rhodobacter_veldkampii_medium

CultureMech:002025 bacterial COMPLEX LIQUID
Original name: RHODOBACTER VELDKAMPII MEDIUM

Overview

External ontology
mediadive.medium:867 (source link unavailable) — RHODOBACTER VELDKAMPII MEDIUM
Applications
  • Microbial cultivation
Notes
Source: DSMZ | Link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium867.pdf

Composition

flowchart LR
    CultureMech_002025["rhodobacter_veldkampii_medium"]
    ing0_Yeast_extract["Yeast extract"]
    CultureMech_002025 --> ing0_Yeast_extract
    ing1_Na_acetate["Na-acetate"]
    CultureMech_002025 --> ing1_Na_acetate
    CHEBI_32954["CHEBI:32954"]
    ing1_Na_acetate -.-> CHEBI_32954
    ing2_Vitamin_B12["Vitamin B12"]
    CultureMech_002025 --> ing2_Vitamin_B12
    CHEBI_176843["CHEBI:176843"]
    ing2_Vitamin_B12 -.-> CHEBI_176843
    ing3_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_002025 --> ing3_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing3_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing4_Na2S_x_9_H2O["Na2S x 9 H2O"]
    CultureMech_002025 --> ing4_Na2S_x_9_H2O
    CHEBI_76209["CHEBI:76209"]
    ing4_Na2S_x_9_H2O -.-> CHEBI_76209
    ing5_NaHCO3["NaHCO3"]
    CultureMech_002025 --> ing5_NaHCO3
    CHEBI_32139["CHEBI:32139"]
    ing5_NaHCO3 -.-> CHEBI_32139
    ing6_Resazurin["Resazurin"]
    CultureMech_002025 --> ing6_Resazurin
    CHEBI_8806["CHEBI:8806"]
    ing6_Resazurin -.-> CHEBI_8806
    ing7_Ammonium_chloride["Ammonium chloride"]
    CultureMech_002025 --> ing7_Ammonium_chloride
    CHEBI_31206["CHEBI:31206"]
    ing7_Ammonium_chloride -.-> CHEBI_31206
    ing8_Ammonium_acetate["Ammonium acetate"]
    CultureMech_002025 --> ing8_Ammonium_acetate
    CHEBI_62947["CHEBI:62947"]
    ing8_Ammonium_acetate -.-> CHEBI_62947
    ing9_Pyruvic_acid_sodium_salt["Pyruvic acid sodium salt"]
    CultureMech_002025 --> ing9_Pyruvic_acid_sodium_salt
    CHEBI_50144["CHEBI:50144"]
    ing9_Pyruvic_acid_sodium_salt -.-> CHEBI_50144
    ing10_Dextrose["Dextrose"]
    CultureMech_002025 --> ing10_Dextrose
    CHEBI_17634["CHEBI:17634"]
    ing10_Dextrose -.-> CHEBI_17634
    ing11_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_002025 --> ing11_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing11_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing12_KCl["KCl"]
    CultureMech_002025 --> ing12_KCl
    CHEBI_32588["CHEBI:32588"]
    ing12_KCl -.-> CHEBI_32588
    ing13_KH2PO4["KH2PO4"]
    CultureMech_002025 --> ing13_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing13_KH2PO4 -.-> CHEBI_63036
    ing14_Riboflavin["Riboflavin"]
    CultureMech_002025 --> ing14_Riboflavin
    CHEBI_17015["CHEBI:17015"]
    ing14_Riboflavin -.-> CHEBI_17015
    ing15_Thiamine_HCl_x_2_H2O["Thiamine-HCl x 2 H2O"]
    CultureMech_002025 --> ing15_Thiamine_HCl_x_2_H2O
    CHEBI_132751["CHEBI:132751"]
    ing15_Thiamine_HCl_x_2_H2O -.-> CHEBI_132751
    ing16_Nicotinic_acid["Nicotinic acid"]
    CultureMech_002025 --> ing16_Nicotinic_acid
    CHEBI_15940["CHEBI:15940"]
    ing16_Nicotinic_acid -.-> CHEBI_15940
    ing17_Pyridoxine_hydrochloride["Pyridoxine hydrochloride"]
    CultureMech_002025 --> ing17_Pyridoxine_hydrochloride
    CHEBI_30961["CHEBI:30961"]
    ing17_Pyridoxine_hydrochloride -.-> CHEBI_30961
    ing18_Calcium_pantothenate["Calcium pantothenate"]
    CultureMech_002025 --> ing18_Calcium_pantothenate
    CHEBI_31345["CHEBI:31345"]
    ing18_Calcium_pantothenate -.-> CHEBI_31345
    ing19_Biotin["Biotin"]
    CultureMech_002025 --> ing19_Biotin
    CHEBI_15956["CHEBI:15956"]
    ing19_Biotin -.-> CHEBI_15956
    ing20_Folic_acid["Folic acid"]
    CultureMech_002025 --> ing20_Folic_acid
    CHEBI_27470["CHEBI:27470"]
    ing20_Folic_acid -.-> CHEBI_27470

Ingredients (21)

