ignicoccus_medium

CultureMech:006753 archaea COMPLEX LIQUID
Original name: IGNICOCCUS medium

Overview

External ontology
komodo.medium:897 (source link unavailable) — IGNICOCCUS medium
Applications
  • Microbial cultivation
Synonyms
  • {'name': 'for_dsm_18386', 'source': 'KOMODO', 'source_id': 'komodo.medium:897.1', 'original_category': 'bacterial'}
pH
5.5
Notes
pH buffer: H2SO4 | Source: KOMODO ModelSEED | ID: 897 | DSMZ Medium: 897 (mediadive.medium:897) | Aerobic: Yes

Composition

flowchart LR
    CultureMech_006753["ignicoccus_medium"]
    ing0_NaCl["NaCl"]
    CultureMech_006753 --> ing0_NaCl
    CHEBI_26710["CHEBI:26710"]
    ing0_NaCl -.-> CHEBI_26710
    ing1_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
    CultureMech_006753 --> ing1_MgSO4_x_7_H2O
    CHEBI_31795["CHEBI:31795"]
    ing1_MgSO4_x_7_H2O -.-> CHEBI_31795
    ing2_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
    CultureMech_006753 --> ing2_MgCl2_x_6_H2O
    CHEBI_86345["CHEBI:86345"]
    ing2_MgCl2_x_6_H2O -.-> CHEBI_86345
    ing3_KH2PO4["KH2PO4"]
    CultureMech_006753 --> ing3_KH2PO4
    CHEBI_63036["CHEBI:63036"]
    ing3_KH2PO4 -.-> CHEBI_63036
    ing4__NH4_2SO4["(NH4)2SO4"]
    CultureMech_006753 --> ing4__NH4_2SO4
    CHEBI_62946["CHEBI:62946"]
    ing4__NH4_2SO4 -.-> CHEBI_62946
    ing5_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
    CultureMech_006753 --> ing5_CaCl2_x_2_H2O
    CHEBI_86158["CHEBI:86158"]
    ing5_CaCl2_x_2_H2O -.-> CHEBI_86158
    ing6_KCl["KCl"]
    CultureMech_006753 --> ing6_KCl
    CHEBI_32588["CHEBI:32588"]
    ing6_KCl -.-> CHEBI_32588
    ing7_NaBr["NaBr"]
    CultureMech_006753 --> ing7_NaBr
    CHEBI_63004["CHEBI:63004"]
    ing7_NaBr -.-> CHEBI_63004
    ing8_H3BO3["H3BO3"]
    CultureMech_006753 --> ing8_H3BO3
    CHEBI_33118["CHEBI:33118"]
    ing8_H3BO3 -.-> CHEBI_33118
    ing9_SrCl2_x_6_H2O["SrCl2 x 6 H2O"]
    CultureMech_006753 --> ing9_SrCl2_x_6_H2O
    CHEBI_36385["CHEBI:36385"]
    ing9_SrCl2_x_6_H2O -.-> CHEBI_36385
    ing10_KI["KI"]
    CultureMech_006753 --> ing10_KI
    CHEBI_8346["CHEBI:8346"]
    ing10_KI -.-> CHEBI_8346
    ing11_Sodium_resazurin["Sodium resazurin"]
    CultureMech_006753 --> ing11_Sodium_resazurin
    CHEBI_8806["CHEBI:8806"]
    ing11_Sodium_resazurin -.-> CHEBI_8806
    ing12_Sulfur["Sulfur"]
    CultureMech_006753 --> ing12_Sulfur
    CHEBI_26833["CHEBI:26833"]
    ing12_Sulfur -.-> CHEBI_26833
    ing13_Meat_extract["Meat extract"]
    CultureMech_006753 --> ing13_Meat_extract
    ing14_Na2S_x_9_H2O["Na2S x 9 H2O"]
    CultureMech_006753 --> ing14_Na2S_x_9_H2O
    CHEBI_76209["CHEBI:76209"]
    ing14_Na2S_x_9_H2O -.-> CHEBI_76209
    ing15_H2SO4["H2SO4"]
    CultureMech_006753 --> ing15_H2SO4
    CHEBI_26836["CHEBI:26836"]
    ing15_H2SO4 -.-> CHEBI_26836

