Overview
- External ontology
- komodo.medium:929 (source link unavailable) — RHODOVULUM IODOSUM AND R. ROBIGINOSUM MEDIUM
- Applications
-
- Microbial cultivation
- pH
- 6.8
- Notes
- Source: KOMODO ModelSEED | ID: 929 | DSMZ Medium: 929 (mediadive.medium:929) | Aerobic: Yes
Composition
flowchart LR
CultureMech_006847["rhodovulum_iodosum_and_r_robiginosum_medium"]
ing0_NaCl["NaCl"]
CultureMech_006847 --> ing0_NaCl
CHEBI_26710["CHEBI:26710"]
ing0_NaCl -.-> CHEBI_26710
ing1_MgCl2_x_6_H2O["MgCl2 x 6 H2O"]
CultureMech_006847 --> ing1_MgCl2_x_6_H2O
CHEBI_86345["CHEBI:86345"]
ing1_MgCl2_x_6_H2O -.-> CHEBI_86345
ing2_MgSO4_x_7_H2O["MgSO4 x 7 H2O"]
CultureMech_006847 --> ing2_MgSO4_x_7_H2O
CHEBI_31795["CHEBI:31795"]
ing2_MgSO4_x_7_H2O -.-> CHEBI_31795
ing3_CaCl2_x_2_H2O["CaCl2 x 2 H2O"]
CultureMech_006847 --> ing3_CaCl2_x_2_H2O
CHEBI_86158["CHEBI:86158"]
ing3_CaCl2_x_2_H2O -.-> CHEBI_86158
ing4_KCl["KCl"]
CultureMech_006847 --> ing4_KCl
CHEBI_32588["CHEBI:32588"]
ing4_KCl -.-> CHEBI_32588
ing5_KBr["KBr"]
CultureMech_006847 --> ing5_KBr
CHEBI_32030["CHEBI:32030"]
ing5_KBr -.-> CHEBI_32030
ing6_KH2PO4["KH2PO4"]
CultureMech_006847 --> ing6_KH2PO4
CHEBI_63036["CHEBI:63036"]
ing6_KH2PO4 -.-> CHEBI_63036
ing7_NH4Cl["NH4Cl"]
CultureMech_006847 --> ing7_NH4Cl
CHEBI_31206["CHEBI:31206"]
ing7_NH4Cl -.-> CHEBI_31206
ing8_Na2S2O3_x_5_H2O["Na2S2O3 x 5 H2O"]
CultureMech_006847 --> ing8_Na2S2O3_x_5_H2O
CHEBI_32150["CHEBI:32150"]
ing8_Na2S2O3_x_5_H2O -.-> CHEBI_32150
ing9_NaHCO3["NaHCO3"]
CultureMech_006847 --> ing9_NaHCO3
CHEBI_32139["CHEBI:32139"]
ing9_NaHCO3 -.-> CHEBI_32139
ing10_Sodium_acetate["Sodium acetate"]
CultureMech_006847 --> ing10_Sodium_acetate
CHEBI_32954["CHEBI:32954"]
ing10_Sodium_acetate -.-> CHEBI_32954
ing11_FeSO4_x_7_H2O["FeSO4 x 7 H2O"]
CultureMech_006847 --> ing11_FeSO4_x_7_H2O
CHEBI_75836["CHEBI:75836"]
ing11_FeSO4_x_7_H2O -.-> CHEBI_75836
ing12_Na2_EDTA["Na2-EDTA"]
CultureMech_006847 --> ing12_Na2_EDTA
CHEBI_64734["CHEBI:64734"]
ing12_Na2_EDTA -.-> CHEBI_64734
ing13_H3BO3["H3BO3"]
CultureMech_006847 --> ing13_H3BO3
CHEBI_33118["CHEBI:33118"]
ing13_H3BO3 -.-> CHEBI_33118
ing14_MnCl2_x_4_H2O["MnCl2 x 4 H2O"]
CultureMech_006847 --> ing14_MnCl2_x_4_H2O
CHEBI_86368["CHEBI:86368"]
ing14_MnCl2_x_4_H2O -.-> CHEBI_86368
ing15_CoCl2_x_6_H2O["CoCl2 x 6 H2O"]
CultureMech_006847 --> ing15_CoCl2_x_6_H2O
CHEBI_53503["CHEBI:53503"]
ing15_CoCl2_x_6_H2O -.-> CHEBI_53503
ing16_NiCl2_x_6_H2O["NiCl2 x 6 H2O"]
