|
| 3 | Vitamin B12 | 0.112 G_PER_L |
CHEBI:176843
vitamin B12
|
[Merged 3 duplicates: 0.002, 0.1, 0.01] |
| 4 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.543478 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 5 |
Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
|
44.8148 G_PER_L |
CHEBI:76209
sodium sulfide nonahydrate
|
[Merged 2 duplicates: 14.8148, 30.0] |
| 6 |
NaHCO3
CHO3.Na 84.006 g/mol
|
30 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 7 |
Resazurin
C12H7NO4 229.191 g/mol
|
0.0111111 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 8 |
Ammonium chloride
Cl.H4N 53.492 g/mol
|
13.4615 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 9 |
Ammonium acetate
C2H3O2.H4N 77.083 g/mol
|
9.61539 G_PER_L |
CHEBI:62947
ammonium acetate
|
|
| 10 |
Pyruvic acid sodium salt
C3H3O3.Na 110.044 g/mol
|
9.61539 G_PER_L |
CHEBI:50144
sodium pyruvate
|
|
| 11 |
Dextrose
C6H12O6 180.156 g/mol
|
9.61539 G_PER_L |
CHEBI:17634
D-glucose
|
|
| 12 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
19.2308 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 13 |
KCl
Cl.K 74.551 g/mol
|
13.4615 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 14 |
KH2PO4
H2O4P.K 136.084 g/mol
|
13.4615 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 15 |
Riboflavin
C17H20N4O6 376.369 g/mol
|
0.1 G_PER_L |
CHEBI:17015
riboflavin
|
|
| 16 |
Thiamine-HCl x 2 H2O
C12H18N4OS.2Cl.2H2O 373.306 g/mol
|
0.5 G_PER_L |
CHEBI:132751
thiamine hydrochloride dihydrate
|
|
| 17 |
Nicotinic acid
C6H5NO2 123.111 g/mol
|
0.5 G_PER_L |
CHEBI:15940
nicotinic acid
|
|
| 18 |
Pyridoxine hydrochloride
C8H11NO3.HCl 205.641 g/mol
|
0.5 G_PER_L |
CHEBI:30961
pyridoxine hydrochloride
|
|
| 19 |
Calcium pantothenate
2C9H16NO5.Ca 476.536 g/mol
|
0.5 G_PER_L |
CHEBI:31345
Calcium pantothenate
|
|
| 20 |
Biotin
C10H16N2O3S 244.316 g/mol
|
0.001 G_PER_L |
CHEBI:15956
biotin
|
|
| 21 |
Folic acid
C19H19N7O6 441.404 g/mol
|
0.002 G_PER_L |
CHEBI:27470
folic acid
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_867_RHODOBACTER_VELDKAMPII_MEDIUM (CultureMech:006697)
- rhodobacter_veldkampii_medium (CultureMech:002025)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 867 |
| 2026-02-03T11:18:57.582987 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 867 |
| 2026-03-13T03:08:45.704442Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 4 duplicate ingredient(s) |
| 2026-03-13T06:19:43.123917Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:006697 |
| 2026-03-17T06:29:48.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:00.842428+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "RHODOBACTER VELDKAMPII MEDIUM" to "rhodobacter_veldkampii_medium" for consistent matching |
| 2026-06-05T07:40:27.133168+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 19 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:46.123613+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:00.878221+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_867_RHODOBACTER_VELDKAMPII_MEDIUM, rhodobacter_veldkampii_medium |
| 2026-08-06T03:05:00.878282+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint b745c4c4fa13c526d05bde7b3e530eff3db9b941d32b612c0b726a9cedb2c238 |