Ingredients (16)

# Ingredient Concentration Ontology Notes
1 NaCl
Cl.Na 58.443 g/mol
13.5417 G_PER_L CHEBI:26710
sodium chloride
2 MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
3.47222 G_PER_L CHEBI:31795
magnesium sulfate heptahydrate
3 MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
2.72817 G_PER_L CHEBI:86345
magnesium dichloride hexahydrate
4 KH2PO4
H2O4P.K 136.084 g/mol
0.496032 G_PER_L CHEBI:63036
potassium dihydrogen phosphate
5 (NH4)2SO4
2H4N.O4S 132.141 g/mol
0.248016 G_PER_L CHEBI:62946
ammonium sulfate
6 CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
0.376984 G_PER_L CHEBI:86158
calcium chloride dihydrate
7 KCl
Cl.K 74.551 g/mol
0.327381 G_PER_L CHEBI:32588
potassium chloride
8 NaBr
Br.Na 102.894 g/mol
0.0496032 G_PER_L CHEBI:63004
sodium bromide
9 H3BO3
H3BO3 61.833 g/mol
0.014881 G_PER_L CHEBI:33118
boric acid
10 SrCl2 x 6 H2O
Cl2Sr.6H2O 266.616 g/mol
0.00694444 G_PER_L CHEBI:36385
strontium dichloride hexahydrate
11 KI
I.K 166.002 g/mol
4.96032e-05 G_PER_L CHEBI:8346
potassium iodide
12 Sodium resazurin
C12H7NO4 229.191 g/mol
0.000496032 G_PER_L CHEBI:8806
Resazurin
13 Sulfur
S 32.067 g/mol
4.96032 G_PER_L CHEBI:26833
sulfur atom
14 Meat extract 0.992063 G_PER_L
15 Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
0.198413 G_PER_L CHEBI:76209
sodium sulfide nonahydrate
16 H2SO4
H2O4S 98.079 g/mol
variable VARIABLE CHEBI:26836
sulfuric acid
 pH adjustment (extracted from notes)

Target organisms

No target organisms are recorded.

Provenance

Merged from 2 source records.

TimestampCuratorActionNotes
2026-01-27T01:15:03.fZ komodo-web-import Imported from KOMODO web table Source: KOMODO, ID: 897
2026-02-03T11:19:16.242138 dsmz-resolver-v1.0 Enriched with DSMZ composition Copied ingredients from DSMZ Medium 897
2026-03-13T03:09:34.983204Z data-quality-cleanup-v1.0 Data quality fixes Added pH buffer: H2SO4
2026-03-13T06:19:43.643185Z culturemech-id-assigner-v1.0 Assigned CultureMech ID Assigned stable identifier: CultureMech:006753
2026-03-14T00:00:00+00:00 schema-defaulter-v1.0 Applied schema defaults and normalizations Added default concentration for ingredient: H2SO4
2026-03-17T06:30:46.000000Z mediaingredientmech-enrichment-v1.0 Added MediaIngredientMech links Linked ingredients to MediaIngredientMech identifiers
2026-03-17T19:46:01.443322+00:00 normalize_media_names_to_snake_case.py NAME_NORMALIZED Normalized name from "IGNICOCCUS medium" to "ignicoccus_medium" for consistent matching
2026-05-16T09:03:05.308558+00:00 migrate_legacy_fields.py MIGRATED_LEGACY_FIELDS curation_history.date->timestamp=1
2026-06-05T07:40:27.563802+00:00 mim-legacy-to-chebi-migration-v1.0 Refreshed legacy MediaIngredientMech links to CHEBI keying Replaced 13 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme.
2026-06-10T07:46:46.271794+00:00 primary-term-label-canonicalization-v1.0 Canonicalized primary term label to OBO canonical (OAK) 4 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi.
2026-08-06T03:04:24.211389+00:00 recipe-merger Merged 2 duplicate recipes into canonical record Sources: KOMODO_897_IGNICOCCUS_medium, for_dsm_18386
2026-08-06T03:04:24.211439+00:00 merge_recipes.py MERGED_RECIPES merged 2 source recipe(s) on fingerprint a49447f2892dc4a08e0ffcac4c18caec2b5932b7bca928c82d0ca3811c13c567