CultureMech_006847 --> ing16_NiCl2_x_6_H2O
CHEBI_34887["CHEBI:34887"]
ing16_NiCl2_x_6_H2O -.-> CHEBI_34887
ing17_CuCl2_x_2_H2O["CuCl2 x 2 H2O"]
CultureMech_006847 --> ing17_CuCl2_x_2_H2O
CHEBI_86318["CHEBI:86318"]
ing17_CuCl2_x_2_H2O -.-> CHEBI_86318
ing18_ZnSO4_x_7_H2O["ZnSO4 x 7 H2O"]
CultureMech_006847 --> ing18_ZnSO4_x_7_H2O
CHEBI_32312["CHEBI:32312"]
ing18_ZnSO4_x_7_H2O -.-> CHEBI_32312
ing19_Na2MoO4_x_2_H2O["Na2MoO4 x 2 H2O"]
CultureMech_006847 --> ing19_Na2MoO4_x_2_H2O
CHEBI_75213["CHEBI:75213"]
ing19_Na2MoO4_x_2_H2O -.-> CHEBI_75213
ing20_Na2SeO3_x_5_H2O["Na2SeO3 x 5 H2O"]
CultureMech_006847 --> ing20_Na2SeO3_x_5_H2O
CHEBI_131361["CHEBI:131361"]
ing20_Na2SeO3_x_5_H2O -.-> CHEBI_131361
ing21_Na2WO4_x_2_H2O["Na2WO4 x 2 H2O"]
CultureMech_006847 --> ing21_Na2WO4_x_2_H2O
CHEBI_63939["CHEBI:63939"]
ing21_Na2WO4_x_2_H2O -.-> CHEBI_63939
ing22_NaOH["NaOH"]
CultureMech_006847 --> ing22_NaOH
CHEBI_32145["CHEBI:32145"]
ing22_NaOH -.-> CHEBI_32145
ing23_Para_aminobenzoic_acid["Para-aminobenzoic acid"]
CultureMech_006847 --> ing23_Para_aminobenzoic_acid
CHEBI_30753["CHEBI:30753"]
ing23_Para_aminobenzoic_acid -.-> CHEBI_30753
ing24_Biotin["Biotin"]
CultureMech_006847 --> ing24_Biotin
CHEBI_15956["CHEBI:15956"]
ing24_Biotin -.-> CHEBI_15956
ing25_Nicotinate["Nicotinate"]
CultureMech_006847 --> ing25_Nicotinate
CHEBI_15940["CHEBI:15940"]
ing25_Nicotinate -.-> CHEBI_15940
ing26_Pantothenate["Pantothenate"]
CultureMech_006847 --> ing26_Pantothenate
CHEBI_16454["CHEBI:16454"]
ing26_Pantothenate -.-> CHEBI_16454
ing27_Pyridoxin["Pyridoxin"]
CultureMech_006847 --> ing27_Pyridoxin
ing28_Thiamin["Thiamin"]
CultureMech_006847 --> ing28_Thiamin
CHEBI_18385["CHEBI:18385"]
ing28_Thiamin -.-> CHEBI_18385
ing29_Cyanocobalamine["Cyanocobalamine"]
CultureMech_006847 --> ing29_Cyanocobalamine
CHEBI_17439["CHEBI:17439"]
ing29_Cyanocobalamine -.-> CHEBI_17439
Ingredients (30)
| # | Ingredient | Concentration | Ontology | Notes |
|---|---|---|---|---|
| 1 |
NaCl
Cl.Na 58.443 g/mol
|
26.4 G_PER_L |
CHEBI:26710
sodium chloride
|
|
| 2 |
MgCl2 x 6 H2O
2Cl.6H2O.Mg 203.301 g/mol
|
5.7 G_PER_L |
CHEBI:86345
magnesium dichloride hexahydrate
|
|
| 3 |
MgSO4 x 7 H2O
7H2O.Mg.O4S 246.473 g/mol
|
6.8 G_PER_L |
CHEBI:31795
magnesium sulfate heptahydrate
|
|
| 4 |
CaCl2 x 2 H2O
Ca.2Cl.2H2O 147.014 g/mol
|
1.5 G_PER_L |
CHEBI:86158
calcium chloride dihydrate
|
|
| 5 |
KCl
Cl.K 74.551 g/mol
|
0.66 G_PER_L |
CHEBI:32588
potassium chloride
|
|
| 6 |
KBr
Br.K 119.002 g/mol
|