# Ingredient Concentration Ontology Notes
1 Yeast extract 3.043478 G_PER_L [Merged 2 duplicates: 2.5, 0.543478]
2 Na-acetate
C2H3O2.Na 82.034 g/mol
3 G_PER_L CHEBI:32954
sodium acetate
3 Vitamin B12 0.112 G_PER_L CHEBI:176843
vitamin B12
[Merged 3 duplicates: 0.002, 0.1, 0.01]
4 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
0.543478 G_PER_L CHEBI:86158
calcium chloride dihydrate
5 Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
44.8148 G_PER_L CHEBI:76209
sodium sulfide nonahydrate
[Merged 2 duplicates: 14.8148, 30.0]
6 NaHCO3
CHO3.Na 84.006 g/mol
30 G_PER_L CHEBI:32139
sodium hydrogencarbonate
7 Resazurin
C12H7NO4 229.191 g/mol
0.0111111 G_PER_L CHEBI:8806
Resazurin
8 Ammonium chloride
Cl.H4N 53.492 g/mol
13.4615 G_PER_L CHEBI:31206
ammonium chloride
9 Ammonium acetate
C2H3O2.H4N 77.083 g/mol
9.61539 G_PER_L CHEBI:62947
ammonium acetate
10 Pyruvic acid sodium salt
C3H3O3.Na 110.044 g/mol
9.61539 G_PER_L CHEBI:50144
sodium pyruvate
11 Dextrose
C6H12O6 180.156 g/mol
9.61539 G_PER_L CHEBI:17634
D-glucose
12 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
19.2308 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
13 KCl
Cl.K 74.551 g/mol
13.4615 G_PER_L CHEBI:32588
potassium chloride
14 KH2PO4
H2O4P.K 136.084 g/mol
13.4615 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
15 Riboflavin
C17H20N4O6 376.369 g/mol
0.1 G_PER_L CHEBI:17015
riboflavin
16 Thiamine-HCl x 2 H2O
C12H18N4OS.2Cl.2H2O 373.306 g/mol
0.5 G_PER_L CHEBI:132751
thiamine hydrochloride dihydrate
17 Nicotinic acid
C6H5NO2 123.111 g/mol
0.5 G_PER_L CHEBI:15940
nicotinic acid
18 Pyridoxine hydrochloride
C8H11NO3.HCl 205.641 g/mol
0.5 G_PER_L CHEBI:30961
pyridoxine hydrochloride
19 Calcium pantothenate
2C9H16NO5.Ca 476.536 g/mol
0.5 G_PER_L CHEBI:31345
Calcium pantothenate
20 Biotin
C10H16N2O3S 244.316 g/mol
0.001 G_PER_L CHEBI:15956
biotin
21 Folic acid
C19H19N7O6 441.404 g/mol
0.002 G_PER_L CHEBI:27470
folic acid

Preparation

  1. supplement medium 28 with 0,25% Yeast-extract, 0,3% Na-acetate, 2mg/l Vitamin B12 and 10ml/l Standard vitamin solution (see below).
  2. Adjust the pH with filter-sterilised 1M Na2CO3 to 7.1-7.3.
  3. If needed, aliquot into sterile, N<sub>2</sub> gassed screw-cap tubes under N<sub>2</sub> gas.
  4. During the first 24 h, the iron of the medium precipitates in the form of black flocks. No other sediment should arise in the otherwise clear medium.
  5. Aliquot Solution A into 100 mL screw-cap bottles, filled with 46 mL each. Bubble with N2/CO2 and autoclave at 121°C for 15 min (as decribed below).
  6. Prepare the following solutions (resazurin, bicarbonate and Pfennig's heterotrophic salts) and sterilize as given below.
  7. Add bicarbonate solution and Pfennig's heterotrophic salts to the resazurin (complete volumina, i.e. 50 mL bicarbonate solution and 26 mL Pfennig's heterotrophic salts solution). Bubble with CO2 in an ice bath under sterile conditions.
  8. Fill 50 ml of this mixture to each bottle of solution A (46 mL + 50 mL).
  9. Before use, add 4 ml sulfide solution (1.5%) and 0.1 ml Vitamin B12 solution to each 100 mL bottle.
  10. Feed the actively growing culture periodically with neutralized 3% solution of sodium sulfide (use 1 -3 mL/100 mL depending on strain and cultivation stage) to replenish sulfide and with other supplement solutions (see Ref. 3365).
  11. Aliquot Solution A into 100 mL screw-cap bottles, filled with 46 mL each. Bubble with N2/CO2 and autoclave at 121°C for 15 min.
  12. Prepare in a screw-cap bottle, bubble with N2 to replace air, close tightly and autoclave.
  13. Bubble with CO2 and filter sterilize into sterile, gas-tight, 100 ml screw-cap bottle.
  14. Autoclave in a cotton-stoppered Erlenmeyer flask with an outlet tube for medium, connected to a glass outlet at the bottom of the vessel and has, at the other end, a silicon rubber tube with a pinch cock and a bell for aseptic dispensing of the medium into bottles.
  15. Cool to room temperature under an atmosphere of N2/CO2 in an ice bath.
  16. Filter sterilize into sterile, gas-tight, 100 ml screw-cap bottle.
  17. Filter sterilized
  18. The sulfide solution is prepared in a 250 ml screw-capped bottle with a butyl rubber septum and a magnetic stirrer. The solution is bubbled with nitrogen gas, closed and autoclaved for 15 min. at 121°C. After cooling to room temperature the pH is adjusted to about 7.0 by adding of sterile 2 M H2SO4 drop-wise with a syringe without opening the bottle.

Target organisms

No target organisms are recorded.

Provenance

TimestampCuratorActionNotes
2026-01-26T17:53:12.561434Z mediadive-import Imported from MediaDive Source: DSMZ, ID: 867
2026-03-13T03:09:18.799790Z data-quality-cleanup-v1.0 Data quality fixes Merged 4 duplicate ingredient(s)
2026-03-13T06:19:09.532361Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:002025
2026-03-17T06:30:26.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:45:22.103488+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "RHODOBACTER VELDKAMPII MEDIUM" to "rhodobacter_veldkampii_medium" for consistent matching
2026-06-05T07:41:44.314444+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 19 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:47:10.949791+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 2 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.