Overview
- External ontology
- komodo.medium:897.1 (source link unavailable) — For DSM 18386
- Applications
-
- Microbial cultivation
- pH
- 5.5
- Notes
- pH buffer: H2SO4 | Source: KOMODO ModelSEED | ID: 897.1 | DSMZ Medium: 897 (mediadive.medium:897) | Aerobic: Yes
Composition
flowchart LR
CultureMech_006752["for_dsm_18386"]
ing0_NaCl["NaCl"]
CultureMech_006752 --> ing0_NaCl
CHEBI_26710["CHEBI:26710"]
ing0_NaCl -.-> CHEBI_26710
ing1_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_006752 --> ing1_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing1_MgSO4_x_7_H2O -.-> CHEBI_31795
ing2_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
CultureMech_006752 --> ing2_MgCl2_x_6_H2O
CHEBI_86345["CHEBI:86345"]
ing2_MgCl2_x_6_H2O -.-> CHEBI_86345
ing3_KH2PO4["KH2PO4"]
CultureMech_006752 --> ing3_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing3_KH2PO4 -.-> CHEBI_63036
ing4__NH4_2SO4["(NH4)2SO4"]
CultureMech_006752 --> ing4__NH4_2SO4
CHEBI_62946["CHEBI:62946"]
ing4__NH4_2SO4 -.-> CHEBI_62946
ing5_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_006752 --> ing5_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing5_CaCl2_x_2_H2O -.-> CHEBI_86158
ing6_KCl["KCl"]
CultureMech_006752 --> ing6_KCl
CHEBI_32588["CHEBI:32588"]
ing6_KCl -.-> CHEBI_32588
ing7_NaBr["NaBr"]
CultureMech_006752 --> ing7_NaBr
CHEBI_63004["CHEBI:63004"]
ing7_NaBr -.-> CHEBI_63004
ing8_H3BO3["H3BO3"]
CultureMech_006752 --> ing8_H3BO3
CHEBI_33118["CHEBI:33118"]
ing8_H3BO3 -.-> CHEBI_33118
ing9_SrCl2_x_6_H2O["SrCl2 x 6 H2O"]
CultureMech_006752 --> ing9_SrCl2_x_6_H2O
CHEBI_36385["CHEBI:36385"]
ing9_SrCl2_x_6_H2O -.-> CHEBI_36385
ing10_KI["KI"]
CultureMech_006752 --> ing10_KI
CHEBI_8346["CHEBI:8346"]
ing10_KI -.-> CHEBI_8346
ing11_Sodium_resazurin["Sodium resazurin"]
CultureMech_006752 --> ing11_Sodium_resazurin
CHEBI_8806["CHEBI:8806"]
ing11_Sodium_resazurin -.-> CHEBI_8806
ing12_Sulfur["Sulfur"]
CultureMech_006752 --> ing12_Sulfur
CHEBI_26833["CHEBI:26833"]
ing12_Sulfur -.-> CHEBI_26833
ing13_Meat_extract["Meat extract"]
CultureMech_006752 --> ing13_Meat_extract
ing14_Na2S_x_9_H2O["Na2S x 9 H2O"]
CultureMech_006752 --> ing14_Na2S_x_9_H2O
CHEBI_76209["CHEBI:76209"]
ing14_Na2S_x_9_H2O -.-> CHEBI_76209
ing15_H2SO4["H2SO4"]
CultureMech_006752 --> ing15_H2SO4
CHEBI_26836["CHEBI:26836"]
ing15_H2SO4 -.-> CHEBI_26836
Ingredients (16)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
NaCl
Cl.Na 58.443 g/mol
|
13.5417 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 2 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
3.47222 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 3 |
MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
|
2.72817 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
|
| 4 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.496032 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 5 |
(NH4)2SO4
2H4N.O4S 132.141 g/mol
|
0.248016 G_PER_L |
CHEBI:62946
ammonium sulfate
|
|
| 6 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
0.376984 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 7 |
KCl
Cl.K 74.551 g/mol
|
0.327381 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 8 |
NaBr
Br.Na 102.894 g/mol
|
0.0496032 G_PER_L |
CHEBI:63004
sodium bromide
|
|
| 9 |
H3BO3
H3BO3 61.833 g/mol
|
0.014881 G_PER_L |
CHEBI:33118
boric acid
|
|
| 10 |
SrCl2 x 6 H2O
Cl2Sr.6H2O 266.616 g/mol
|
0.00694444 G_PER_L |
CHEBI:36385
strontium dichloride hexahydrate
|
|
| 11 |
KI
I.K 166.002 g/mol
|
4.96032e-05 G_PER_L |
CHEBI:8346
potassium iodide
|
|
| 12 |
Sodium resazurin
C12H7NO4 229.191 g/mol
|
0.000496032 G_PER_L |
CHEBI:8806
Resazurin
|
|
| 13 |
Sulfur
S 32.067 g/mol
|
4.96032 G_PER_L |
CHEBI:26833
sulfur atom
|
|
| 14 | Meat extract | 0.992063 G_PER_L | ||
| 15 |
Na2S x 9 H2O
9H2O.2Na.S 240.182 g/mol
|
0.198413 G_PER_L |
CHEBI:76209
sodium sulfide nonahydrate
|
|
| 16 |
H2SO4
H2O4S 98.079 g/mol
|
variable VARIABLE |
CHEBI:26836
sulfuric acid
|
pH adjustment (extracted from notes) |
Target organisms
No target organisms are recorded.
Provenance
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 897.1 |
| 2026-02-03T11:19:18.272784 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 897 |
| 2026-03-13T03:09:40.591781Z | data-quality-cleanup-v1.0 | Data quality fixes | Added pH buffer: H2SO4 |
| 2026-03-13T06:19:43.635491Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:006752 |
| 2026-03-14T00:00:00+00:00 | schema-defaulter-v1.0 | Applied schema defaults and normalizations | Added default concentration for ingredient: H2SO4 |
| 2026-03-17T06:30:52.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:01.433900+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "For DSM 18386" to "for_dsm_18386" for consistent matching |
| 2026-05-16T09:03:33.637711+00:00 | migrate_legacy_fields.py | MIGRATED_LEGACY_FIELDS | curation_history.date->timestamp=1 |
| 2026-06-05T07:41:02.981255+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 13 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:57.845097+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 4 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-09-13T00:00:00-07:00 | repair_komodo_897_ignicoccus_score10.py | RESOLVED_KOMODO_897_IGNICOCCUS_TOPOLOGY | KOMODO Medium 897.1 applies IGNICOCCUS medium to DSM 18386. |