0.09 G_PER_L |
CHEBI:32030
potassium bromide
|
|
| 7 |
KH2PO4
H2O4P.K 136.084 g/mol
|
0.4 G_PER_L |
CHEBI:63036
potassium dihydrogen phosphate
|
|
| 8 |
NH4Cl
Cl.H4N 53.492 g/mol
|
0.25 G_PER_L |
CHEBI:31206
ammonium chloride
|
|
| 9 |
Na2S2O3 x 5 H2O
5H2O.2Na.O3S2 248.186 g/mol
|
0.124 G_PER_L |
CHEBI:32150
sodium thiosulfate pentahydrate
|
|
| 10 |
NaHCO3
CHO3.Na 84.006 g/mol
|
2.52 G_PER_L |
CHEBI:32139
sodium hydrogencarbonate
|
|
| 11 |
Sodium acetate
C2H3O2.Na 82.034 g/mol
|
0.41015 G_PER_L |
CHEBI:32954
sodium acetate
|
|
| 12 |
FeSO4 x 7 H2O
Fe.7H2O.O4S 278.013 g/mol
|
4.88015 G_PER_L |
CHEBI:75836
iron(2+) sulfate heptahydrate
|
[Merged 2 duplicates: 2.78015, 2.1] |
| 13 |
Na2-EDTA
C10H14N2O8.2Na 336.208 g/mol
|
5.2 G_PER_L |
CHEBI:64734
EDTA disodium salt (anhydrous)
|
|
| 14 |
H3BO3
H3BO3 61.833 g/mol
|
0.03 G_PER_L |
CHEBI:33118
boric acid
|
|
| 15 |
MnCl2 x 4 H2O
Cl2Mn.4H2O 197.904 g/mol
|
0.1 G_PER_L |
CHEBI:86368
manganese(II) chloride tetrahydrate
|
|
| 16 |
CoCl2 x 6 H2O
2Cl.Co.6H2O 237.929 g/mol
|
0.19 G_PER_L |
CHEBI:53503
cobalt chloride hexahydrate
|
|
| 17 |
NiCl2 x 6 H2O
Cl2Ni 129.599 g/mol
|
0.024 G_PER_L |
CHEBI:34887
nickel dichloride
|
|
| 18 |
CuCl2 x 2 H2O
Cl2Cu.2H2O 170.482 g/mol
|
0.002 G_PER_L |
CHEBI:86318
copper(II) chloride dihydrate
|
|
| 19 |
ZnSO4 x 7 H2O
7H2O.O4S.Zn 287.558 g/mol
|
0.144 G_PER_L |
CHEBI:32312
zinc sulfate heptahydrate
|
|
| 20 |
Na2MoO4 x 2 H2O
2H2O.MoO4.2Na 241.946 g/mol
|
0.036 G_PER_L |
CHEBI:75213
sodium molybdate dihydrate
|
|
| 21 |
Na2SeO3 x 5 H2O
5H2O.2Na.O3Se 263.012 g/mol
|
0.006 G_PER_L |
CHEBI:131361
disodium selenite pentahydrate
|
|
| 22 |
Na2WO4 x 2 H2O
2H2O.2Na.O4W 329.846 g/mol
|
0.008 G_PER_L |
CHEBI:63939
sodium tungstate dihydrate
|
|
| 23 |
NaOH
HO.Na 39.997 g/mol
|
0.2 G_PER_L |
CHEBI:32145
sodium hydroxide
|
|
| 24 |
Para-aminobenzoic acid
C7H7NO2 137.138 g/mol
|
0.04 G_PER_L |
CHEBI:30753
4-aminobenzoic acid
|
|
| 25 |
Biotin
C10H16N2O3S 244.316 g/mol
|
0.01 G_PER_L |
CHEBI:15956
biotin
|
|
| 26 |
Nicotinate
C6H5NO2 123.111 g/mol
|
0.1 G_PER_L |
CHEBI:15940
nicotinic acid
|
|
| 27 |
Pantothenate
C9H16NO5 218.229 g/mol
|
0.05 G_PER_L |
CHEBI:16454
pantothenate
|
|
| 28 | Pyridoxin | 0.15 G_PER_L | ||
| 29 |
Thiamin
C12H17N4OS 265.362 g/mol
|
0.1 G_PER_L |
CHEBI:18385
thiamine(1+)
|
|
| 30 |
Cyanocobalamine
C63H88CoN14O14P 1355.388 g/mol
|
0.05 G_PER_L |
CHEBI:17439
cyanocob(III)alamin
|
Target organisms
No target organisms are recorded.
Provenance
Merged from 2 source records.
- KOMODO_929_RHODOVULUM_IODOSUM_AND_R._ROBIGINOSUM_MEDIUM (CultureMech:006847)
- rhodovulum_iodosum_and_r_robiginosum_medium (CultureMech:002101)
| Timestamp | Curator | Action | Notes |
|---|---|---|---|
| 2026-01-27T01:15:03.fZ | komodo-web-import | Imported from KOMODO web table | Source: KOMODO, ID: 929 |
| 2026-02-03T11:19:09.670483 | dsmz-resolver-v1.0 | Enriched with DSMZ composition | Copied ingredients from DSMZ Medium 929 |
| 2026-02-06T05:10:37.730138Z | invalid-chebi-removal | Removed 1 invalid CHEBI ID(s) | Removed CHEBI IDs with invalid format (7+ digits) from MicrobeMediaParam source data |
| 2026-03-13T03:09:17.652613Z | data-quality-cleanup-v1.0 | Data quality fixes | Merged 1 duplicate ingredient(s) |
| 2026-03-13T06:19:44.302489Z | culturemech-id-assigner-v1.0 | Assigned CultureMech ID | Assigned stable identifier: CultureMech:006847 |
| 2026-03-17T06:30:25.000000Z | mediaingredientmech-enrichment-v1.0 | Added MediaIngredientMech links | Linked ingredients to MediaIngredientMech identifiers |
| 2026-03-17T19:46:02.204598+00:00 | normalize_media_names_to_snake_case.py | NAME_NORMALIZED | Normalized name from "RHODOVULUM IODOSUM AND R. ROBIGINOSUM MEDIUM" to "rhodovulum_iodosum_and_r_robiginosum_medium" for consistent matching |
| 2026-06-05T07:40:27.868630+00:00 | mim-legacy-to-chebi-migration-v1.0 | Refreshed legacy MediaIngredientMech links to CHEBI keying | Replaced 28 legacy mediaingredientmech_term link(s) with mediaingredientmech_chebi_term (id-safe: ingredient's own CHEBI + label). MIM deprecated the MediaIngredientMech:NNNNNN id scheme. |
| 2026-06-10T07:46:46.418299+00:00 | primary-term-label-canonicalization-v1.0 | Canonicalized primary term label to OBO canonical (OAK) | 4 primary term(s); ingredient name resolved by OAK sqlite:obo:chebi. |
| 2026-08-06T03:05:01.997761+00:00 | recipe-merger | Merged 2 duplicate recipes into canonical record | Sources: KOMODO_929_RHODOVULUM_IODOSUM_AND_R._ROBIGINOSUM_MEDIUM, rhodovulum_iodosum_and_r_robiginosum_medium |
| 2026-08-06T03:05:01.997808+00:00 | merge_recipes.py | MERGED_RECIPES | merged 2 source recipe(s) on fingerprint c7d39531ae954b171dc06fb00f99ac64987982d265152f871940975097a4f479 |